Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007644

Physical Location & Seq

Genomic Coordinates Reverse (-)

31610592 .. 31612343

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG283100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGACCGGAGAAGCAGGCAAGACGGTGGTCGTTGGTGTCAAGCTCGACTCGCACAGCAAGGAGTTGCTGACGTGGGCCCTCGTCAAAGTGGCCGGGCCTGGTGACCATGTCATTGCCATTCATGTCCTCGACTCCATCTCTGAGGAGACTTCGTGTTTGCTCTCGCTGGTCAAGACATTTGATTCTGTGCTCTCTGCTTATGAAGGTTTCTGTAGCTTGAAGCAGATTGATCTGAAGCTAAAGGTGTGTAGAGGCAATCCGATCAGAAAAGTTTTAGTAAGGGAAGCAAAGGCATTTCATGCTGATACTCTAATTGTTGGGACTTCCAAAACCCACCATAGAATTCGATCATCCGTTTCTGTTGCCAAGTACTGTGCCTGGAAATTGCCCAAAAGTTTCTCTGTTTTCGCTGTCGATAATGGCAAGGTTGTGTTCAAGAGGGAAGACGCTGATAGCTGTGCACATCAATCACAAGATATTAATCATAAGTCATCTCCGAAGAACGTAGAGGTTCTTGAAGATGTTAAACTAAATAAATGCAAGAAGAAAAGCCCTAAGACAAAATGCCAGAACTGTGAAGGGGATTCAGTTTTATTGGATAATTCTGGGACCCAATTGACAGCTGAGTTGCCTGGCGATGGAAATGAGGACAATTCATTGGCTTTGGTTCCATTCCAAAGGATGAACTCTATCAAGACTCAAAATCCGCACTGTTTTAAACCCGGTTGGTCCATTCTTCGCTGGACATTTTTAAGAAGACAGCAACACAAGAAGAAATCTGATGAAAAGACATCTGTTTTGGGACGGGTGTCGAAACCATTGAGTTCCCATACTTCGGCTGTTGTTTATCCTGATCAGAAACACAGTAATTCTAGCCAGGATGGAGATCATTCTTCCGTGCCTGATGGAGCAAGTAGTACAACTGTGTCACTTGGCTCTAATGAAATCTTCCCTCCTCTAACGCCTAACCATGGCATGGAGAGCCTTCCTGAAGAATTTTTAGATTTATGTGAGAAATATTCATCCAGCTGTAGACTGTTTAGCTACGAGGAACTTTTGTTGGCAACATCAAACTTCTTACCTGAGAACATGGTTGGAAAAGGTGGCAGTAGTCATGTTTATAGAGGCCATCTTTTAGACGGGAAGGATTTGGCAGTGAAAATCCTGAAGCCATCTGCAGATATATTGAGAGAGTTTGTTCATGAAGTTGAGATCATCACAGCTTTAAATCACAAGAACATAATCTCTCTATATGGATTATGTTTCGACAACAATTTAGTTTTGGTGTATGATTTTATCTCAAGAGGAAGCTTAGAAGACAACCTTCATGGTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

446

Amino Acids

49.19

Weight (kDa)

8.16

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	7 - 132	1e-09	Universal stress protein family
PK_Tyr_Ser-Thr	PF07714	363 - 443	1.8e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	363 - 443	1.6e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63940
fragaria_vesca	FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700
malus_domestica	MD15G1134800.v1.1
prunus_persica	Prupe.4G275600_v2.0.a1
pyrus_communis	pycom15g12160
rosa_chinensis	RchiOBHm_Chr2g0122201
rosa_laevigata	RLG00000018670
rosa_multiflora	Rmu_co8318615.1_g000001 Rmu_sc0003133.1_g000014 Rmu_sc0013150.1_g000002 Rmu_sc0025362.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121770
rosa_rugosa	Rorug02G0237200 Rorug05G0310500
rosa_samantha	Rh2AG295700 Rh2BG304700 Rh2CG283100 Rh2DG319700
rosa_wichuraiana	Rw2G023550 Rw2G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	976
AccI	GTMKAC	1 cut(s)	1033
AciI	CCGC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	342, 995
AcuI	CTGAAG	3 cut(s)	254, 1011, 1187
AfaI	GTAC	2 cut(s)	371, 919
AfiI	CCNNNNNNNGG	4 cut(s)	638, 835, 971, 976
AgsI	TTSAA	3 cut(s)	220, 436, 518
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	4 cut(s)	97, 377, 631, 876
AluBI	AGCT	9 cut(s)	43, 216, 238, 456, 623, 1029, 1044, 1223, 1311
AluI	AGCT	9 cut(s)	43, 216, 238, 456, 623, 1029, 1044, 1223, 1311
Alw21I	GWGCWC	2 cut(s)	192, 463
Alw26I	GTCTC	1 cut(s)	140
Alw44I	GTGCAC	1 cut(s)	459
AoxI	GGCC	4 cut(s)	75, 90, 95, 1126
ApaI	GGGCCC	1 cut(s)	79
ApaLI	GTGCAC	1 cut(s)	459
ApoI	RAATTY	2 cut(s)	342, 995
ArsI	GACNNNNNNTTYG	4 cut(s)	139, 171, 781, 813
AseI	ATTAAT	1 cut(s)	480
AspS9I	GGNCC	5 cut(s)	75, 76, 95, 609, 729
AsuC2I	CCSGG	2 cut(s)	94, 723
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	609, 729
BaeGI	GKGCMC	2 cut(s)	79, 463
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	3 cut(s)	450, 763, 1323
Bbv12I	GWGCWC	2 cut(s)	192, 463
BccI	CCATC	6 cut(s)	143, 632, 875, 899, 1137, 1180
BciT130I	CCWGG	4 cut(s)	99, 379, 633, 878
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	2 cut(s)	94, 723
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	873
BfmI	CTRYAG	3 cut(s)	211, 1030, 1176
BmcAI	AGTACT	1 cut(s)	371
Bme1390I	CCNGG	6 cut(s)	94, 99, 379, 633, 723, 878
Bme18I	GGWCC	2 cut(s)	609, 729
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	5 cut(s)	75, 76, 95, 609, 729
BmiI	GGNNCC	4 cut(s)	77, 610, 611, 669
BmrFI	CCNGG	6 cut(s)	94, 99, 379, 633, 723, 878
BoxI	GACNNNNGTC	2 cut(s)	26, 808
BpiI	GAAGAC	3 cut(s)	450, 763, 1323
BpuEI	CTTGAG	1 cut(s)	1285
BpuMI	CCSGG	2 cut(s)	94, 723
BsaBI	GATNNNNATC	2 cut(s)	480, 885
BsaJI	CCNNGG	1 cut(s)	970
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	638, 835, 971, 976
Bse3DI	GCAATG	1 cut(s)	111
Bse8I	GATNNNNATC	2 cut(s)	480, 885
BseBI	CCWGG	4 cut(s)	99, 379, 633, 878
BseDI	CCNNGG	1 cut(s)	970
BseGI	GGATG	4 cut(s)	350, 687, 886, 1022
BseJI	GATNNNNATC	2 cut(s)	480, 885
BseLI	CCNNNNNNNGG	4 cut(s)	638, 835, 971, 976
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	3 cut(s)	132, 615, 1074
BseRI	GAGGAG	2 cut(s)	158, 945
BseSI	GKGCMC	2 cut(s)	79, 463
BshFI	GGCC	4 cut(s)	77, 92, 97, 1128
BsiHKAI	GWGCWC	2 cut(s)	192, 463
BsiSI	CCGG	3 cut(s)	6, 93, 723
BslFI	GGGAC	3 cut(s)	334, 622, 816
BslI	CCNNNNNNNGG	4 cut(s)	638, 835, 971, 976
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	3 cut(s)	334, 622, 816
BsnI	GGCC	4 cut(s)	77, 92, 97, 1128
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	79, 192, 463
Bsp143I	GATC	6 cut(s)	229, 261, 347, 853, 886, 1212
Bsp19I	CCATGG	1 cut(s)	970
BspACI	CCGC	1 cut(s)	707
BspANI	GGCC	4 cut(s)	77, 92, 97, 1128
BspCNI	CTCAG	3 cut(s)	133, 616, 1075
BspHI	TCATGA	1 cut(s)	1201
BspLI	GGNNCC	4 cut(s)	77, 610, 611, 669
BspMAI	CTGCAG	1 cut(s)	1180
BsrDI	GCAATG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	6 cut(s)	229, 261, 347, 853, 886, 1212
BssT1I	CCWWGG	1 cut(s)	970
Bst2UI	CCWGG	4 cut(s)	99, 379, 633, 878
Bst4CI	ACNGT	7 cut(s)	25, 374, 575, 713, 866, 925, 1038
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	5 cut(s)	141, 555, 624, 1083, 1312
BstDSI	CCRYGG	1 cut(s)	970
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	4 cut(s)	350, 687, 886, 1022
BstKTI	GATC	6 cut(s)	232, 264, 350, 856, 889, 1215
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	6 cut(s)	229, 261, 347, 853, 886, 1212
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 299, 981
BstNI	CCWGG	4 cut(s)	99, 379, 633, 878
BstPAI	GACNNNNGTC	2 cut(s)	26, 808
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	6 cut(s)	92, 97, 377, 631, 721, 876
BstSFI	CTRYAG	3 cut(s)	211, 1030, 1176
BstSLI	GKGCMC	2 cut(s)	79, 463
BstV2I	GAAGAC	3 cut(s)	450, 763, 1323
BsuRI	GGCC	4 cut(s)	77, 92, 97, 1128
BtgI	CCRYGG	1 cut(s)	970
BtgZI	GCGATG	1 cut(s)	651
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	4 cut(s)	350, 687, 886, 1022
BtsI	GCAGTG	1 cut(s)	1161
BtsIMutI	CAGTG	2 cut(s)	709, 1161
Cac8I	GCNNGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	1201
Cfr13I	GGNCC	5 cut(s)	75, 76, 95, 609, 729
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	370, 918
CviAII	CATG	9 cut(s)	107, 122, 299, 971, 976, 1090, 1115, 1202, 1328
CviQI	GTAC	2 cut(s)	370, 918
DdeI	CTNAG	5 cut(s)	141, 555, 624, 1083, 1312
DpnI	GATC	6 cut(s)	231, 263, 349, 855, 888, 1214
DpnII	GATC	6 cut(s)	229, 261, 347, 853, 886, 1212
DraI	TTTAAA	2 cut(s)	718, 1227
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	970
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	609, 729
Eco57I	CTGAAG	3 cut(s)	254, 1011, 1187
Eco91I	GGTNACC	1 cut(s)	101
EcoO109I	RGGNCCY	2 cut(s)	76, 609
EcoO65I	GGTNACC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	4 cut(s)	97, 377, 631, 876
EcoT14I	CCWWGG	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	970
FaeI	CATG	9 cut(s)	110, 125, 302, 974, 979, 1093, 1118, 1205, 1331
FalI	AAGNNNNNCTT	2 cut(s)	1308, 1340
FaqI	GGGAC	3 cut(s)	334, 622, 816
FatI	CATG	9 cut(s)	106, 121, 298, 970, 975, 1089, 1114, 1201, 1327
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	1033
FokI	GGATG	4 cut(s)	337, 694, 893, 1009
FriOI	GRGCYC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	873
HaeIII	GGCC	4 cut(s)	77, 92, 97, 1128
HapII	CCGG	3 cut(s)	6, 93, 723
HgaI	GACGC	1 cut(s)	455
Hin1II	CATG	9 cut(s)	110, 125, 302, 974, 979, 1093, 1118, 1205, 1331
HindIII	AAGCTT	1 cut(s)	1309
HinfI	GANTC	5 cut(s)	47, 131, 182, 584, 697
HpaII	CCGG	3 cut(s)	6, 93, 723
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	461, 1034
Hpy188I	TCNGA	7 cut(s)	142, 234, 261, 266, 498, 781, 858
Hpy188III	TCNNGA	9 cut(s)	172, 436, 515, 694, 851, 989, 1165, 1202, 1302
Hpy8I	GTNNAC	2 cut(s)	461, 1034
HpyAV	CCTTC	5 cut(s)	197, 572, 995, 1138, 1334
HpyCH4III	ACNGT	7 cut(s)	25, 374, 575, 713, 866, 925, 1038
HpyCH4IV	ACGT	2 cut(s)	71, 504
HpyCH4V	TGCA	3 cut(s)	461, 540, 1178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 299, 981
HpyF3I	CTNAG	5 cut(s)	141, 555, 624, 1083, 1312
HpySE526I	ACGT	2 cut(s)	71, 504
Hsp92II	CATG	9 cut(s)	110, 125, 302, 974, 979, 1093, 1118, 1205, 1331
KflI	GGGWCCC	1 cut(s)	609
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	229, 261, 347, 853, 886, 1212
LmnI	GCTCC	1 cut(s)	908
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	2 cut(s)	71, 504
MaeIII	GTNAC	2 cut(s)	101, 927
MalI	GATC	6 cut(s)	231, 263, 349, 855, 888, 1214
MboI	GATC	6 cut(s)	229, 261, 347, 853, 886, 1212
MfeI	CAATTG	1 cut(s)	614
MhlI	GDGCHC	3 cut(s)	79, 192, 463
MlyI	GAGTC	3 cut(s)	41, 125, 691
MmeI	TCCRAC	1 cut(s)	1075
MseI	TTAA	5 cut(s)	480, 525, 717, 752, 1226
MspA1I	CMGCKG	2 cut(s)	623, 1029
MspI	CCGG	3 cut(s)	6, 93, 723
MspR9I	CCNGG	6 cut(s)	94, 99, 379, 633, 723, 878
MunI	CAATTG	1 cut(s)	614
MvaI	CCWGG	4 cut(s)	99, 379, 633, 878
MwoI	GCNNNNNNNGC	3 cut(s)	49, 299, 981
NciI	CCSGG	2 cut(s)	94, 723
NcoI	CCATGG	1 cut(s)	970
NdeII	GATC	6 cut(s)	229, 261, 347, 853, 886, 1212
NlaIII	CATG	9 cut(s)	110, 125, 302, 974, 979, 1093, 1118, 1205, 1331
NlaIV	GGNNCC	4 cut(s)	77, 610, 611, 669
NmuCI	GTSAC	2 cut(s)	101, 927
PagI	TCATGA	1 cut(s)	1201
PfeI	GAWTC	2 cut(s)	182, 584
PflFI	GACNNNGTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	976
PleI	GAGTC	3 cut(s)	41, 125, 691
PpsI	GAGTC	3 cut(s)	41, 125, 691
PpuMI	RGGWCCY	1 cut(s)	609
PshAI	GACNNNNGTC	2 cut(s)	26, 808
PshBI	ATTAAT	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	609
Psp6I	CCWGG	4 cut(s)	97, 377, 631, 876
PspEI	GGTNACC	1 cut(s)	101
PspGI	CCWGG	4 cut(s)	97, 377, 631, 876
PspN4I	GGNNCC	4 cut(s)	77, 610, 611, 669
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	5 cut(s)	75, 76, 95, 609, 729
PspPPI	RGGWCCY	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	1180
PsyI	GACNNNGTC	1 cut(s)	107
PvuII	CAGCTG	2 cut(s)	623, 1029
RsaI	GTAC	2 cut(s)	371, 919
RsaNI	GTAC	2 cut(s)	370, 918
SaqAI	TTAA	5 cut(s)	480, 525, 717, 752, 1226
Sau3AI	GATC	6 cut(s)	229, 261, 347, 853, 886, 1212
Sau96I	GGNCC	5 cut(s)	75, 76, 95, 609, 729
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	3 cut(s)	41, 125, 691
ScrFI	CCNGG	6 cut(s)	94, 99, 379, 633, 723, 878
SduI	GDGCHC	3 cut(s)	79, 192, 463
SfcI	CTRYAG	3 cut(s)	211, 1030, 1176
SinI	GGWCC	2 cut(s)	609, 729
SmlI	CTYRAG	1 cut(s)	1300
SmoI	CTYRAG	1 cut(s)	1300
SsiI	CCGC	1 cut(s)	707
SspI	AATATT	1 cut(s)	1019
SspMI	CTAG	1 cut(s)	873
StyD4I	CCNGG	6 cut(s)	92, 97, 377, 631, 721, 876
StyI	CCWWGG	1 cut(s)	970
TaaI	ACNGT	7 cut(s)	25, 374, 575, 713, 866, 925, 1038
TaiI	ACGT	2 cut(s)	74, 507
TaqI	TCGA	6 cut(s)	45, 129, 346, 414, 812, 1266
TatI	WGTACW	2 cut(s)	369, 917
TfiI	GAWTC	2 cut(s)	182, 584
Tru1I	TTAA	5 cut(s)	480, 525, 717, 752, 1226
Tru9I	TTAA	5 cut(s)	480, 525, 717, 752, 1226
TscAI	CASTG	2 cut(s)	716, 1161
TseFI	GTSAC	2 cut(s)	101, 927
Tsp45I	GTSAC	2 cut(s)	101, 927
TspGWI	ACGGA	2 cut(s)	343, 886
TspRI	CASTG	2 cut(s)	716, 1161
Tth111I	GACNNNGTC	1 cut(s)	107
Van91I	CCANNNNNTGG	1 cut(s)	976
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	2 cut(s)	609, 729
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	2 cut(s)	342, 995
XmiI	GTMKAC	1 cut(s)	1033
XspI	CTAG	1 cut(s)	873
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.