Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338553.1

Orthogroup ID

OG0002635

Physical Location & Seq

Genomic Coordinates Reverse (-)

93 .. 878

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggaggaagacatgaagtccaacacgacagtgatgcttctagagaggctgggagagtgtgctaccgaaagttgggagaagcaactcgcatttcaccagttgggggttgtgatgcttgagaggcaggaatataaagatgctcagtgctggtttgaattagccattgaggcgggtcatgtgtattccatggtgggggttgcaagggccaaattcaagcgtggccacaagtatgtagcgtacaagcagatgaactcgctaatttcggagcatacaccagttgggtggatgtatcaggagcgttctctgtattctaatggaaaggaaaagatgatggatttgaatactgctactcaattggatccaactctatcttatccatacaagtttagggctgtttctctattggaagagaatcagatcggagcagccatcacagagatcaataagattattagtttcaaggtctcccctgattgtcttgaactgcgggcttggttttcaattgccatggaggattgtgaaggagctctgagagatgtcagggcacttctgactttggacccgaattacatgatgtttcatgggaaattgcatggtgaccatcttgtagagctgctccaacctcttgtccagcaatggagtcaggctgattgttggatgcaactatatgatcgatggtcctctgtggatgatattggctctctagctgttgtacatcatatgttggcaaatgaccctgggaagagcctcctacgctttaggcagtctctccttctattacggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_8

Protein Analysis

261

Amino Acids

30.14

Weight (kDa)

5.73

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51770 AT3G51770
fragaria_vesca	FvH4_3g39300 FvH4_3g39300 FvH4_3g39300 FvH4_6g10980 FvH4_6g10980 FvH4_6g10980 FvH4_6g10980
malus_domestica	MD03G1062500.v1.1 MD04G1162900.v1.1 MD11G1066100.v1.1 MD12G1176500.v1.1
prunus_persica	Prupe.6G052500_v2.0.a1 Prupe.6G052500_v2.0.a1 Prupe.6G282400_v2.0.a1
pyrus_communis	pycom03g05010 pycom11g05600 pycom12g16650
rosa_chinensis	RchiOBHm_Chr3g0462291 RchiOBHm_Chr5g0070731
rosa_laevigata	RLG00000024871 RLG00000036154
rosa_multiflora	Rmu_co8338553.1_g000001 Rmu_sc0002944.1_g000041 Rmu_sc0036080.1_g000002
rosa_roxburghii	Rroxscaffold_1G00010460 Rroxscaffold_6G00417610
rosa_rugosa	Rorug03G0055500 Rorug05G0408100 Rorug05G0408200
rosa_samantha	Rh3AG114300 Rh3BG117400 Rh3CG120200 Rh3DG119200 Rh5AG463600 Rh5CG505800 Rh5DG494000
rosa_wichuraiana	Rw3G009650 Rw5G043150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	170, 487
AclWI	GGATC	2 cut(s)	353, 366
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	2 cut(s)	239, 714
AfiI	CCNNNNNNNGG	3 cut(s)	72, 103, 192
AgsI	TTSAA	6 cut(s)	155, 214, 340, 460, 482, 501
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	736
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	3 cut(s)	527, 613, 707
AluI	AGCT	3 cut(s)	527, 613, 707
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	2 cut(s)	469, 771
AlwI	GGATC	2 cut(s)	353, 366
AoxI	GGCC	2 cut(s)	204, 220
ApeKI	GCWGC	2 cut(s)	425, 613
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	204, 559, 678
AsuHPI	GGTGA	2 cut(s)	86, 608
AvaII	GGWCC	2 cut(s)	559, 678
BaeGI	GKGCMC	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	2 cut(s)	437, 600
BccI	CCATC	4 cut(s)	325, 437, 609, 669
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	738
BcoDI	GTCTC	2 cut(s)	469, 771
BfaI	CTAG	2 cut(s)	41, 704
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	426, 614
BlsI	GCNGC	2 cut(s)	427, 615
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	2 cut(s)	559, 678
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgT120I	GGNCC	3 cut(s)	204, 559, 678
BmiI	GGNNCC	2 cut(s)	360, 561
BmrFI	CCNGG	1 cut(s)	738
BmsI	GCATC	4 cut(s)	24, 102, 127, 648
BpiI	GAAGAC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	673
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	4 cut(s)	186, 507, 736, 737
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 103, 192
Bse1I	ACTGG	2 cut(s)	97, 275
Bse3DI	GCAATG	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	738
BseCI	ATCGAT	1 cut(s)	673
BseDI	CCNNGG	4 cut(s)	186, 507, 736, 737
BseGI	GGATG	3 cut(s)	291, 663, 694
BseLI	CCNNNNNNNGG	3 cut(s)	72, 103, 192
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	2 cut(s)	155, 521
BseNI	ACTGG	2 cut(s)	97, 275
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	2 cut(s)	437, 600
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	206, 222
BshVI	ATCGAT	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	72, 103, 192
BsmAI	GTCTC	2 cut(s)	469, 771
BsnI	GGCC	2 cut(s)	206, 222
Bso31I	GGTCTC	1 cut(s)	469
Bsp1286I	GDGCHC	2 cut(s)	529, 547
Bsp1407I	TGTACA	1 cut(s)	712
Bsp143I	GATC	4 cut(s)	358, 417, 438, 670
Bsp19I	CCATGG	2 cut(s)	186, 507
BspACI	CCGC	2 cut(s)	170, 487
BspANI	GGCC	2 cut(s)	206, 222
BspCNI	CTCAG	2 cut(s)	154, 522
BspDI	ATCGAT	1 cut(s)	673
BspLI	GGNNCC	2 cut(s)	360, 561
BspPI	GGATC	2 cut(s)	353, 366
BspQI	GCTCTTC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	641
BsrGI	TGTACA	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	97, 275
BssECI	CCNNGG	4 cut(s)	186, 507, 736, 737
BssMI	GATC	4 cut(s)	358, 417, 438, 670
BssT1I	CCWWGG	2 cut(s)	186, 507
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	2 cut(s)	31, 783
Bst6I	CTCTTC	2 cut(s)	402, 737
BstAUI	TGTACA	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	2 cut(s)	141, 530
BstDSI	CCRYGG	2 cut(s)	186, 507
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	3 cut(s)	291, 663, 694
BstKTI	GATC	4 cut(s)	361, 420, 441, 673
BstMAI	GTCTC	2 cut(s)	469, 771
BstMBI	GATC	4 cut(s)	358, 417, 438, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 167, 753
BstNI	CCWGG	1 cut(s)	738
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	736
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	437, 600
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	206, 222
BsuTUI	ATCGAT	1 cut(s)	673
BtgI	CCRYGG	2 cut(s)	186, 507
BtsCI	GGATG	3 cut(s)	291, 663, 694
BtsIMutI	CAGTG	2 cut(s)	36, 149
Cac8I	GCNNGC	1 cut(s)	489
Cfr13I	GGNCC	3 cut(s)	204, 559, 678
ClaI	ATCGAT	1 cut(s)	673
Csp6I	GTAC	2 cut(s)	238, 713
CviAII	CATG	7 cut(s)	13, 176, 187, 508, 571, 581, 593
CviQI	GTAC	2 cut(s)	238, 713
DdeI	CTNAG	2 cut(s)	141, 530
DpnI	GATC	4 cut(s)	360, 419, 440, 672
DpnII	GATC	4 cut(s)	358, 417, 438, 670
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	402, 737
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EarI	CTCTTC	2 cut(s)	402, 737
Ecl136II	GAGCTC	1 cut(s)	527
Eco130I	CCWWGG	2 cut(s)	186, 507
Eco24I	GRGCYC	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	469
Eco47I	GGWCC	2 cut(s)	559, 678
Eco53kI	GAGCTC	1 cut(s)	527
Eco91I	GGTNACC	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	527
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	736
EcoT14I	CCWWGG	2 cut(s)	186, 507
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	2 cut(s)	186, 507
FaeI	CATG	7 cut(s)	16, 179, 190, 511, 574, 584, 596
FatI	CATG	7 cut(s)	12, 175, 186, 507, 570, 580, 592
FauI	CCCGC	2 cut(s)	163, 480
FauNDI	CATATG	1 cut(s)	720
Fnu4HI	GCNGC	2 cut(s)	426, 614
FokI	GGATG	3 cut(s)	298, 670, 701
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	2 cut(s)	426, 614
FspBI	CTAG	2 cut(s)	41, 704
GluI	GCNGC	2 cut(s)	426, 614
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	206, 222
Hin1II	CATG	7 cut(s)	16, 179, 190, 511, 574, 584, 596
HinfI	GANTC	2 cut(s)	412, 640
HphI	GGTGA	2 cut(s)	86, 608
Hpy188I	TCNGA	5 cut(s)	265, 417, 422, 531, 552
Hpy188III	TCNNGA	3 cut(s)	41, 293, 479
HpyAV	CCTTC	2 cut(s)	515, 782
HpyCH4III	ACNGT	2 cut(s)	31, 783
HpyCH4V	TGCA	3 cut(s)	200, 592, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 167, 753
HpyF3I	CTNAG	2 cut(s)	141, 530
Hsp92II	CATG	7 cut(s)	16, 179, 190, 511, 574, 584, 596
Kzo9I	GATC	4 cut(s)	358, 417, 438, 670
LguI	GCTCTTC	1 cut(s)	737
LmnI	GCTCC	5 cut(s)	265, 295, 422, 524, 621
Lsp1109I	GCAGC	2 cut(s)	437, 600
LweI	GCATC	4 cut(s)	24, 102, 127, 648
MaeI	CTAG	2 cut(s)	41, 704
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	4 cut(s)	360, 419, 440, 672
MboI	GATC	4 cut(s)	358, 417, 438, 670
MboII	GAAGA	3 cut(s)	20, 419, 754
MfeI	CAATTG	2 cut(s)	353, 501
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	529, 547
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	7 cut(s)	155, 209, 258, 353, 501, 565, 587
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	649
MmeI	TCCRAC	4 cut(s)	45, 386, 635, 643
MnlI	CCTC	7 cut(s)	39, 114, 160, 505, 633, 691, 758
Mox20I	TGGCCA	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	29, 228
Msp20I	TGGCCA	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	738
MunI	CAATTG	2 cut(s)	353, 501
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	3 cut(s)	121, 167, 753
NcoI	CCATGG	2 cut(s)	186, 507
NdeI	CATATG	1 cut(s)	720
NdeII	GATC	4 cut(s)	358, 417, 438, 670
NlaIII	CATG	7 cut(s)	16, 179, 190, 511, 574, 584, 596
NlaIV	GGNNCC	2 cut(s)	360, 561
NmuCI	GTSAC	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	29
PasI	CCCWGGG	1 cut(s)	737
PciSI	GCTCTTC	1 cut(s)	737
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	427, 615
PleI	GAGTC	1 cut(s)	648
PpsI	GAGTC	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	736
PspEI	GGTNACC	1 cut(s)	596
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	2 cut(s)	360, 561
PspPI	GGNCC	3 cut(s)	204, 559, 678
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	239, 714
RsaNI	GTAC	2 cut(s)	238, 713
RseI	CAYNNNNRTG	2 cut(s)	29, 228
SacI	GAGCTC	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	737
SatI	GCNGC	2 cut(s)	426, 614
Sau3AI	GATC	4 cut(s)	358, 417, 438, 670
Sau96I	GGNCC	3 cut(s)	204, 559, 678
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	2 cut(s)	529, 547
SetI	ASST	5 cut(s)	465, 529, 615, 625, 709
SfaNI	GCATC	4 cut(s)	24, 102, 127, 648
SinI	GGWCC	2 cut(s)	559, 678
SmiMI	CAYNNNNRTG	2 cut(s)	29, 228
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	7 cut(s)	155, 209, 258, 353, 501, 565, 587
SsiI	CCGC	2 cut(s)	170, 487
SspMI	CTAG	2 cut(s)	41, 704
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	736
StyI	CCWWGG	2 cut(s)	186, 507
TaaI	ACNGT	2 cut(s)	31, 783
TaqI	TCGA	1 cut(s)	673
TasI	AATT	7 cut(s)	155, 209, 258, 353, 501, 565, 587
TatI	WGTACW	1 cut(s)	712
TfiI	GAWTC	1 cut(s)	412
TscAI	CASTG	2 cut(s)	36, 149
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	2 cut(s)	425, 613
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	29, 263, 569
TspRI	CASTG	2 cut(s)	36, 149
VpaK11BI	GGWCC	2 cut(s)	559, 678
XapI	RAATTY	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	40
XspI	CTAG	2 cut(s)	41, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.