Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007644

Physical Location & Seq

Genomic Coordinates Reverse (-)

39795259 .. 39796015

Gene Structure 757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG319700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAACTCTATCAAGACTCAAAATCCACACTGTTTTAAACCCGGTTGGTCCATTCTTCGCTGGACATTTTTAAGAAGACAGCAACACAAGAAGAAATCTGATGAAAAGACATCTGTTTTGGGACGGGTGTCGAAACCATTGAGTTCCCATACGTCGGCTGTTGTTTATCCTGATCAGAAACACAGTAATTCTAGCAGTAATACTAGCCAGGATGGAGATCATTCTTCCGTGCCTGATGGAGTAAGTAGTACAACTGTGTCACTTGGCTCTAATGGAATCTTCCCTCCTCTAACCCCTAACCATGGCATGGAGAGCCTTCCTGAAGAATTTTTAGATTTATGTAAGAAATATTCATCCAGCTGTAGACTGTTTAGCTACGAGGAACTTTTGTTGGCAACATCAAACTTCTTACCTGAGAACATGGTTGGAAAAGGTGGCAGTAGTCATGTTTATAGAGGCCATCTTTTAGACAGGAAGGAGTTGGCAGTGAAAATCCTGAAGCCATCTGCAGATATATTGAAAGAGTTTGTTCATGAAGTTGAGATCATCACAACTTTAAATCACAAGAACATAATCTCTCTATATGGATTATGTTTCGACAACAATTTAGTTTTGGTGTATGATTTTATCTCAAGAGGAAGCTTAGAAGACAACCTACATGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

222

Amino Acids

24.8

Weight (kDa)

8.29

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	140 - 220	1.4e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	140 - 219	1.3e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63940
fragaria_vesca	FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700
malus_domestica	MD15G1134800.v1.1
prunus_persica	Prupe.4G275600_v2.0.a1
pyrus_communis	pycom15g12160
rosa_chinensis	RchiOBHm_Chr2g0122201
rosa_laevigata	RLG00000018670
rosa_multiflora	Rmu_co8318615.1_g000001 Rmu_sc0003133.1_g000014 Rmu_sc0013150.1_g000002 Rmu_sc0025362.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121770
rosa_rugosa	Rorug02G0237200 Rorug05G0310500
rosa_samantha	Rh2AG295700 Rh2BG304700 Rh2CG283100 Rh2DG319700
rosa_wichuraiana	Rw2G023550 Rw2G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	342, 518
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	3 cut(s)	154, 302, 307
AgsI	TTSAA	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	360, 375, 642
AluI	AGCT	3 cut(s)	360, 375, 642
AoxI	GGCC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	82, 654
BccI	CCATC	4 cut(s)	206, 230, 468, 511
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	42
BfaI	CTAG	2 cut(s)	192, 204
BfmI	CTRYAG	2 cut(s)	361, 507
Bme1390I	CCNGG	2 cut(s)	42, 209
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	42, 209
BoxI	GACNNNNGTC	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	82, 654
BpuEI	CTTGAG	1 cut(s)	616
BpuMI	CCSGG	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 302, 307
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	2 cut(s)	217, 353
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	154, 302, 307
BseMII	CTCAG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	154, 302, 307
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	172, 217, 543
Bsp19I	CCATGG	1 cut(s)	301
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	172, 217, 543
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	4 cut(s)	32, 185, 256, 369
BstDEI	CTNAG	2 cut(s)	414, 643
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	217, 353
BstKTI	GATC	3 cut(s)	175, 220, 546
BstMBI	GATC	3 cut(s)	172, 217, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	209
BstPAI	GACNNNNGTC	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	40, 207
BstSFI	CTRYAG	2 cut(s)	361, 507
BstV2I	GAAGAC	2 cut(s)	82, 654
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	217, 353
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	28, 492
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	6 cut(s)	302, 307, 421, 446, 533, 659
CviJI	RGCY	9 cut(s)	158, 207, 267, 315, 360, 375, 459, 502, 642
CviKI_1	RGCY	9 cut(s)	158, 207, 267, 315, 360, 375, 459, 502, 642
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	414, 643
DpnI	GATC	3 cut(s)	174, 219, 545
DpnII	GATC	3 cut(s)	172, 217, 543
DraI	TTTAAA	2 cut(s)	37, 558
Eco130I	CCWWGG	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	342, 518
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	6 cut(s)	305, 310, 424, 449, 536, 662
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	6 cut(s)	301, 306, 420, 445, 532, 658
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	364
FokI	GGATG	2 cut(s)	224, 340
FspBI	CTAG	2 cut(s)	192, 204
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	6 cut(s)	305, 310, 424, 449, 536, 662
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	2 cut(s)	16, 276
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	100, 177
Hpy188III	TCNNGA	6 cut(s)	13, 170, 320, 496, 533, 633
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	326, 469
HpyCH4III	ACNGT	4 cut(s)	32, 185, 256, 369
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	2 cut(s)	414, 643
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	6 cut(s)	305, 310, 424, 449, 536, 662
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	172, 217, 543
MaeI	CTAG	2 cut(s)	192, 204
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	3 cut(s)	174, 219, 545
MboI	GATC	3 cut(s)	172, 217, 543
MboII	GAAGA	7 cut(s)	47, 87, 103, 216, 271, 335, 659
MluCI	AATT	3 cut(s)	187, 326, 604
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	5 cut(s)	294, 297, 373, 449, 629
MseI	TTAA	3 cut(s)	36, 71, 557
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	42, 209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	3 cut(s)	172, 217, 543
NlaIII	CATG	6 cut(s)	305, 310, 424, 449, 536, 662
NmuCI	GTSAC	1 cut(s)	258
PagI	TCATGA	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	307
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PshAI	GACNNNNGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	36, 71, 557
Sau3AI	GATC	3 cut(s)	172, 217, 543
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	42, 209
SetI	ASST	7 cut(s)	155, 362, 377, 415, 436, 644, 657
SfcI	CTRYAG	2 cut(s)	361, 507
SinI	GGWCC	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	3 cut(s)	187, 326, 604
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	2 cut(s)	192, 204
StyD4I	CCNGG	2 cut(s)	40, 207
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	4 cut(s)	32, 185, 256, 369
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	2 cut(s)	131, 597
TasI	AATT	3 cut(s)	187, 326, 604
TatI	WGTACW	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	3 cut(s)	36, 71, 557
Tru9I	TTAA	3 cut(s)	36, 71, 557
TscAI	CASTG	2 cut(s)	35, 492
TseFI	GTSAC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	5 cut(s)	17, 117, 342, 521, 549
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	35, 492
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	2 cut(s)	192, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.