Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008393

Physical Location & Seq

Genomic Coordinates Reverse (-)

58765520 .. 58770368

Gene Structure 4849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG350800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2382 bp

ATGAACATAGTGGATCCGTCAGTGACTTTACTGGCCGCAAGCGGCGGCGACACCGTGAAGCTCTTCGACGTTTCCGTCAAGTCCGGCGATCCATGCGTCTCCAGCTACATTCCTTCTCCCGGTTGCCACGTCAACTCCGTCAAGTGGAACCACACCAATTTGGTTGTGGTGAGTGCCGGAGATGATAAGAAGATATCGTTGTGGCATAAGAATGGGCAGAGCTTGGGGACTATTCCGGTGGCCGGGACGGACAGTGGTGACAACATTGAGGAGTCTATATCGGCGCTTAGCTTCAGTAACAAGGTTTCAAGATATATATGTTCTGGTGGGAGCGGTCAGGTTGTAAGGATATGGGATTTGCAGAGAAAGAGATGTATTAAATGGTTGAGGGGCCACTCGAGTACAATTACTGGCGCAGCGTACAATTGCAAAGATGAGCACTTGGCTTCCATCAGCCTTAGTGGGGATCTCATAATCCACAACCTGGCATCTAGTACAAGAACAACCGAATTCAAGGACCCTAATGGACAGGTACTAAGAGTGCTTGATTATTCCCGGATTAGCCGACACCTTTTGGTGACAGCAGGTGATGATGGCTCTGTGCATTTGTGGGACACAACTGGTCGTAGCCCAAAGATTTCTTGGTTGAAGCAGCATTCTGCACCAACTGCTGGTATCAGTTTCTCACCGTCAAATGACAAGATGTTTGCTAGTGTCGGGCTCGATAAAAAGTTGTATACTTACGACTCAGGGTCTAGGAGGCATTCATCTTGCATCTCCTATGAGGCACCTTTTTCTGCATTGGCATTTAGAGATGATGGCTGGGTACTAGCAGCTGGAACAAGTAGTGGTCGTGTTGTATTTTATGATGTCCGTGGTAAACCAGAGCCTTTTACCGTTCTTCGTGCTTATAATAGTTCAGAGGCTGTTACAAGTTTATTCTGGCAAAGGTCAAAACCTGTCATTGTAAATGAAAGCAGTTGTTCTGTTGAGACTGCGCTTTTAGGAGATGCTGTTGAAGATTCAATCCTTATGCCTGATCCACTTCCTTCTGTGACTTCATCAAACCTTTCTCTATCTATGGCAGTATCTAGTTCTCGGAATCCAGGCCGTTCTGGTTTATCTGCTGATACATTTTCAGTTACAGCAACTGGCAGTGGATTAGCGTCAACCACACTTAATGTTTCTACTGCAGAGGATGCACCACATCGCGGGCATTTGTGGCCAGGTGGAACATTGTCAAGATTGCATGCTCCTCGATCTACTTTTAACTTCAAGGATGATATGGAGGTATTTTCCCCTCTTGTGGATGTTCATCCTATCACACCTACACTTGACAAGCTGTGGGATGATCATGACAGATCAAAGAAGGATAGTGTAGATAAGAAGCCTTCATCACTATTATTTCCCTCGTCCGGTAGGAGGTTCCCATTGGCAGAGGATGTGTCAAGTGATCATCCAATATTTGATTGGAAGCCTAGCTCAGCTTCTAAACAGGATGACAGCAAATCTTCGTTTGCTCGATTAGAATCAACTCCTGCTCCGTATTCCAAGAGTGAAGACTCATCCATCACCCCTCCAGAAGCTTGGGGCGGTGAAAGATTATCTGATAAGTATACCAACCTGCTTCAGCCAAACATTATGCCATCTCGCTTTGGGATGTCAGCTCCGACATCAGGATCACTTATATCTGGATTACCAGATACATCCCTATCAACAAGTCAGACAAGTATTAGCTCTACAAGCTTAAACTATGCGAATATGCGCATTAAAGATGTCTCTTTCAATCATGAGAATTCCTTCGGATTTCCAGAACACGTTAACTCTAGTGCCATGCCTATGTCCCCTGGCAGCAAAGGAATCATGGGACAGTCTAGCCTTGATTCACCAACATCGTCTTTGACCCTCCATCGGAGATTCTCGACTTATGCAGAGAGGATAGGCACTACATCTTCCTTCAGCGACCGAACATCACTCGCAGTGGGTTCACCAAAAACAAAGAAAACAGGAGCTGAAATGAGAGAATTGTTAACTAGCTTGGTGTCAAAGTCAGATACATCAACTGCCACAGAATCAGGGATTCTTCCAGCAATGAACGGAGGAACCTCACAACTGCAGAAGGTCCCTCAACAAGATGCACAGCCGGGAAATTCCTTTACATTTCAGATTTTTCAACGTACTCTAGAAGAGACTCTTGATTCCTTTCAGAAATCAGTACATGAAGATATGAGGAACCTTCATATAGAAATTTTAAGACAATTCCACATGCAAGAGACGGATATGTCAACGGTAATGAGTAAAATTCTGGCAAACCAATCTGAGCTAATGGAAGAAGTTAAATCTCTGCGGAAAGAAAACCAGCAACTCCGGCAATTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000242 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0005929 GO:0007049 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0009553 GO:0009555 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032506 GO:0032886 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0036064 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044380 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044463 GO:0044464 GO:0045787 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051726 GO:0051781 GO:0060236 GO:0061640 GO:0065007 GO:0070507 GO:0070727 GO:0071539 GO:0071840 GO:0072698 GO:0090068 GO:0090224 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120038 GO:1902410 GO:1903047 GO:1905508 GO:2000694

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

793

Amino Acids

86.15

Weight (kDa)

6.53

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	5 - 157	1e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	8 - 192	3.4e-17	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	12 - 162	6e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	43 - 205	4.6e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	43 - 137	1.5e-09	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	44 - 240	1.5e-17	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	55 - 245	1.5e-09	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	90 - 249	3.4e-16	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	91 - 249	1.6e-18	WDR5 beta-propeller domain
WD40_Prp19	PF24814	91 - 175	4.7e-06	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	94 - 207	3.2e-07	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	100 - 171	6.2e-06	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	103 - 230	2.9e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	106 - 205	8.2e-06	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	132 - 208	6.5e-06	THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	146 - 249	4.7e-06	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	159 - 319	1.2e-08	WDHD1 first WD40 domain
Beta-prop_EIPR1	PF23609	177 - 245	2.9e-06	EIPR1 beta-propeller
Beta-prop_WDR5	PF25175	182 - 294	1.4e-08	WDR5 beta-propeller domain
WD40_Prp19	PF24814	188 - 300	4.6e-12	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	192 - 324	6.8e-12	THOC3 beta-propeller domain
WD40_RFWD3	PF23419	213 - 313	8.5e-06	E3 ubiquitin-protein ligase RFWD3 WD40 domain
Beta-prop_EML_2	PF23414	225 - 295	4.9e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05970 AT5G05970
fragaria_vesca	FvH4_7g23510 FvH4_7g23510 FvH4_7g23510
malus_domestica	MD01G1140700.v1.1 MD07G1205000.v1.1
prunus_persica	Prupe.2G241200_v2.0.a1 Prupe.2G241200_v2.0.a1
pyrus_communis	pycom01g16130 pycom07g19150
rosa_chinensis	RchiOBHm_Chr1g0368661 RchiOBHm_Chr4g0410231
rosa_laevigata	RLG00000027199
rosa_multiflora	Rmu_co8334599.1_g000001 Rmu_sc0001791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00288380
rosa_rugosa	Rorug01G0343400
rosa_samantha	Rh1AG350800 Rh1BG314500 Rh1CG329200 Rh1DG346100
rosa_wichuraiana	Rw0G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AarI	CACCTGC	1 cut(s)	575
AasI	GACNNNNNNGTC	2 cut(s)	74, 2281
Acc16I	TGCGCA	1 cut(s)	1766
Acc36I	ACCTGC	2 cut(s)	575, 1632
AccB1I	GGYRCC	1 cut(s)	787
AccB7I	CCANNNNNTGG	2 cut(s)	484, 671
AccBSI	CCGCTC	1 cut(s)	333
AccI	GTMKAC	2 cut(s)	737, 1616
AccII	CGCG	1 cut(s)	1212
AciI	CCGC	7 cut(s)	36, 42, 45, 333, 1212, 1593, 2347
AclWI	GGATC	6 cut(s)	8, 21, 83, 474, 1034, 1687
AcoI	YGGCCR	3 cut(s)	33, 240, 1223
AcsI	RAATTY	5 cut(s)	509, 1795, 2149, 2247, 2301
AcuI	CTGAAG	3 cut(s)	277, 1613, 1942
AfaI	GTAC	7 cut(s)	403, 422, 496, 534, 828, 2179, 2217
AflIII	ACRYGT	1 cut(s)	1816
AgsI	TTSAA	8 cut(s)	309, 514, 649, 1019, 1026, 1276, 1786, 2174
AhdI	GACNNNNNGTC	1 cut(s)	751
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	4 cut(s)	483, 1105, 1225, 1846
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	5 cut(s)	103, 986, 1783, 2183, 2267
AlwI	GGATC	6 cut(s)	8, 21, 83, 474, 1034, 1687
AlwNI	CAGNNNCTG	3 cut(s)	926, 1151, 2012
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	5 cut(s)	33, 240, 391, 1108, 1223
ApeKI	GCWGC	4 cut(s)	416, 652, 833, 1851
ApoI	RAATTY	5 cut(s)	509, 1795, 2149, 2247, 2301
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
Asp700I	GAANNNNTTC	2 cut(s)	62, 1799
AspLEI	GCGC	4 cut(s)	286, 416, 1000, 1767
AspS9I	GGNCC	3 cut(s)	391, 517, 2122
AsuC2I	CCSGG	4 cut(s)	120, 244, 556, 2145
AsuHPI	GGTGA	9 cut(s)	181, 269, 589, 599, 678, 1564, 1607, 1878, 1980
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	2 cut(s)	517, 2122
BalI	TGGCCA	1 cut(s)	1225
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	1566
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	4 cut(s)	428, 664, 845, 1863
BccI	CCATC	6 cut(s)	458, 587, 812, 1577, 1654, 1917
BceAI	ACGGC	1 cut(s)	1095
BcgI	CGANNNNNNTGC	2 cut(s)	1238, 1272
BciT130I	CCWGG	4 cut(s)	485, 1107, 1227, 1848
BclI	TGATCA	2 cut(s)	1351, 1453
BcnI	CCSGG	4 cut(s)	120, 244, 556, 2145
BcoDI	GTCTC	5 cut(s)	103, 986, 1783, 2183, 2267
BfmI	CTRYAG	2 cut(s)	1191, 2114
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	2 cut(s)	575, 1632
BisI	GCNGC	7 cut(s)	36, 43, 46, 417, 653, 834, 1852
BlpI	GCTNAGC	2 cut(s)	287, 1483
BlsI	GCNGC	7 cut(s)	37, 44, 47, 418, 654, 835, 1853
Bme1390I	CCNGG	8 cut(s)	120, 244, 485, 556, 1107, 1227, 1848, 2145
Bme18I	GGWCC	2 cut(s)	517, 2122
BmeRI	GACNNNNNGTC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	391, 517, 2122
BmiI	GGNNCC	9 cut(s)	15, 149, 392, 519, 789, 1427, 2104, 2124, 2234
BmrFI	CCNGG	8 cut(s)	120, 244, 485, 556, 1107, 1227, 1848, 2145
BmsI	GCATC	5 cut(s)	497, 783, 1000, 1189, 2125
BpiI	GAAGAC	1 cut(s)	1566
BpmI	CTGGAG	2 cut(s)	85, 1563
Bpu1102I	GCTNAGC	2 cut(s)	287, 1483
BpuMI	CCSGG	4 cut(s)	120, 244, 556, 2145
BsaBI	GATNNNNATC	2 cut(s)	1314, 1528
BsaJI	CCNNGG	2 cut(s)	874, 1846
BsaWI	WCCGGW	2 cut(s)	235, 1415
BsaXI	ACNNNNNCTCC	6 cut(s)	119, 149, 999, 1029, 1525, 1555
Bse1I	ACTGG	4 cut(s)	36, 415, 625, 1156
Bse3DI	GCAATG	1 cut(s)	2097
Bse8I	GATNNNNATC	2 cut(s)	1314, 1528
BseBI	CCWGG	4 cut(s)	485, 1107, 1227, 1848
BseDI	CCNNGG	2 cut(s)	874, 1846
BseJI	GATNNNNATC	2 cut(s)	1314, 1528
BseMI	GCAATG	1 cut(s)	2097
BseMII	CTCAG	3 cut(s)	762, 1497, 2310
BseNI	ACTGG	4 cut(s)	36, 415, 625, 1156
BseRI	GAGGAG	2 cut(s)	284, 1245
BseXI	GCAGC	4 cut(s)	428, 664, 845, 1863
BseYI	CCCAGC	1 cut(s)	822
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	1212
Bsh1285I	CGRYCG	1 cut(s)	1966
BshFI	GGCC	5 cut(s)	35, 242, 393, 1110, 1225
BshNI	GGYRCC	1 cut(s)	787
BsiEI	CGRYCG	1 cut(s)	1966
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	9 cut(s)	84, 120, 177, 236, 243, 556, 1416, 2144, 2368
BslFI	GGGAC	6 cut(s)	241, 259, 626, 1828, 1881, 2108
BsmAI	GTCTC	5 cut(s)	103, 986, 1783, 2183, 2267
BsmBI	CGTCTC	2 cut(s)	103, 2267
BsmFI	GGGAC	6 cut(s)	241, 259, 626, 1828, 1881, 2108
BsmI	GAATGC	2 cut(s)	655, 763
BsnI	GGCC	5 cut(s)	35, 242, 393, 1110, 1225
BsoBI	CYCGRG	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	441, 723
Bsp143I	GATC	9 cut(s)	13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
Bsp1720I	GCTNAGC	2 cut(s)	287, 1483
BspACI	CCGC	7 cut(s)	36, 42, 45, 333, 1212, 1593, 2347
BspANI	GGCC	5 cut(s)	35, 242, 393, 1110, 1225
BspCNI	CTCAG	3 cut(s)	761, 1496, 2311
BspFNI	CGCG	1 cut(s)	1212
BspHI	TCATGA	2 cut(s)	1354, 1789
BspLI	GGNNCC	9 cut(s)	15, 149, 392, 519, 789, 1427, 2104, 2124, 2234
BspMAI	CTGCAG	2 cut(s)	1195, 2118
BspMI	ACCTGC	2 cut(s)	575, 1632
BspPI	GGATC	6 cut(s)	8, 21, 83, 474, 1034, 1687
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	787
BsrBI	CCGCTC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	2097
BsrI	ACTGG	4 cut(s)	36, 415, 625, 1156
BssECI	CCNNGG	2 cut(s)	874, 1846
BssMI	GATC	9 cut(s)	13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
BssNAI	GTATAC	2 cut(s)	738, 1617
Bst1107I	GTATAC	2 cut(s)	738, 1617
Bst2UI	CCWGG	4 cut(s)	485, 1107, 1227, 1848
Bst4CI	ACNGT	6 cut(s)	55, 254, 690, 898, 1872, 2290
Bst6I	CTCTTC	2 cut(s)	68, 2181
BstAPI	GCANNNNNTGC	2 cut(s)	668, 1199
BstC8I	GCNNGC	3 cut(s)	40, 1214, 1251
BstDEI	CTNAG	6 cut(s)	287, 458, 536, 748, 1483, 2319
BstDSI	CCRYGG	1 cut(s)	874
BstFNI	CGCG	1 cut(s)	1212
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	4 cut(s)	286, 416, 1000, 1767
BstKTI	GATC	9 cut(s)	16, 91, 469, 1042, 1262, 1354, 1364, 1456, 1682
BstMAI	GTCTC	5 cut(s)	103, 986, 1783, 2183, 2267
BstMBI	GATC	9 cut(s)	13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
BstMCI	CGRYCG	1 cut(s)	1966
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 102, 668, 1199, 1222, 1743, 2368
BstNI	CCWGG	4 cut(s)	485, 1107, 1227, 1848
BstNSI	RCATGY	2 cut(s)	1253, 2269
BstSCI	CCNGG	8 cut(s)	118, 242, 483, 554, 1105, 1225, 1846, 2143
BstSFI	CTRYAG	2 cut(s)	1191, 2114
BstUI	CGCG	1 cut(s)	1212
BstV1I	GCAGC	4 cut(s)	428, 664, 845, 1863
BstV2I	GAAGAC	1 cut(s)	1566
BstX2I	RGATCY	2 cut(s)	13, 466
BstXI	CCANNNNNNTGG	1 cut(s)	1587
BstYI	RGATCY	2 cut(s)	13, 466
BstZ17I	GTATAC	2 cut(s)	738, 1617
BsuRI	GGCC	5 cut(s)	35, 242, 393, 1110, 1225
BtgI	CCRYGG	1 cut(s)	874
BtgZI	GCGATG	1 cut(s)	1193
BtrI	CACGTC	1 cut(s)	130
BtsI	GCAGTG	2 cut(s)	1162, 1986
BtsIMutI	CAGTG	4 cut(s)	27, 259, 1162, 1986
BveI	ACCTGC	2 cut(s)	575, 1632
Cac8I	GCNNGC	3 cut(s)	40, 1214, 1251
CaiI	CAGNNNCTG	3 cut(s)	926, 1151, 2012
CciI	TCATGA	2 cut(s)	1354, 1789
CfoI	GCGC	4 cut(s)	286, 416, 1000, 1767
Cfr13I	GGNCC	3 cut(s)	391, 517, 2122
CseI	GACGC	2 cut(s)	85, 1155
Csp6I	GTAC	7 cut(s)	402, 421, 495, 533, 827, 2178, 2216
CviAII	CATG	8 cut(s)	93, 1250, 1355, 1790, 1834, 1864, 2219, 2266
CviQI	GTAC	7 cut(s)	402, 421, 495, 533, 827, 2178, 2216
DdeI	CTNAG	6 cut(s)	287, 458, 536, 748, 1483, 2319
DpnI	GATC	9 cut(s)	15, 90, 468, 1041, 1261, 1353, 1363, 1455, 1681
DpnII	GATC	9 cut(s)	13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
DrdI	GACNNNNNNGTC	2 cut(s)	74, 2281
DriI	GACNNNNNGTC	1 cut(s)	751
DseDI	GACNNNNNNGTC	2 cut(s)	74, 2281
EaeI	YGGCCR	3 cut(s)	33, 240, 1223
Eam1104I	CTCTTC	2 cut(s)	68, 2181
Eam1105I	GACNNNNNGTC	1 cut(s)	751
EarI	CTCTTC	2 cut(s)	68, 2181
Eco24I	GRGCYC	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	517, 2122
Eco57I	CTGAAG	3 cut(s)	277, 1613, 1942
Eco88I	CYCGRG	1 cut(s)	397
EcoO109I	RGGNCCY	2 cut(s)	517, 2122
EcoRI	GAATTC	2 cut(s)	509, 1795
EcoRII	CCWGG	4 cut(s)	483, 1105, 1225, 1846
EcoRV	GATATC	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	723
Esp3I	CGTCTC	2 cut(s)	103, 2267
FaeI	CATG	8 cut(s)	96, 1253, 1358, 1793, 1837, 1867, 2222, 2269
FalI	AAGNNNNNCTT	2 cut(s)	2178, 2210
FaqI	GGGAC	6 cut(s)	241, 259, 626, 1828, 1881, 2108
FatI	CATG	8 cut(s)	92, 1249, 1354, 1789, 1833, 1863, 2218, 2265
FauI	CCCGC	1 cut(s)	1205
FbaI	TGATCA	2 cut(s)	1351, 1453
FblI	GTMKAC	2 cut(s)	737, 1616
Fnu4HI	GCNGC	7 cut(s)	36, 43, 46, 417, 653, 834, 1852
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	7 cut(s)	36, 43, 46, 417, 653, 834, 1852
FspAI	RTGCGCAY	1 cut(s)	1766
FspI	TGCGCA	1 cut(s)	1766
GlaI	GCGC	4 cut(s)	285, 415, 999, 1766
GluI	GCNGC	7 cut(s)	36, 43, 46, 417, 653, 834, 1852
GsaI	CCCAGC	1 cut(s)	826
GsuI	CTGGAG	2 cut(s)	85, 1563
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	5 cut(s)	35, 242, 393, 1110, 1225
HapII	CCGG	9 cut(s)	84, 120, 177, 236, 243, 556, 1416, 2144, 2368
HgaI	GACGC	2 cut(s)	85, 1155
HhaI	GCGC	4 cut(s)	286, 416, 1000, 1767
Hin1II	CATG	8 cut(s)	96, 1253, 1358, 1793, 1837, 1867, 2222, 2269
Hin6I	GCGC	4 cut(s)	284, 414, 998, 1765
HinP1I	GCGC	4 cut(s)	284, 414, 998, 1765
HincII	GTYRAC	5 cut(s)	133, 1170, 1822, 2031, 2286
HindII	GTYRAC	5 cut(s)	133, 1170, 1822, 2031, 2286
HindIII	AAGCTT	2 cut(s)	1584, 1744
HpaI	GTTAAC	2 cut(s)	1822, 2031
HpaII	CCGG	9 cut(s)	84, 120, 177, 236, 243, 556, 1416, 2144, 2368
HphI	GGTGA	9 cut(s)	181, 269, 589, 599, 678, 1564, 1607, 1878, 1980
Hpy166II	GTNNAC	9 cut(s)	133, 738, 881, 1170, 1617, 1822, 1988, 2031, 2286
Hpy8I	GTNNAC	9 cut(s)	133, 738, 881, 1170, 1617, 1822, 1988, 2031, 2286
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	8 cut(s)	123, 1059, 1363, 1401, 1810, 1966, 2113, 2246
HpyCH4III	ACNGT	6 cut(s)	55, 254, 690, 898, 1872, 2290
HpyCH4IV	ACGT	4 cut(s)	69, 129, 1818, 2176
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 102, 668, 1199, 1222, 1743, 2368
HpyF3I	CTNAG	6 cut(s)	287, 458, 536, 748, 1483, 2319
HpySE526I	ACGT	4 cut(s)	69, 129, 1818, 2176
Hsp92II	CATG	8 cut(s)	96, 1253, 1358, 1793, 1837, 1867, 2222, 2269
HspAI	GCGC	4 cut(s)	284, 414, 998, 1765
Ksp22I	TGATCA	2 cut(s)	1351, 1453
KspAI	GTTAAC	2 cut(s)	1822, 2031
Kzo9I	GATC	9 cut(s)	13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	5 cut(s)	330, 1258, 1546, 1672, 2009
Lsp1109I	GCAGC	4 cut(s)	428, 664, 845, 1863
LweI	GCATC	5 cut(s)	497, 783, 1000, 1189, 2125
MaeII	ACGT	4 cut(s)	69, 129, 1818, 2176
MaeIII	GTNAC	7 cut(s)	22, 257, 296, 577, 928, 1054, 1141
MalI	GATC	9 cut(s)	15, 90, 468, 1041, 1261, 1353, 1363, 1455, 1681
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	9 cut(s)	13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
MfeI	CAATTG	2 cut(s)	424, 2372
MflI	RGATCY	2 cut(s)	13, 466
MhlI	GDGCHC	2 cut(s)	441, 723
MlsI	TGGCCA	1 cut(s)	1225
MluNI	TGGCCA	1 cut(s)	1225
MlyI	GAGTC	4 cut(s)	281, 740, 1556, 2185
MmeI	TCCRAC	1 cut(s)	1694
Mox20I	TGGCCA	1 cut(s)	1225
MroXI	GAANNNNTTC	2 cut(s)	62, 1799
MscI	TGGCCA	1 cut(s)	1225
MseI	TTAA	9 cut(s)	378, 1179, 1269, 1748, 1770, 1821, 2030, 2252, 2337
MslI	CAYNNNNRTG	2 cut(s)	210, 1838
Msp20I	TGGCCA	1 cut(s)	1225
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	9 cut(s)	84, 120, 177, 236, 243, 556, 1416, 2144, 2368
MspR9I	CCNGG	8 cut(s)	120, 244, 485, 556, 1107, 1227, 1848, 2145
MunI	CAATTG	2 cut(s)	424, 2372
Mva1269I	GAATGC	2 cut(s)	655, 763
MvaI	CCWGG	4 cut(s)	485, 1107, 1227, 1848
MvnI	CGCG	1 cut(s)	1212
MwoI	GCNNNNNNNGC	7 cut(s)	93, 102, 668, 1199, 1222, 1743, 2368
NciI	CCSGG	4 cut(s)	120, 244, 556, 2145
NdeII	GATC	9 cut(s)	13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
NlaIII	CATG	8 cut(s)	96, 1253, 1358, 1793, 1837, 1867, 2222, 2269
NlaIV	GGNNCC	9 cut(s)	15, 149, 392, 519, 789, 1427, 2104, 2124, 2234
NmuCI	GTSAC	4 cut(s)	22, 257, 577, 1054
NsbI	TGCGCA	1 cut(s)	1766
NspI	RCATGY	2 cut(s)	1253, 2269
PaeI	GCATGC	1 cut(s)	1253
PaeR7I	CTCGAG	1 cut(s)	397
PagI	TCATGA	2 cut(s)	1354, 1789
PaqCI	CACCTGC	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 135
PctI	GAATGC	2 cut(s)	655, 763
PdmI	GAANNNNTTC	2 cut(s)	62, 1799
PfeI	GAWTC	9 cut(s)	1022, 1102, 1529, 1860, 1883, 1917, 2072, 2080, 2198
PflMI	CCANNNNNTGG	2 cut(s)	484, 671
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	7 cut(s)	37, 44, 47, 418, 654, 835, 1853
PleI	GAGTC	4 cut(s)	280, 740, 1556, 2185
PpsI	GAGTC	4 cut(s)	280, 740, 1556, 2185
PpuMI	RGGWCCY	2 cut(s)	517, 2122
PsiI	TTATAA	1 cut(s)	912
Psp5II	RGGWCCY	2 cut(s)	517, 2122
Psp6I	CCWGG	4 cut(s)	483, 1105, 1225, 1846
PspFI	CCCAGC	1 cut(s)	822
PspGI	CCWGG	4 cut(s)	483, 1105, 1225, 1846
PspN4I	GGNNCC	9 cut(s)	15, 149, 392, 519, 789, 1427, 2104, 2124, 2234
PspPI	GGNCC	3 cut(s)	391, 517, 2122
PspPPI	RGGWCCY	2 cut(s)	517, 2122
PspXI	VCTCGAGB	1 cut(s)	397
PstI	CTGCAG	2 cut(s)	1195, 2118
PstNI	CAGNNNCTG	3 cut(s)	926, 1151, 2012
PsuI	RGATCY	2 cut(s)	13, 466
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	7 cut(s)	403, 422, 496, 534, 828, 2179, 2217
RsaNI	GTAC	7 cut(s)	402, 421, 495, 533, 827, 2178, 2216
RseI	CAYNNNNRTG	2 cut(s)	210, 1838
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	9 cut(s)	378, 1179, 1269, 1748, 1770, 1821, 2030, 2252, 2337
SatI	GCNGC	7 cut(s)	36, 43, 46, 417, 653, 834, 1852
Sau3AI	GATC	9 cut(s)	13, 88, 466, 1039, 1259, 1351, 1361, 1453, 1679
Sau96I	GGNCC	3 cut(s)	391, 517, 2122
SchI	GAGTC	4 cut(s)	281, 740, 1556, 2185
ScrFI	CCNGG	8 cut(s)	120, 244, 485, 556, 1107, 1227, 1848, 2145
SduI	GDGCHC	2 cut(s)	441, 723
SfaNI	GCATC	5 cut(s)	497, 783, 1000, 1189, 2125
SfcI	CTRYAG	2 cut(s)	1191, 2114
Sfr274I	CTCGAG	1 cut(s)	397
SinI	GGWCC	2 cut(s)	517, 2122
SlaI	CTCGAG	1 cut(s)	397
SmiMI	CAYNNNNRTG	2 cut(s)	210, 1838
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SphI	GCATGC	1 cut(s)	1253
SsiI	CCGC	7 cut(s)	36, 42, 45, 333, 1212, 1593, 2347
SspI	AATATT	1 cut(s)	1464
StyD4I	CCNGG	8 cut(s)	118, 242, 483, 554, 1105, 1225, 1846, 2143
TaaI	ACNGT	6 cut(s)	55, 254, 690, 898, 1872, 2290
TaiI	ACGT	4 cut(s)	72, 132, 1821, 2179
TaqI	TCGA	6 cut(s)	66, 398, 723, 1258, 1522, 1922
TaqII	GACCGA	1 cut(s)	1980
TatI	WGTACW	3 cut(s)	401, 494, 2215
TauI	GCSGC	3 cut(s)	38, 45, 48
TfiI	GAWTC	9 cut(s)	1022, 1102, 1529, 1860, 1883, 1917, 2072, 2080, 2198
Tru1I	TTAA	9 cut(s)	378, 1179, 1269, 1748, 1770, 1821, 2030, 2252, 2337
Tru9I	TTAA	9 cut(s)	378, 1179, 1269, 1748, 1770, 1821, 2030, 2252, 2337
TscAI	CASTG	4 cut(s)	27, 259, 1162, 1986
TseFI	GTSAC	4 cut(s)	22, 257, 577, 1054
TseI	GCWGC	4 cut(s)	416, 652, 833, 1851
Tsp45I	GTSAC	4 cut(s)	22, 257, 577, 1054
TspDTI	ATGAA	9 cut(s)	17, 756, 987, 1050, 1304, 1383, 2108, 2228, 2235
TspGWI	ACGGA	8 cut(s)	6, 64, 127, 263, 863, 1533, 2112, 2291
TspRI	CASTG	4 cut(s)	27, 259, 1162, 1986
Van91I	CCANNNNNTGG	2 cut(s)	484, 671
VpaK11BI	GGWCC	2 cut(s)	517, 2122
XapI	RAATTY	5 cut(s)	509, 1795, 2149, 2247, 2301
XbaI	TCTAGA	1 cut(s)	2182
XceI	RCATGY	2 cut(s)	1253, 2269
XcmI	CCANNNNNNNNNTGG	3 cut(s)	163, 639, 1467
XhoI	CTCGAG	1 cut(s)	397
XmiI	GTMKAC	2 cut(s)	737, 1616
XmnI	GAANNNNTTC	2 cut(s)	62, 1799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.