Rmu_sc0001791.1_g000011

WD40 repeats

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001791.1
Physical Location & Seq
Reverse (-)
56473 .. 58810
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001791.1_g000011.1.cds

Sequence Viewer

Length: 1512 bp
atgggaaagcaatctcatactgttgcatctcctggaataaggagaggtcgatgggttcctgaggaggacaagaagctctttgctttcgttcaacaacatggccatggaagctggaattccctaccccagaaagctggagatgctgttgaagattcaatccttatgcctgatccacttccttctgtgacgtcatcaaacctttctctatctatggcagtatctagttctcggaatccaggccgttctggtttatctgctgatacattttcagttacagcaactggcagtggattagcgtcaaccacacttaatgtttctactgcagaggatacaccacatcgcgggcatttgtggccaggtggaacattgtcaagattgcatgctcctcgatctacttttaacttcaaggatgatatggaggtattttcccctcttgtggatgttcatcctatcacacctacacttgacaagctgtgggatgatcatgacagatcaaagaaggatagtgtagataagaagccttcatcactattatttccctcgtccagtaggaggttcccattggcagaggatgtgtcaagtgatcatccaatatttgattggaagcctagctcagcttctaaacaggatgacagcaaatcttcatttgctcgattagaatcaactcctgctccgtattccaagagtgaagactcatccatcacccctccagaagcttggggcggtgaaagattatctgataagtataccaacctgcttcagccaaacattatgccatctcgctttgggatgtcagctcagacatcaggatcacttatatctggattaccagatacatccttatcaacaagtcagacaagtattagctctacaagcttaaactatgcgaatatgcgtattaaagatgtctctttcaatcacgagaattccttgggatttccagaactccttaactctagtgccatgcctatgtcccctggtagcaaaggaatcatgggacagtctagccttgattcaccaacatcgtctttgaccctccatcggagattctctacttatgcagagaggataggcactacatcttccttcagtgaccgaacatcactcgcagtgggttcaccaaaaacaaagaaaacaggagctgaaatgagagaattgttaactagcttggtgtcaaagtcagatacatcaactgccacagaatcagggattcttccagcaatgaacggaggaacctcacaactgcagaaggtccctcaacaagatgcacagcagggaaattcctttacatttcagatttttcaacgtactctagaagagactcttgattcctttcagaaatcagtacatgaagatatgaggaaccttcatatagaaattttaagacaattccacatgcaagagacggatatgtcaacggtaatgagtaaaattctggcaaaccaagctgagctaatggaagaagttaaatctctgcggaaagaaaaccagcaactccggcaattgctttga

Protein Analysis

503

Amino Acids

55.02

Weight (kDa)

6.29

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1411
AatII GACGTC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 762
AccI GTMKAC 1 cut(s) 746
AccII CGCG 1 cut(s) 342
AciI CCGC 3 cut(s) 342, 723, 1477
AclWI GGATC 2 cut(s) 164, 817
AcoI YGGCCR 2 cut(s) 100, 353
AcsI RAATTY 5 cut(s) 115, 925, 1279, 1377, 1431
AcuI CTGAAG 2 cut(s) 743, 1072
AcyI GRCGYC 1 cut(s) 188
AfaI GTAC 2 cut(s) 1309, 1347
AfiI CCNNNNNNNGG 4 cut(s) 341, 436, 552, 1041
AgsI TTSAA 6 cut(s) 92, 149, 156, 406, 916, 1304
AjnI CCWGG 4 cut(s) 31, 235, 355, 976
Alw26I GTCTC 3 cut(s) 913, 1313, 1397
AlwI GGATC 2 cut(s) 164, 817
AlwNI CAGNNNCTG 2 cut(s) 281, 1142
AoxI GGCC 3 cut(s) 100, 238, 353
ApoI RAATTY 5 cut(s) 115, 925, 1279, 1377, 1431
AspS9I GGNCC 1 cut(s) 1252
AsuHPI GGTGA 4 cut(s) 694, 737, 1008, 1110
AvaII GGWCC 1 cut(s) 1252
AxyI CCTNAGG 1 cut(s) 60
BalI TGGCCA 2 cut(s) 102, 355
BauI CACGAG 1 cut(s) 920
BbsI GAAGAC 1 cut(s) 696
BccI CCATC 4 cut(s) 45, 707, 784, 1047
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 4 cut(s) 33, 237, 357, 978
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 2 cut(s) 481, 583
BcoDI GTCTC 3 cut(s) 913, 1313, 1397
BfaI CTAG 6 cut(s) 222, 609, 957, 1005, 1164, 1313
BfmI CTRYAG 2 cut(s) 321, 1244
BfuAI ACCTGC 1 cut(s) 762
BfuI GTATCC 1 cut(s) 322
BlpI GCTNAGC 2 cut(s) 613, 1449
Bme1390I CCNGG 4 cut(s) 33, 237, 357, 978
Bme18I GGWCC 1 cut(s) 1252
BmgT120I GGNCC 1 cut(s) 1252
BmiI GGNNCC 5 cut(s) 57, 557, 1234, 1254, 1364
BmrFI CCNGG 4 cut(s) 33, 237, 357, 978
BmsI GCATC 3 cut(s) 35, 130, 1255
BpiI GAAGAC 1 cut(s) 696
BpmI CTGGAG 2 cut(s) 156, 693
Bpu1102I GCTNAGC 2 cut(s) 613, 1449
BsaBI GATNNNNATC 2 cut(s) 444, 658
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 103, 930, 976
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 655, 685
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 436, 552, 1041
Bse1I ACTGG 2 cut(s) 286, 546
Bse21I CCTNAGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 1227
Bse8I GATNNNNATC 2 cut(s) 444, 658
BseBI CCWGG 4 cut(s) 33, 237, 357, 978
BseDI CCNNGG 3 cut(s) 103, 930, 976
BseJI GATNNNNATC 2 cut(s) 444, 658
BseLI CCNNNNNNNGG 4 cut(s) 341, 436, 552, 1041
BseMI GCAATG 1 cut(s) 1227
BseMII CTCAG 4 cut(s) 51, 627, 812, 1440
BseNI ACTGG 2 cut(s) 286, 546
BseRI GAGGAG 2 cut(s) 77, 375
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 3 cut(s) 102, 240, 355
BsiSI CCGG 1 cut(s) 1498
BslFI GGGAC 3 cut(s) 958, 1011, 1238
BslI CCNNNNNNNGG 4 cut(s) 341, 436, 552, 1041
BsmAI GTCTC 3 cut(s) 913, 1313, 1397
BsmBI CGTCTC 1 cut(s) 1397
BsmFI GGGAC 3 cut(s) 958, 1011, 1238
BsnI GGCC 3 cut(s) 102, 240, 355
Bsp143I GATC 6 cut(s) 169, 389, 481, 491, 583, 809
Bsp1720I GCTNAGC 2 cut(s) 613, 1449
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 3 cut(s) 342, 723, 1477
BspANI GGCC 3 cut(s) 102, 240, 355
BspCNI CTCAG 4 cut(s) 52, 626, 811, 1441
BspFNI CGCG 1 cut(s) 342
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 5 cut(s) 57, 557, 1234, 1254, 1364
BspMAI CTGCAG 2 cut(s) 325, 1248
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 2 cut(s) 164, 817
BsrDI GCAATG 1 cut(s) 1227
BsrI ACTGG 2 cut(s) 286, 546
BssECI CCNNGG 3 cut(s) 103, 930, 976
BssMI GATC 6 cut(s) 169, 389, 481, 491, 583, 809
BssNAI GTATAC 1 cut(s) 747
BssNI GRCGYC 1 cut(s) 188
BssSI CACGAG 1 cut(s) 920
BssT1I CCWWGG 2 cut(s) 103, 930
Bst1107I GTATAC 1 cut(s) 747
Bst2BI CACGAG 1 cut(s) 920
Bst2UI CCWGG 4 cut(s) 33, 237, 357, 978
Bst4CI ACNGT 3 cut(s) 22, 1002, 1420
Bst6I CTCTTC 1 cut(s) 1311
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 344, 381
BstDEI CTNAG 4 cut(s) 60, 613, 798, 1449
BstDSI CCRYGG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 6 cut(s) 172, 392, 484, 494, 586, 812
BstMAI GTCTC 3 cut(s) 913, 1313, 1397
BstMBI GATC 6 cut(s) 169, 389, 481, 491, 583, 809
BstMWI GCNNNNNNNGC 6 cut(s) 108, 140, 352, 873, 1445, 1498
BstNI CCWGG 4 cut(s) 33, 237, 357, 978
BstNSI RCATGY 2 cut(s) 383, 1399
BstSCI CCNGG 4 cut(s) 31, 235, 355, 976
BstSFI CTRYAG 2 cut(s) 321, 1244
BstUI CGCG 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 696
BstXI CCANNNNNNTGG 2 cut(s) 134, 717
BstZ17I GTATAC 1 cut(s) 747
Bsu36I CCTNAGG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 3 cut(s) 102, 240, 355
BtgI CCRYGG 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 323
BtsI GCAGTG 2 cut(s) 292, 1116
BtsIMutI CAGTG 3 cut(s) 292, 1096, 1116
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 2 cut(s) 344, 381
CaiI CAGNNNCTG 2 cut(s) 281, 1142
CciI TCATGA 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 1252
CseI GACGC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 1308, 1346
CviAII CATG 8 cut(s) 98, 104, 380, 485, 964, 994, 1349, 1396
CviQI GTAC 2 cut(s) 1308, 1346
DdeI CTNAG 4 cut(s) 60, 613, 798, 1449
DpnI GATC 6 cut(s) 171, 391, 483, 493, 585, 811
DpnII GATC 6 cut(s) 169, 389, 481, 491, 583, 809
DrdI GACNNNNNNGTC 1 cut(s) 1411
DseDI GACNNNNNNGTC 1 cut(s) 1411
EaeI YGGCCR 2 cut(s) 100, 353
Eam1104I CTCTTC 1 cut(s) 1311
EarI CTCTTC 1 cut(s) 1311
Eco130I CCWWGG 2 cut(s) 103, 930
Eco47I GGWCC 1 cut(s) 1252
Eco57I CTGAAG 2 cut(s) 743, 1072
Eco81I CCTNAGG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 1252
EcoRI GAATTC 2 cut(s) 115, 925
EcoRII CCWGG 4 cut(s) 31, 235, 355, 976
EcoT14I CCWWGG 2 cut(s) 103, 930
ErhI CCWWGG 2 cut(s) 103, 930
Esp3I CGTCTC 1 cut(s) 1397
FaeI CATG 8 cut(s) 101, 107, 383, 488, 967, 997, 1352, 1399
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 1308, 1340
FaqI GGGAC 3 cut(s) 958, 1011, 1238
FatI CATG 8 cut(s) 97, 103, 379, 484, 963, 993, 1348, 1395
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 2 cut(s) 481, 583
FblI GTMKAC 1 cut(s) 746
FspBI CTAG 6 cut(s) 222, 609, 957, 1005, 1164, 1313
GsuI CTGGAG 2 cut(s) 156, 693
HaeIII GGCC 3 cut(s) 102, 240, 355
HapII CCGG 1 cut(s) 1498
HgaI GACGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 8 cut(s) 101, 107, 383, 488, 967, 997, 1352, 1399
HincII GTYRAC 3 cut(s) 300, 1161, 1416
HindII GTYRAC 3 cut(s) 300, 1161, 1416
HindIII AAGCTT 2 cut(s) 714, 874
HpaI GTTAAC 1 cut(s) 1161
HpaII CCGG 1 cut(s) 1498
HphI GGTGA 4 cut(s) 694, 737, 1008, 1110
Hpy166II GTNNAC 5 cut(s) 300, 747, 1118, 1161, 1416
Hpy188I TCNGA 8 cut(s) 231, 739, 801, 855, 1044, 1183, 1296, 1338
Hpy8I GTNNAC 5 cut(s) 300, 747, 1118, 1161, 1416
HpyAV CCTTC 6 cut(s) 189, 493, 531, 1096, 1243, 1376
HpyCH4III ACNGT 3 cut(s) 22, 1002, 1420
HpyCH4IV ACGT 2 cut(s) 188, 1306
HpyCH4V TGCA 7 cut(s) 26, 323, 379, 1061, 1246, 1268, 1399
HpyF10VI GCNNNNNNNGC 6 cut(s) 108, 140, 352, 873, 1445, 1498
HpyF3I CTNAG 4 cut(s) 60, 613, 798, 1449
HpySE526I ACGT 2 cut(s) 188, 1306
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 8 cut(s) 101, 107, 383, 488, 967, 997, 1352, 1399
Ksp22I TGATCA 2 cut(s) 481, 583
KspAI GTTAAC 1 cut(s) 1161
Kzo9I GATC 6 cut(s) 169, 389, 481, 491, 583, 809
LmnI GCTCC 3 cut(s) 388, 676, 1139
LweI GCATC 3 cut(s) 35, 130, 1255
MaeI CTAG 6 cut(s) 222, 609, 957, 1005, 1164, 1313
MaeII ACGT 2 cut(s) 188, 1306
MaeIII GTNAC 3 cut(s) 184, 271, 1091
MalI GATC 6 cut(s) 171, 391, 483, 493, 585, 811
MboI GATC 6 cut(s) 169, 389, 481, 491, 583, 809
MboII GAAGA 8 cut(s) 161, 633, 701, 1074, 1205, 1328, 1364, 1472
MfeI CAATTG 1 cut(s) 1502
MlsI TGGCCA 2 cut(s) 102, 355
MluCI AATT 8 cut(s) 115, 925, 1154, 1279, 1377, 1388, 1431, 1502
MluNI TGGCCA 2 cut(s) 102, 355
MlyI GAGTC 2 cut(s) 686, 1315
Mox20I TGGCCA 2 cut(s) 102, 355
MscI TGGCCA 2 cut(s) 102, 355
MseI TTAA 8 cut(s) 309, 399, 878, 900, 951, 1160, 1382, 1467
MslI CAYNNNNRTG 2 cut(s) 102, 968
Msp20I TGGCCA 2 cut(s) 102, 355
MspI CCGG 1 cut(s) 1498
MspR9I CCNGG 4 cut(s) 33, 237, 357, 978
MunI CAATTG 1 cut(s) 1502
MvaI CCWGG 4 cut(s) 33, 237, 357, 978
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 6 cut(s) 108, 140, 352, 873, 1445, 1498
NcoI CCATGG 1 cut(s) 103
NdeII GATC 6 cut(s) 169, 389, 481, 491, 583, 809
NlaIII CATG 8 cut(s) 101, 107, 383, 488, 967, 997, 1352, 1399
NlaIV GGNNCC 5 cut(s) 57, 557, 1234, 1254, 1364
NmuCI GTSAC 2 cut(s) 184, 1091
NspI RCATGY 2 cut(s) 383, 1399
PaeI GCATGC 1 cut(s) 383
PagI TCATGA 1 cut(s) 484
PfeI GAWTC 9 cut(s) 152, 232, 659, 990, 1013, 1047, 1202, 1210, 1328
PfoI TCCNGGA 1 cut(s) 31
PleI GAGTC 2 cut(s) 686, 1315
PpsI GAGTC 2 cut(s) 686, 1315
PpuMI RGGWCCY 1 cut(s) 1252
Psp5II RGGWCCY 1 cut(s) 1252
Psp6I CCWGG 4 cut(s) 31, 235, 355, 976
PspGI CCWGG 4 cut(s) 31, 235, 355, 976
PspN4I GGNNCC 5 cut(s) 57, 557, 1234, 1254, 1364
PspPI GGNCC 1 cut(s) 1252
PspPPI RGGWCCY 1 cut(s) 1252
PstI CTGCAG 2 cut(s) 325, 1248
PstNI CAGNNNCTG 2 cut(s) 281, 1142
RsaI GTAC 2 cut(s) 1309, 1347
RsaNI GTAC 2 cut(s) 1308, 1346
RseI CAYNNNNRTG 2 cut(s) 102, 968
SaqAI TTAA 8 cut(s) 309, 399, 878, 900, 951, 1160, 1382, 1467
Sau3AI GATC 6 cut(s) 169, 389, 481, 491, 583, 809
Sau96I GGNCC 1 cut(s) 1252
SchI GAGTC 2 cut(s) 686, 1315
ScrFI CCNGG 4 cut(s) 33, 237, 357, 978
SfaNI GCATC 3 cut(s) 35, 130, 1255
SfcI CTRYAG 2 cut(s) 321, 1244
SinI GGWCC 1 cut(s) 1252
SmiMI CAYNNNNRTG 2 cut(s) 102, 968
SphI GCATGC 1 cut(s) 383
Sse9I AATT 8 cut(s) 115, 925, 1154, 1279, 1377, 1388, 1431, 1502
SsiI CCGC 3 cut(s) 342, 723, 1477
SspI AATATT 1 cut(s) 594
SspMI CTAG 6 cut(s) 222, 609, 957, 1005, 1164, 1313
StyD4I CCNGG 4 cut(s) 31, 235, 355, 976
StyI CCWWGG 2 cut(s) 103, 930
TaaI ACNGT 3 cut(s) 22, 1002, 1420
TaiI ACGT 2 cut(s) 191, 1309
TaqI TCGA 3 cut(s) 49, 388, 652
TaqII GACCGA 1 cut(s) 1110
TasI AATT 8 cut(s) 115, 925, 1154, 1279, 1377, 1388, 1431, 1502
TatI WGTACW 1 cut(s) 1345
TfiI GAWTC 9 cut(s) 152, 232, 659, 990, 1013, 1047, 1202, 1210, 1328
Tru1I TTAA 8 cut(s) 309, 399, 878, 900, 951, 1160, 1382, 1467
Tru9I TTAA 8 cut(s) 309, 399, 878, 900, 951, 1160, 1382, 1467
TscAI CASTG 3 cut(s) 292, 1096, 1116
TseFI GTSAC 2 cut(s) 184, 1091
Tsp45I GTSAC 2 cut(s) 184, 1091
TspDTI ATGAA 6 cut(s) 434, 513, 633, 1238, 1358, 1365
TspGWI ACGGA 3 cut(s) 663, 1242, 1421
TspRI CASTG 3 cut(s) 292, 1096, 1116
VpaK11BI GGWCC 1 cut(s) 1252
XapI RAATTY 5 cut(s) 115, 925, 1279, 1377, 1431
XbaI TCTAGA 1 cut(s) 1312
XceI RCATGY 2 cut(s) 383, 1399
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XmiI GTMKAC 1 cut(s) 746
XspI CTAG 6 cut(s) 222, 609, 957, 1005, 1164, 1313
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.