Rroxscaffold_4G00288380

WD40 repeats

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
9222640 .. 9227615
4976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288380.1

Sequence Viewer

Length: 1410 bp
ATGTTTGCTAGCGTCGGGCTCGATAAAAAGTTGTATACGTACGACTCAGGGTCTAGGAGACATTCATCTTGCATCTCCTATGAGGCACCTTTTTCTGCATTGGCATTTAGAGATGATGGCTGGGTACTAGCAGCTGGAACAAGTAGTGGTCGTGTTGTATTTTATGATGTCCGTGGTAAACCAGAGCCTTTTACTGTTCTTCGTGCTTATAATAGTTCAGAGGCTGTTACAAGTTTATGCTGGCAAAGGTCAAAACCTGTCATTGTAAATGAAAGCAGTTGTTCTGTTGAGACTGCGCTTTTAGGAGATGCTGTTGAAGATTCAATCCTTATGCCTGATCCACTTCCTTCTGTGACTTCATCAAACCTTTCTCTATCTACGGCGGTATCTAGTTCTCGGAATCCAGGCCGTTCTGGTTTATCTGCTGATACATTTTCAGTTACAGCAACTGGCAGTGGATTAGCGTCAACCACACTTAATGTTTCTACTGCAGAGGATACACCACATCGCGGGCATTTGTGGCCAGGTGGAACATTGTCAAGATTGCATGCTCCTCGATCTACTTTTAACTTCAAGGATGATATGGAGGTATTTTCCCCTCTTGTGGATGTTCATCCTATCACACCTACACTTGACAAGCTGTGGGATGATCATGACAGATCAAAGAAGGATAGTGTAGATAAGAAGCCTTCATCACTATTATTTCCCTCGTCCAGTAGGAGGTTCCCATTGGCAGAGGATGTGTCAAGTGATCATCCAATATTTGATTGGAAGCCTAGCTCAGCTTCTAAACAGGATGACAGCAAATCTTCGTTTGCTCGATTAGAATCAACTCCTGCTCCGTATTCCAAGAGTGAAGACTCATCCATCACCCCTCCAGAAGCTTGGGGCGGTGAAAGATTATCTGATAAGTATACCAACCTGCTTCAGCCAAACATTATGCCATCTCGCTTTGGGATGTCAGCTCAGACATCAGGATCACTTATATCTGGATTACCAGATACATCCTTATCAACAAGTCAGACAAGTATTAGCTCTACAGGCTTAAACTATGCGAATATGCGCATTAAAGATGTCTCTTTCAATCACGAGAATTCCTTGGGATTTCCAGAACACGTTAACTCTAGTGCCATGCCTATGTCCCCTGGTAGCAAAGGAATCATGGGACAGTCTAGCCTTGATTCACCAACATCGTCTTTGACCCTCCATCGGAGATTCTCTACTTATGCAGAGAGGATAGGCACTACATCTTCCTTCAGTGACCGAACATCACTCGCAGTGGGTTCACCAAAAACAAAGAAAACAGGAGCTGAAATGAGAGAATTGTTAACTAGCTTGGTGTCAAAGTCAGATACATCAACTGCCACAGAATCAGGGATTCTTCCAGCAATGAACGTAAGATGTCTTTGA

Protein Analysis

469

Amino Acids

50.44

Weight (kDa)

6.22

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 4 - 85 6.9e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
Acc16I TGCGCA 1 cut(s) 1064
Acc36I ACCTGC 1 cut(s) 930
AccB1I GGYRCC 1 cut(s) 85
AccI GTMKAC 2 cut(s) 35, 914
AccII CGCG 1 cut(s) 510
AciI CCGC 3 cut(s) 383, 510, 891
AclWI GGATC 2 cut(s) 332, 985
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 1 cut(s) 1093
AcuI CTGAAG 2 cut(s) 911, 1240
AfaI GTAC 2 cut(s) 41, 126
AfiI CCNNNNNNNGG 4 cut(s) 509, 604, 720, 1209
AflIII ACRYGT 1 cut(s) 1114
AgsI TTSAA 4 cut(s) 317, 324, 574, 1084
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 3 cut(s) 403, 523, 1144
AluBI AGCT 9 cut(s) 134, 640, 780, 785, 884, 965, 1035, 1310, 1335
AluI AGCT 9 cut(s) 134, 640, 780, 785, 884, 965, 1035, 1310, 1335
Alw26I GTCTC 3 cut(s) 52, 284, 1081
AlwI GGATC 2 cut(s) 332, 985
AlwNI CAGNNNCTG 3 cut(s) 224, 449, 1310
AoxI GGCC 2 cut(s) 406, 521
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 1093
AspLEI GCGC 2 cut(s) 298, 1065
AsuHPI GGTGA 4 cut(s) 862, 905, 1176, 1278
AsuNHI GCTAGC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BalI TGGCCA 1 cut(s) 523
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 1088
BbsI GAAGAC 1 cut(s) 864
BbvI GCAGC 1 cut(s) 143
BccI CCATC 4 cut(s) 110, 875, 952, 1215
BceAI ACGGC 2 cut(s) 393, 396
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 3 cut(s) 405, 525, 1146
BciVI GTATCC 1 cut(s) 490
BclI TGATCA 2 cut(s) 649, 751
BcoDI GTCTC 3 cut(s) 52, 284, 1081
BfaI CTAG 8 cut(s) 9, 54, 128, 390, 777, 1125, 1173, 1332
BfmI CTRYAG 2 cut(s) 489, 1038
BfuAI ACCTGC 1 cut(s) 930
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 1 cut(s) 132
BlpI GCTNAGC 1 cut(s) 781
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 3 cut(s) 405, 525, 1146
BmeRI GACNNNNNGTC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 87, 725
BmrFI CCNGG 3 cut(s) 405, 525, 1146
BmsI GCATC 2 cut(s) 81, 298
BmtI GCTAGC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 864
BpmI CTGGAG 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 781
BsaAI YACGTR 1 cut(s) 39
BsaBI GATNNNNATC 2 cut(s) 612, 826
BsaJI CCNNGG 3 cut(s) 172, 1098, 1144
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 823, 853
Bsc4I CCNNNNNNNGG 4 cut(s) 509, 604, 720, 1209
Bse1I ACTGG 2 cut(s) 454, 714
Bse3DI GCAATG 1 cut(s) 1395
Bse8I GATNNNNATC 2 cut(s) 612, 826
BseBI CCWGG 3 cut(s) 405, 525, 1146
BseDI CCNNGG 3 cut(s) 172, 1098, 1144
BseJI GATNNNNATC 2 cut(s) 612, 826
BseLI CCNNNNNNNGG 4 cut(s) 509, 604, 720, 1209
BseMI GCAATG 1 cut(s) 1395
BseMII CTCAG 3 cut(s) 60, 795, 980
BseNI ACTGG 2 cut(s) 454, 714
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 408, 523
BshNI GGYRCC 1 cut(s) 85
BsiWI CGTACG 1 cut(s) 39
BslFI GGGAC 2 cut(s) 1126, 1179
BslI CCNNNNNNNGG 4 cut(s) 509, 604, 720, 1209
BsmAI GTCTC 3 cut(s) 52, 284, 1081
BsmFI GGGAC 2 cut(s) 1126, 1179
BsnI GGCC 2 cut(s) 408, 523
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 6 cut(s) 337, 557, 649, 659, 751, 977
Bsp1720I GCTNAGC 1 cut(s) 781
BspACI CCGC 3 cut(s) 383, 510, 891
BspANI GGCC 2 cut(s) 408, 523
BspCNI CTCAG 3 cut(s) 59, 794, 979
BspFNI CGCG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 87, 725
BspMAI CTGCAG 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 930
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 2 cut(s) 332, 985
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 1395
BsrI ACTGG 2 cut(s) 454, 714
BssECI CCNNGG 3 cut(s) 172, 1098, 1144
BssMI GATC 6 cut(s) 337, 557, 649, 659, 751, 977
BssNAI GTATAC 2 cut(s) 36, 915
BssSI CACGAG 1 cut(s) 1088
BssT1I CCWWGG 1 cut(s) 1098
Bst1107I GTATAC 2 cut(s) 36, 915
Bst2BI CACGAG 1 cut(s) 1088
Bst2UI CCWGG 3 cut(s) 405, 525, 1146
Bst4CI ACNGT 2 cut(s) 196, 1170
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 4 cut(s) 10, 242, 512, 549
BstDEI CTNAG 3 cut(s) 46, 781, 966
BstDSI CCRYGG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 2 cut(s) 298, 1065
BstKTI GATC 6 cut(s) 340, 560, 652, 662, 754, 980
BstMAI GTCTC 3 cut(s) 52, 284, 1081
BstMBI GATC 6 cut(s) 337, 557, 649, 659, 751, 977
BstMWI GCNNNNNNNGC 2 cut(s) 520, 1041
BstNI CCWGG 3 cut(s) 405, 525, 1146
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 3 cut(s) 403, 523, 1144
BstSFI CTRYAG 2 cut(s) 489, 1038
BstSNI TACGTA 1 cut(s) 39
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 864
BstXI CCANNNNNNTGG 1 cut(s) 885
BstZ17I GTATAC 2 cut(s) 36, 915
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 2 cut(s) 408, 523
BtgI CCRYGG 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 491
BtsI GCAGTG 2 cut(s) 460, 1284
BtsIMutI CAGTG 3 cut(s) 460, 1264, 1284
BveI ACCTGC 1 cut(s) 930
Cac8I GCNNGC 4 cut(s) 10, 242, 512, 549
CaiI CAGNNNCTG 3 cut(s) 224, 449, 1310
CciI TCATGA 1 cut(s) 652
CfoI GCGC 2 cut(s) 298, 1065
CseI GACGC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 40, 125
CviAII CATG 4 cut(s) 548, 653, 1132, 1162
CviQI GTAC 2 cut(s) 40, 125
DdeI CTNAG 3 cut(s) 46, 781, 966
DpnI GATC 6 cut(s) 339, 559, 651, 661, 753, 979
DpnII GATC 6 cut(s) 337, 557, 649, 659, 751, 977
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 521
Eam1105I GACNNNNNGTC 1 cut(s) 49
Eco105I TACGTA 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 1098
Eco24I GRGCYC 1 cut(s) 21
Eco57I CTGAAG 2 cut(s) 911, 1240
EcoRI GAATTC 1 cut(s) 1093
EcoRII CCWGG 3 cut(s) 403, 523, 1144
EcoT14I CCWWGG 1 cut(s) 1098
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 1098
FaeI CATG 4 cut(s) 551, 656, 1135, 1165
FaqI GGGAC 2 cut(s) 1126, 1179
FatI CATG 4 cut(s) 547, 652, 1131, 1161
FauI CCCGC 1 cut(s) 503
FbaI TGATCA 2 cut(s) 649, 751
FblI GTMKAC 2 cut(s) 35, 914
Fnu4HI GCNGC 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 132
FspAI RTGCGCAY 1 cut(s) 1064
FspBI CTAG 8 cut(s) 9, 54, 128, 390, 777, 1125, 1173, 1332
FspI TGCGCA 1 cut(s) 1064
GlaI GCGC 2 cut(s) 297, 1064
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 861
HaeIII GGCC 2 cut(s) 408, 523
HgaI GACGC 1 cut(s) 453
HhaI GCGC 2 cut(s) 298, 1065
Hin1II CATG 4 cut(s) 551, 656, 1135, 1165
Hin6I GCGC 2 cut(s) 296, 1063
HinP1I GCGC 2 cut(s) 296, 1063
HincII GTYRAC 3 cut(s) 468, 1120, 1329
HindII GTYRAC 3 cut(s) 468, 1120, 1329
HindIII AAGCTT 1 cut(s) 882
HpaI GTTAAC 2 cut(s) 1120, 1329
HphI GGTGA 4 cut(s) 862, 905, 1176, 1278
Hpy166II GTNNAC 7 cut(s) 36, 179, 468, 915, 1120, 1286, 1329
Hpy188I TCNGA 7 cut(s) 220, 399, 907, 969, 1023, 1212, 1351
Hpy188III TCNNGA 7 cut(s) 540, 653, 878, 975, 990, 1088, 1109
Hpy8I GTNNAC 7 cut(s) 36, 179, 468, 915, 1120, 1286, 1329
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 357, 661, 699, 1264
HpyCH4III ACNGT 2 cut(s) 196, 1170
HpyCH4IV ACGT 3 cut(s) 38, 1116, 1395
HpyCH4V TGCA 5 cut(s) 72, 98, 491, 547, 1229
HpyF10VI GCNNNNNNNGC 2 cut(s) 520, 1041
HpyF3I CTNAG 3 cut(s) 46, 781, 966
HpySE526I ACGT 3 cut(s) 38, 1116, 1395
Hsp92II CATG 4 cut(s) 551, 656, 1135, 1165
HspAI GCGC 2 cut(s) 296, 1063
Ksp22I TGATCA 2 cut(s) 649, 751
KspAI GTTAAC 2 cut(s) 1120, 1329
Kzo9I GATC 6 cut(s) 337, 557, 649, 659, 751, 977
LmnI GCTCC 3 cut(s) 556, 844, 1307
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 2 cut(s) 81, 298
MaeI CTAG 8 cut(s) 9, 54, 128, 390, 777, 1125, 1173, 1332
MaeII ACGT 3 cut(s) 38, 1116, 1395
MaeIII GTNAC 4 cut(s) 226, 352, 439, 1259
MalI GATC 6 cut(s) 339, 559, 651, 661, 753, 979
MboI GATC 6 cut(s) 337, 557, 649, 659, 751, 977
MboII GAAGA 6 cut(s) 191, 329, 801, 869, 1242, 1373
MhlI GDGCHC 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 2 cut(s) 1093, 1322
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 2 cut(s) 38, 854
Mox20I TGGCCA 1 cut(s) 523
MscI TGGCCA 1 cut(s) 523
MseI TTAA 6 cut(s) 477, 567, 1046, 1068, 1119, 1328
MslI CAYNNNNRTG 1 cut(s) 1136
Msp20I TGGCCA 1 cut(s) 523
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 3 cut(s) 405, 525, 1146
MvaI CCWGG 3 cut(s) 405, 525, 1146
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 2 cut(s) 520, 1041
NdeII GATC 6 cut(s) 337, 557, 649, 659, 751, 977
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 4 cut(s) 551, 656, 1135, 1165
NlaIV GGNNCC 2 cut(s) 87, 725
NmuCI GTSAC 2 cut(s) 352, 1259
NsbI TGCGCA 1 cut(s) 1064
NspI RCATGY 1 cut(s) 551
PaeI GCATGC 1 cut(s) 551
PagI TCATGA 1 cut(s) 652
PfeI GAWTC 8 cut(s) 320, 400, 827, 1158, 1181, 1215, 1370, 1378
Pfl23II CGTACG 1 cut(s) 39
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 2 cut(s) 38, 854
PpsI GAGTC 2 cut(s) 38, 854
Ppu21I YACGTR 1 cut(s) 39
PsiI TTATAA 1 cut(s) 210
Psp6I CCWGG 3 cut(s) 403, 523, 1144
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 3 cut(s) 403, 523, 1144
PspLI CGTACG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 87, 725
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 3 cut(s) 224, 449, 1310
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 2 cut(s) 41, 126
RsaNI GTAC 2 cut(s) 40, 125
RseI CAYNNNNRTG 1 cut(s) 1136
SaqAI TTAA 6 cut(s) 477, 567, 1046, 1068, 1119, 1328
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 6 cut(s) 337, 557, 649, 659, 751, 977
SchI GAGTC 2 cut(s) 38, 854
ScrFI CCNGG 3 cut(s) 405, 525, 1146
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 2 cut(s) 81, 298
SfcI CTRYAG 2 cut(s) 489, 1038
SmiMI CAYNNNNRTG 1 cut(s) 1136
SnaBI TACGTA 1 cut(s) 39
SphI GCATGC 1 cut(s) 551
Sse9I AATT 2 cut(s) 1093, 1322
SsiI CCGC 3 cut(s) 383, 510, 891
SspI AATATT 1 cut(s) 762
SspMI CTAG 8 cut(s) 9, 54, 128, 390, 777, 1125, 1173, 1332
StyD4I CCNGG 3 cut(s) 403, 523, 1144
StyI CCWWGG 1 cut(s) 1098
TaaI ACNGT 2 cut(s) 196, 1170
TaiI ACGT 3 cut(s) 41, 1119, 1398
TaqI TCGA 3 cut(s) 21, 556, 820
TaqII GACCGA 1 cut(s) 1278
TasI AATT 2 cut(s) 1093, 1322
TfiI GAWTC 8 cut(s) 320, 400, 827, 1158, 1181, 1215, 1370, 1378
Tru1I TTAA 6 cut(s) 477, 567, 1046, 1068, 1119, 1328
Tru9I TTAA 6 cut(s) 477, 567, 1046, 1068, 1119, 1328
TscAI CASTG 3 cut(s) 460, 1264, 1284
TseFI GTSAC 2 cut(s) 352, 1259
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 2 cut(s) 352, 1259
TspDTI ATGAA 6 cut(s) 54, 285, 348, 602, 681, 1406
TspGWI ACGGA 2 cut(s) 161, 831
TspRI CASTG 3 cut(s) 460, 1264, 1284
XapI RAATTY 1 cut(s) 1093
XceI RCATGY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 765
XmiI GTMKAC 2 cut(s) 35, 914
XspI CTAG 8 cut(s) 9, 54, 128, 390, 777, 1125, 1173, 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.