Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8334599.1

Orthogroup ID

OG0008393

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 986

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8334599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 338 bp

gtgatgatggctctgtgcatttgtgggacacaactggtcgtagcccaaagatttcttggttgaagcagcattctgcaccaactgctggtatcagtttctcaccgtcaaatgacaagatgtttgctagtgtcgggctcgataaaaagttgtatacttacgactcaggttctaggagacattcatcttgcatctcctatgaggcacctttttctgcattggcatttagagatgatggctgggtactagcagctggaacaagtagtggtcgtgttgtattttatgatgtccgtggtaaaccagagccttttactgttcttcgtgcctataatagttcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000242 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0005929 GO:0007049 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0009553 GO:0009555 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032506 GO:0032886 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0036064 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044380 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044463 GO:0044464 GO:0045787 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051726 GO:0051781 GO:0060236 GO:0061640 GO:0065007 GO:0070507 GO:0070727 GO:0071539 GO:0071840 GO:0072698 GO:0090068 GO:0090224 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120038 GO:1902410 GO:1903047 GO:1905508 GO:2000694

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

112

Amino Acids

12.3

Weight (kDa)

8.07

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05970 AT5G05970
fragaria_vesca	FvH4_7g23510 FvH4_7g23510 FvH4_7g23510
malus_domestica	MD01G1140700.v1.1 MD07G1205000.v1.1
prunus_persica	Prupe.2G241200_v2.0.a1 Prupe.2G241200_v2.0.a1
pyrus_communis	pycom01g16130 pycom07g19150
rosa_chinensis	RchiOBHm_Chr1g0368661 RchiOBHm_Chr4g0410231
rosa_laevigata	RLG00000027199
rosa_multiflora	Rmu_co8334599.1_g000001 Rmu_sc0001791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288380
rosa_rugosa	Rorug01G0343400
rosa_samantha	Rh1AG350800 Rh1BG314500 Rh1CG329200 Rh1DG346100
rosa_wichuraiana	Rw0G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	151
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	66, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AsuHPI	GGTGA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	78, 259
BccI	CCATC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	3 cut(s)	125, 170, 244
BisI	GCNGC	2 cut(s)	67, 248
BlsI	GCNGC	2 cut(s)	68, 249
BmiI	GGNNCC	1 cut(s)	203
BmsI	GCATC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	78, 259
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	288
BssNAI	GTATAC	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	104, 312
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	78, 259
BstZ17I	GTATAC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	241
CviJI	RGCY	6 cut(s)	11, 44, 135, 236, 250, 303
CviKI_1	RGCY	6 cut(s)	11, 44, 135, 236, 250, 303
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	137
FaiI	YATR	4 cut(s)	152, 197, 281, 326
FaqI	GGGAC	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	67, 248
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	67, 248
FspBI	CTAG	3 cut(s)	125, 170, 244
GluI	GCNGC	2 cut(s)	67, 248
GsaI	CCCAGC	1 cut(s)	240
HinfI	GANTC	1 cut(s)	160
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	152, 295
Hpy188I	TCNGA	1 cut(s)	336
Hpy8I	GTNNAC	2 cut(s)	152, 295
HpyCH4III	ACNGT	2 cut(s)	104, 312
HpyCH4V	TGCA	4 cut(s)	18, 76, 188, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	162
LpnPI	CCDG	6 cut(s)	20, 71, 149, 222, 236, 311
Lsp1109I	GCAGC	2 cut(s)	78, 259
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	3 cut(s)	125, 170, 244
MboII	GAAGA	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	68, 249
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SatI	GCNGC	2 cut(s)	67, 248
SchI	GAGTC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	3 cut(s)	168, 207, 252
SfaNI	GCATC	1 cut(s)	197
SspMI	CTAG	3 cut(s)	125, 170, 244
TaaI	ACNGT	2 cut(s)	104, 312
TaqI	TCGA	1 cut(s)	137
TseI	GCWGC	2 cut(s)	66, 247
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	3 cut(s)	125, 170, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.