Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008393

Physical Location & Seq

Genomic Coordinates Reverse (-)

60360559 .. 60361908

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 892 bp

ATGTTTGCTAGTGTCGGGCTCGATAAAAAGTTGTATACTTACGACTCAGGGTCGAGGAGACATTCATCTTGCATCTCCTATGAGGCACCTTTTTCTGCATTGGCATTTAGAGATGATGGCTGGGTACTAGCAGCTGGAACAAGTAGTGGTCGTGTTGTATTTTATGATGTCCGTGGTAAACCAGAGCCTTTTACTGTTCTTCGTGCTTATAATAGTTCAGAGGCTGTTACAAGTTTATGCTGGCAAAGGTCAAAACCTGTCATTGTAAATGAAAGCAGTTGTTCTGTTGAGACTGCGCTTTTAGGAGATGCTGTTGAAGATTCAATCCTTATGCCTGATCCACTTCCTTCTGTGACTTCATCAAACCTTTCTCTATCTATGGCAGTATCTAGTTCTCGGAATCCAGGCCGTTCTGGTTTATCTGCTGATACATTTTCAGTTACAGCAACTGGCAGTGGATTAGCGTCAACCACACTTAATGTTTTTACTGCAGAGGATACACCACATCGCGGGCATTTGTGGCCAGGTGGAACATTGTCAAGATTGCATGCTCCTCGATCTACTTTTAACTTCAAGGATGATATGGAGGTATTTTCCCCTCTTGTGGATGTTCATCCTATCACACCTACACTCGACAAGCTGTGGGATGATCATGACAGATCAAAGAAGGATAGTGTAGATAAGAAGCCTTCATCACTATTATTTCCCTCGTCCAGTAGGAGGTTCCCATTGGCAGAGGATGTGTCAAGTGATCATCCAATATTTGATTGGAAGCCTAGCTCAGCTTGTAAACAGGATGACAGCAAATCTTCGTTTGCTCGATTAGAATCAACTCCTGCTCCGTATTCCAAGAGTGAAGATTCATCCATCACCCCTCCAGAAGCTTGGGGCG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000242 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0005929 GO:0007049 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0009553 GO:0009555 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032506 GO:0032886 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0036064 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044380 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044463 GO:0044464 GO:0045787 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051726 GO:0051781 GO:0060236 GO:0061640 GO:0065007 GO:0070507 GO:0070727 GO:0071539 GO:0071840 GO:0072698 GO:0090068 GO:0090224 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120038 GO:1902410 GO:1903047 GO:1905508 GO:2000694

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

297

Amino Acids

32.25

Weight (kDa)

5.51

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	4 - 85	3.1e-06	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05970 AT5G05970
fragaria_vesca	FvH4_7g23510 FvH4_7g23510 FvH4_7g23510
malus_domestica	MD01G1140700.v1.1 MD07G1205000.v1.1
prunus_persica	Prupe.2G241200_v2.0.a1 Prupe.2G241200_v2.0.a1
pyrus_communis	pycom01g16130 pycom07g19150
rosa_chinensis	RchiOBHm_Chr1g0368661 RchiOBHm_Chr4g0410231
rosa_laevigata	RLG00000027199
rosa_multiflora	Rmu_co8334599.1_g000001 Rmu_sc0001791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288380
rosa_rugosa	Rorug01G0343400
rosa_samantha	Rh1AG350800 Rh1BG314500 Rh1CG329200 Rh1DG346100
rosa_wichuraiana	Rw0G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	35
AccII	CGCG	1 cut(s)	510
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	521
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	509, 604, 720
AgsI	TTSAA	3 cut(s)	317, 324, 574
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	403, 523
AluBI	AGCT	5 cut(s)	134, 640, 780, 785, 884
AluI	AGCT	5 cut(s)	134, 640, 780, 785, 884
Alw26I	GTCTC	2 cut(s)	52, 284
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	2 cut(s)	224, 449
AoxI	GGCC	2 cut(s)	406, 521
ApeKI	GCWGC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	862
BalI	TGGCCA	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	110, 875
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	2 cut(s)	405, 525
BciVI	GTATCC	1 cut(s)	490
BclI	TGATCA	2 cut(s)	649, 751
BcoDI	GTCTC	2 cut(s)	52, 284
BfaI	CTAG	4 cut(s)	9, 128, 390, 777
BfmI	CTRYAG	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	490
BisI	GCNGC	1 cut(s)	132
BlpI	GCTNAGC	1 cut(s)	781
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	405, 525
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	87, 725
BmrFI	CCNGG	2 cut(s)	405, 525
BmsI	GCATC	2 cut(s)	81, 298
BpmI	CTGGAG	1 cut(s)	861
Bpu1102I	GCTNAGC	1 cut(s)	781
BsaBI	GATNNNNATC	2 cut(s)	612, 826
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	4 cut(s)	297, 327, 823, 853
Bsc4I	CCNNNNNNNGG	3 cut(s)	509, 604, 720
Bse1I	ACTGG	2 cut(s)	454, 714
Bse8I	GATNNNNATC	2 cut(s)	612, 826
BseBI	CCWGG	2 cut(s)	405, 525
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	8 cut(s)	583, 613, 613, 652, 745, 754, 802, 863
BseJI	GATNNNNATC	2 cut(s)	612, 826
BseLI	CCNNNNNNNGG	3 cut(s)	509, 604, 720
BseMII	CTCAG	2 cut(s)	60, 795
BseNI	ACTGG	2 cut(s)	454, 714
BseRI	GAGGAG	2 cut(s)	70, 543
BseXI	GCAGC	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	408, 523
BshNI	GGYRCC	1 cut(s)	85
BslI	CCNNNNNNNGG	3 cut(s)	509, 604, 720
BsmAI	GTCTC	2 cut(s)	52, 284
BsnI	GGCC	2 cut(s)	408, 523
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	5 cut(s)	337, 557, 649, 659, 751
Bsp1720I	GCTNAGC	1 cut(s)	781
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	2 cut(s)	408, 523
BspCNI	CTCAG	2 cut(s)	59, 794
BspFNI	CGCG	1 cut(s)	510
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	2 cut(s)	87, 725
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	454, 714
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	5 cut(s)	337, 557, 649, 659, 751
BssNAI	GTATAC	1 cut(s)	36
Bst1107I	GTATAC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	405, 525
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	242, 512, 549
BstDEI	CTNAG	2 cut(s)	46, 781
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	8 cut(s)	583, 613, 613, 652, 745, 754, 802, 863
BstFNI	CGCG	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	5 cut(s)	340, 560, 652, 662, 754
BstMAI	GTCTC	2 cut(s)	52, 284
BstMBI	GATC	5 cut(s)	337, 557, 649, 659, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	520
BstNI	CCWGG	2 cut(s)	405, 525
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	2 cut(s)	403, 523
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	885
BstZ17I	GTATAC	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	408, 523
BtgI	CCRYGG	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	491
BtsCI	GGATG	8 cut(s)	583, 613, 613, 652, 745, 754, 802, 863
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	242, 512, 549
CaiI	CAGNNNCTG	2 cut(s)	224, 449
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	1 cut(s)	298
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	548, 653
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	2 cut(s)	46, 781
DpnI	GATC	5 cut(s)	339, 559, 651, 661, 753
DpnII	GATC	5 cut(s)	337, 557, 649, 659, 751
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	521
Eam1105I	GACNNNNNGTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	403, 523
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	551, 656
FatI	CATG	2 cut(s)	547, 652
FauI	CCCGC	1 cut(s)	503
FbaI	TGATCA	2 cut(s)	649, 751
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	8 cut(s)	590, 600, 620, 659, 741, 752, 809, 850
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	4 cut(s)	9, 128, 390, 777
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	2 cut(s)	408, 523
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	551, 656
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	882
HinfI	GANTC	5 cut(s)	44, 320, 400, 827, 860
HphI	GGTGA	1 cut(s)	862
Hpy166II	GTNNAC	4 cut(s)	36, 179, 468, 791
Hpy188I	TCNGA	2 cut(s)	220, 399
Hpy188III	TCNNGA	3 cut(s)	540, 653, 878
Hpy8I	GTNNAC	4 cut(s)	36, 179, 468, 791
HpyAV	CCTTC	3 cut(s)	357, 661, 699
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	72, 98, 491, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	520
HpyF3I	CTNAG	2 cut(s)	46, 781
Hsp92II	CATG	2 cut(s)	551, 656
HspAI	GCGC	1 cut(s)	296
Ksp22I	TGATCA	2 cut(s)	649, 751
Kzo9I	GATC	5 cut(s)	337, 557, 649, 659, 751
LmnI	GCTCC	2 cut(s)	556, 844
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	2 cut(s)	81, 298
MaeI	CTAG	4 cut(s)	9, 128, 390, 777
MaeIII	GTNAC	3 cut(s)	226, 352, 439
MalI	GATC	5 cut(s)	339, 559, 651, 661, 753
MboI	GATC	5 cut(s)	337, 557, 649, 659, 751
MboII	GAAGA	4 cut(s)	191, 329, 801, 869
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	523
MluNI	TGGCCA	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	38
Mox20I	TGGCCA	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	523
MseI	TTAA	2 cut(s)	477, 567
Msp20I	TGGCCA	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	405, 525
MvaI	CCWGG	2 cut(s)	405, 525
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	520
NdeII	GATC	5 cut(s)	337, 557, 649, 659, 751
NlaIII	CATG	2 cut(s)	551, 656
NlaIV	GGNNCC	2 cut(s)	87, 725
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	551
PagI	TCATGA	1 cut(s)	652
PfeI	GAWTC	4 cut(s)	320, 400, 827, 860
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PsiI	TTATAA	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	403, 523
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	2 cut(s)	403, 523
PspN4I	GGNNCC	2 cut(s)	87, 725
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	2 cut(s)	224, 449
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	477, 567
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	5 cut(s)	337, 557, 649, 659, 751
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	405, 525
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	2 cut(s)	81, 298
SfcI	CTRYAG	1 cut(s)	489
SphI	GCATGC	1 cut(s)	551
SsiI	CCGC	1 cut(s)	510
SspI	AATATT	1 cut(s)	762
SspMI	CTAG	4 cut(s)	9, 128, 390, 777
StyD4I	CCNGG	2 cut(s)	403, 523
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	5 cut(s)	21, 53, 556, 633, 820
TfiI	GAWTC	4 cut(s)	320, 400, 827, 860
Tru1I	TTAA	2 cut(s)	477, 567
Tru9I	TTAA	2 cut(s)	477, 567
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	6 cut(s)	54, 285, 348, 602, 681, 852
TspGWI	ACGGA	2 cut(s)	161, 831
TspRI	CASTG	1 cut(s)	460
XceI	RCATGY	1 cut(s)	551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	4 cut(s)	9, 128, 390, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.