Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013150.1

Orthogroup ID

OG0007644

Physical Location & Seq

Genomic Coordinates Reverse (-)

7041 .. 11736

Gene Structure 4696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013150.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgaccggagaagcaggcaagacggtggtcgtcggtgtcaagctcgactcgcacagcaaggagttgctgacgtgggccctcgtcaaagtggccgagcctggtgaccatgtcattgccattcatgtcctcgactccgtctctgaggagacttcgtgtttgctctcgatggtcaagacattcgattctgtgctctctgcttatgaaggtttctgtagcttgaagcagattgatctgaagctaaaggtgtgtagaggcaatccgatcagaaaagttttagtaagggaagcaaaggcatttcatgctgatactctaattgttgggacttccaaaacccaccatagaattcgatcatccgtttccgttgccaagtactgtgcctggaaattgcccaaaagtttctctgttttcgctgtcgataacggcaaggttgtgttcaagagggaagaggctgatagctgtgcacatcaatcacaagataataatcataagtcatctccgaagaacgtagaggttcttgaagatgttaaactaaataaatgcaagaagaaaagccgtaagacaaaatgccagaactgtgaaggggattcagttttattggataattctgggacccaattgacagctgagttgcctggcgatggaaatgaggacaattcattggctttggttccattccaaaggatgaactctatcaagactcaaaatccgcactgttttaaacccggcagtaatgttgtgcactcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

248

Amino Acids

27.22

Weight (kDa)

8.89

Isoelectric Point (pI)

25.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63940
fragaria_vesca	FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700
malus_domestica	MD15G1134800.v1.1
prunus_persica	Prupe.4G275600_v2.0.a1
pyrus_communis	pycom15g12160
rosa_chinensis	RchiOBHm_Chr2g0122201
rosa_laevigata	RLG00000018670
rosa_multiflora	Rmu_co8318615.1_g000001 Rmu_sc0003133.1_g000014 Rmu_sc0013150.1_g000002 Rmu_sc0025362.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121770
rosa_rugosa	Rorug02G0237200 Rorug05G0310500
rosa_samantha	Rh2AG295700 Rh2BG304700 Rh2CG283100 Rh2DG319700
rosa_wichuraiana	Rw2G023550 Rw2G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgsI	TTSAA	3 cut(s)	220, 436, 518
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	3 cut(s)	97, 377, 631
AluBI	AGCT	5 cut(s)	43, 216, 238, 456, 623
AluI	AGCT	5 cut(s)	43, 216, 238, 456, 623
Alw21I	GWGCWC	3 cut(s)	192, 463, 741
Alw26I	GTCTC	2 cut(s)	140, 142
Alw44I	GTGCAC	2 cut(s)	459, 737
AoxI	GGCC	2 cut(s)	75, 90
ApaI	GGGCCC	1 cut(s)	79
ApaLI	GTGCAC	2 cut(s)	459, 737
ApoI	RAATTY	1 cut(s)	342
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspS9I	GGNCC	3 cut(s)	75, 76, 609
AsuC2I	CCSGG	1 cut(s)	723
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	609
BaeGI	GKGCMC	3 cut(s)	79, 463, 741
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	3 cut(s)	192, 463, 741
BccI	CCATC	2 cut(s)	160, 632
BceAI	ACGGC	2 cut(s)	436, 537
BciT130I	CCWGG	3 cut(s)	99, 379, 633
BcnI	CCSGG	1 cut(s)	723
BcoDI	GTCTC	2 cut(s)	140, 142
BfmI	CTRYAG	1 cut(s)	211
BmcAI	AGTACT	1 cut(s)	371
Bme1390I	CCNGG	4 cut(s)	99, 379, 633, 723
Bme18I	GGWCC	1 cut(s)	609
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	3 cut(s)	75, 76, 609
BmiI	GGNNCC	4 cut(s)	77, 610, 611, 669
BmrFI	CCNGG	4 cut(s)	99, 379, 633, 723
BoxI	GACNNNNGTC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	723
BsaBI	GATNNNNATC	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	3 cut(s)	99, 379, 633
BseGI	GGATG	2 cut(s)	350, 687
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	132, 615
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	3 cut(s)	79, 463, 741
BshFI	GGCC	2 cut(s)	77, 92
BsiHKAI	GWGCWC	3 cut(s)	192, 463, 741
BsiSI	CCGG	2 cut(s)	6, 723
BslFI	GGGAC	2 cut(s)	334, 622
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	2 cut(s)	140, 142
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	334, 622
BsnI	GGCC	2 cut(s)	77, 92
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	4 cut(s)	79, 192, 463, 741
Bsp143I	GATC	3 cut(s)	229, 261, 347
BspACI	CCGC	1 cut(s)	707
BspANI	GGCC	2 cut(s)	77, 92
BspCNI	CTCAG	2 cut(s)	133, 616
BspLI	GGNNCC	4 cut(s)	77, 610, 611, 669
BsrDI	GCAATG	1 cut(s)	111
BssMI	GATC	3 cut(s)	229, 261, 347
Bst2UI	CCWGG	3 cut(s)	99, 379, 633
Bst4CI	ACNGT	4 cut(s)	25, 374, 575, 713
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	141, 624
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	350, 687
BstKTI	GATC	3 cut(s)	232, 264, 350
BstMAI	GTCTC	2 cut(s)	140, 142
BstMBI	GATC	3 cut(s)	229, 261, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 299
BstNI	CCWGG	3 cut(s)	99, 379, 633
BstPAI	GACNNNNGTC	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	4 cut(s)	97, 377, 631, 721
BstSFI	CTRYAG	1 cut(s)	211
BstSLI	GKGCMC	3 cut(s)	79, 463, 741
BsuRI	GGCC	2 cut(s)	77, 92
BtgZI	GCGATG	1 cut(s)	651
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	350, 687
BtsIMutI	CAGTG	1 cut(s)	709
Cac8I	GCNNGC	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	75, 76, 609
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	3 cut(s)	107, 122, 299
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	141, 624
DpnI	GATC	3 cut(s)	231, 263, 349
DpnII	GATC	3 cut(s)	229, 261, 347
DraI	TTTAAA	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	101
EcoO109I	RGGNCCY	2 cut(s)	76, 609
EcoO65I	GGTNACC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	97, 377, 631
EcoT38I	GRGCYC	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	3 cut(s)	110, 125, 302
FaiI	YATR	6 cut(s)	108, 123, 201, 300, 339, 486
FaqI	GGGAC	2 cut(s)	334, 622
FatI	CATG	3 cut(s)	106, 121, 298
FokI	GGATG	2 cut(s)	337, 694
FriOI	GRGCYC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	77, 92
HapII	CCGG	2 cut(s)	6, 723
Hin1II	CATG	3 cut(s)	110, 125, 302
HinfI	GANTC	5 cut(s)	47, 131, 182, 584, 697
HpaII	CCGG	2 cut(s)	6, 723
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	461, 739
Hpy188I	TCNGA	5 cut(s)	142, 234, 261, 266, 498
Hpy188III	TCNNGA	5 cut(s)	163, 172, 436, 515, 694
Hpy8I	GTNNAC	2 cut(s)	461, 739
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	197, 572
HpyCH4III	ACNGT	4 cut(s)	25, 374, 575, 713
HpyCH4IV	ACGT	2 cut(s)	71, 504
HpyCH4V	TGCA	3 cut(s)	461, 540, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 299
HpyF3I	CTNAG	2 cut(s)	141, 624
HpySE526I	ACGT	2 cut(s)	71, 504
Hsp92II	CATG	3 cut(s)	110, 125, 302
KflI	GGGWCCC	1 cut(s)	609
Kzo9I	GATC	3 cut(s)	229, 261, 347
MaeII	ACGT	2 cut(s)	71, 504
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	231, 263, 349
MboI	GATC	3 cut(s)	229, 261, 347
MboII	GAAGA	4 cut(s)	455, 511, 530, 556
MfeI	CAATTG	1 cut(s)	614
MhlI	GDGCHC	4 cut(s)	79, 192, 463, 741
MluCI	AATT	6 cut(s)	312, 342, 383, 601, 614, 652
MlyI	GAGTC	3 cut(s)	41, 125, 691
MnlI	CCTC	8 cut(s)	89, 136, 137, 245, 432, 439, 502, 640
MseI	TTAA	3 cut(s)	525, 717, 745
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	2 cut(s)	6, 723
MspR9I	CCNGG	4 cut(s)	99, 379, 633, 723
MunI	CAATTG	1 cut(s)	614
MvaI	CCWGG	3 cut(s)	99, 379, 633
MwoI	GCNNNNNNNGC	2 cut(s)	49, 299
NciI	CCSGG	1 cut(s)	723
NdeII	GATC	3 cut(s)	229, 261, 347
NlaIII	CATG	3 cut(s)	110, 125, 302
NlaIV	GGNNCC	4 cut(s)	77, 610, 611, 669
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	182, 584
PflFI	GACNNNGTC	2 cut(s)	107, 134
PleI	GAGTC	3 cut(s)	41, 125, 691
PpsI	GAGTC	3 cut(s)	41, 125, 691
PpuMI	RGGWCCY	1 cut(s)	609
PshAI	GACNNNNGTC	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	609
Psp6I	CCWGG	3 cut(s)	97, 377, 631
PspEI	GGTNACC	1 cut(s)	101
PspGI	CCWGG	3 cut(s)	97, 377, 631
PspN4I	GGNNCC	4 cut(s)	77, 610, 611, 669
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	75, 76, 609
PspPPI	RGGWCCY	1 cut(s)	609
PsyI	GACNNNGTC	2 cut(s)	107, 134
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	525, 717, 745
Sau3AI	GATC	3 cut(s)	229, 261, 347
Sau96I	GGNCC	3 cut(s)	75, 76, 609
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	3 cut(s)	41, 125, 691
ScrFI	CCNGG	4 cut(s)	99, 379, 633, 723
SduI	GDGCHC	4 cut(s)	79, 192, 463, 741
SfcI	CTRYAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	609
Sse9I	AATT	6 cut(s)	312, 342, 383, 601, 614, 652
SsiI	CCGC	1 cut(s)	707
StyD4I	CCNGG	4 cut(s)	97, 377, 631, 721
TaaI	ACNGT	4 cut(s)	25, 374, 575, 713
TaiI	ACGT	2 cut(s)	74, 507
TaqI	TCGA	6 cut(s)	45, 129, 164, 180, 346, 414
TasI	AATT	6 cut(s)	312, 342, 383, 601, 614, 652
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	182, 584
Tru1I	TTAA	3 cut(s)	525, 717, 745
Tru9I	TTAA	3 cut(s)	525, 717, 745
TscAI	CASTG	1 cut(s)	716
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	110, 216, 287, 645, 698
TspGWI	ACGGA	3 cut(s)	124, 343, 349
TspRI	CASTG	1 cut(s)	716
Tth111I	GACNNNGTC	2 cut(s)	107, 134
VneI	GTGCAC	2 cut(s)	459, 737
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.