Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002635

Physical Location & Seq

Genomic Coordinates Reverse (-)

9671828 .. 9676026

Gene Structure 4199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG120200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

ATGCAGCACAATATATTTACTACAATGCGTAGCTTGAAGATCATGGATGGGTGTAAGGGCACCCAGGTGTTTGCCATTAACCCATCTGGGACAACCCCCACAAATGGTGGAGTAGGAGACAAGGTTGGTCACAGCCGGGTCAACTCGGTTCGATCCAGATCGAACTGGAGTTTCCAAGCCCCGAACCCGACCGGAAACAATGCCTTGGTCGAGAGTCTTCTTCCCTACGAACTCCCATCGTCGGATCTCCTCGAACCCCAAATCGAGCCTTGCCTCAAGACCGTTGATTTTGTCGAAACGCTGGCTGATGTGTACCGCAGGATTGAGAATTGCCCGCAATTCGAGAAATCTAAGATGTACGTGGAGCAATGCGCGATCTTTCGGGGTATGTCGGATCCGAAACTGTTCCGGCGGAGTCTCCGGTCGGCGAGGCAGCACGCGGTGGATGTCCACGCGAAAGTGGTGCTTGCGGCGTGGTTGAGGTACGAGAGGAGGGAGGATGAGCTGGTTGGGTCATCTTCGATGACTTGTTGCGGTAGAAATGTTGAATGTCCCAAGGCTAGTTTGGCAGCTGGGTATGATCCGGAGTCTGTTTATGATTCATGTTGCTGCTCTCGGAGCGGTGGCGATGTGGATGGTGAGGCTGCGGATGCGGATGAAGAATGCTCAACTTCGAAGGAGGAAGAAGCTGATATGTCATTTTACATTGGAGAGGATGAGATAATGTGTGTAAGGTATAGGATTGCATCGCTCTCGACACCCTTTAGGACAATGTTGTATGGGGGCTTTACGGAGACGAGGAGGCAGAAGATAAATTTCTCACAGAATGGGGTTTCTCCGGAGGCAATGAGAGCGGTGGAGGTGTTTAGCCGGACTGGAAAGTTGGATTCTTTCGAAGTGCGGATTGTTTTGGACTTGCTTTCGTTTTCAAACAGGTTCTGTTGTGATGAGTTGAAGTCAGCTTGTGATGCTCATTTGGCTTCCCTGGTCTGTGAATTGGAGGATGCAATGGTGTTGATTGACTATGGATTGGAGGAGACCGCTTATCTTCTAGTGGCGGCTTGTTTGCAGGTGTTTTTGAGAGAGCTTCCGAATTCGGTGCACAATCCTAACATGATGAGATTGTTTTGTAGTGCGGAAGCTAGGCAAAGATTGGCCATGGCCGGGCATTCTTCTTTTGTTTTGTATTATTTCTTGAGCCAGATTGCCATGGAGGAAGACATGAAGTCCAACACGACAGTGATGCTTCTAGAGAGGCTGGGAGAGTGTGCTACCGAAAGTTGGGAGAAGCAACTCGCATTTCACCAGTTGGGGGTTGTGATGCTTGAGAGGCAGGAATATAAAGATGCTCAGTGCTGGTTTGAATTAGCCATTGAGGCGGGTCATGTGTATTCCATGGTGGGGGTTGCAAGGGCCAAATTCAAGCGTGGCCACAAGTATGTAGCGTACAAGCAGATGAACTCGCTAATTTCGGAGCATACACCAGTTGGGTGGATGTATCAGGAGCGTTCTCTGTATTCTAATGGAAAGGAAAAGATGATGGATTTGAATACTGCTACTCAATTGGATCCAACTCTATCTTATCCATACAAGTTTAGGGCTGTTTCTCTATTGGAAGAGAATCAGATCGGAGCAGCCATCACAGAGATCAATAAGATTATTAGTTTCAAGGTCTCCCCTGATTGTCTTGAACTGCGGGCTTGGTTTTCAATTGCCATGGAGGATTGTGAAGGAGCTCTGAGAGATGTCAGGGCACTTCTGACTTTGGACCCGAATTACATGATGTTTCATGGGAAATTGCATGGTGACCATCTTGTAGAGCTGCTCCAACCTCTTGTCCAGCAATGGAGTCAGGCTGATTGTTGGATGCAACTATATGATCGATGGTCCTCTGTGGATGATATTGGCTCTTTAGCTGTTGTACATCATATGTTGGCAAATGACCCTGGGAAGAGCCTCCTACGCTTTAGGCAGTCTCTCCTTCTATTACGGTTGAATTGTCAAAAGTCCGCAATGCATAGTCTGCGATTGGCTCGAAATCATTCTACTTCTGAACATGAACGGCTTGTGTATGAAGGATGGATATTGTATGACACTGGCCATCGTGAAGAAGCATTGGCAAAGGCTGAGGAGTCCATTTCACTTCAAAGATCATTCGAGGCATTTTTCCTAAAGGCTTATGCTTTAGCAGACTCAAATCTTGATTCTGAGTCTTCAACATATGTGATACAGCTTCTGGAGGAAGCACTCAGATGCCCTTCGGACGGCCTTAGAAAAGGACAAGCTCTAAATAATTTAGGAAGTGTCTACGTAGATTCTGAGAAGCTGGATCTTGCTGCTGACTGCTACACAAATGCACTCAACATTAAGCATACACGAGCACATCAGGGTCTAGCACGAGTATATCATCTTAAAAATCAACGCAAAGCTGCATATGATGAGATGACAAAGCTGATAGAGAAGGCTCGCAACAATGCATCAGCTTATGAGAAACGTTCAGAATACTGTGATCGTGACATGGCAAAGAATGATCTAAGTATGGCAACACAATTAGATCCATTGAGGACATATCCGTACAGATATAGGGCAGCAGTTTTGATGGATGACCACAAAGAAGCAGAAGCTATTGAAGAGCTAAGTAAGGCCATAGCTTTCAAGCCGGACCTCCAGCTTCTACATCTTCGAGCAGCATTCCACGAATCTATGAGTGATTTTGTGTCCACCGTCCGAGACTGTGAAGCAGCCCTCTGCCTTGACCCCAACCATGCCGACACTCATGAACTCTATGGTAAAGCACGGGAGCGCTTAAATGAACAACAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_8

Protein Analysis

941

Amino Acids

106.79

Weight (kDa)

5.61

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51770 AT3G51770
fragaria_vesca	FvH4_3g39300 FvH4_3g39300 FvH4_3g39300 FvH4_6g10980 FvH4_6g10980 FvH4_6g10980 FvH4_6g10980
malus_domestica	MD03G1062500.v1.1 MD04G1162900.v1.1 MD11G1066100.v1.1 MD12G1176500.v1.1
prunus_persica	Prupe.6G052500_v2.0.a1 Prupe.6G052500_v2.0.a1 Prupe.6G282400_v2.0.a1
pyrus_communis	pycom03g05010 pycom11g05600 pycom12g16650
rosa_chinensis	RchiOBHm_Chr3g0462291 RchiOBHm_Chr5g0070731
rosa_laevigata	RLG00000024871 RLG00000036154
rosa_multiflora	Rmu_co8338553.1_g000001 Rmu_sc0002944.1_g000041 Rmu_sc0036080.1_g000002
rosa_roxburghii	Rroxscaffold_1G00010460 Rroxscaffold_6G00417610
rosa_rugosa	Rorug03G0055500 Rorug05G0408100 Rorug05G0408200
rosa_samantha	Rh3AG114300 Rh3BG117400 Rh3CG120200 Rh3DG119200 Rh5AG463600 Rh5CG505800 Rh5DG494000
rosa_wichuraiana	Rw3G009650 Rw5G043150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1060
Acc36I	ACCTGC	1 cut(s)	1060
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	2 cut(s)	621, 854
AccI	GTMKAC	1 cut(s)	2307
AccII	CGCG	3 cut(s)	374, 440, 455
AccIII	TCCGGA	2 cut(s)	583, 838
AclI	AACGTT	1 cut(s)	2494
AclWI	GGATC	9 cut(s)	147, 252, 389, 402, 575, 1562, 1575, 2337, 2549
AcoI	YGGCCR	4 cut(s)	1155, 1161, 1429, 2098
AcsI	RAATTY	3 cut(s)	814, 1093, 1418
AdeI	CACNNNGTG	1 cut(s)	442
AfaI	GTAC	6 cut(s)	314, 359, 485, 1448, 1923, 2576
AfeI	AGCGCT	1 cut(s)	2804
AfiI	CCNNNNNNNGG	7 cut(s)	104, 241, 1164, 1281, 1312, 1401, 2264
AhdI	GACNNNNNGTC	1 cut(s)	1225
AjnI	CCWGG	3 cut(s)	63, 984, 1945
AleI	CACNNNNGTG	2 cut(s)	65, 1238
Alw21I	GWGCWC	3 cut(s)	1104, 1738, 2383
Alw26I	GTCTC	7 cut(s)	111, 422, 788, 1031, 1678, 1980, 2724
Alw44I	GTGCAC	1 cut(s)	1100
AlwI	GGATC	9 cut(s)	147, 252, 389, 402, 575, 1562, 1575, 2337, 2549
AlwNI	CAGNNNCTG	2 cut(s)	939, 2236
Aor13HI	TCCGGA	2 cut(s)	583, 838
Aor51HI	AGCGCT	1 cut(s)	2804
AoxI	GGCC	7 cut(s)	1155, 1161, 1413, 1429, 2098, 2266, 2643
ApaLI	GTGCAC	1 cut(s)	1100
ApoI	RAATTY	3 cut(s)	814, 1093, 1418
Asp700I	GAANNNNTTC	2 cut(s)	404, 2041
AspLEI	GCGC	2 cut(s)	374, 2805
AspS9I	GGNCC	4 cut(s)	1413, 1768, 1887, 2662
AsuC2I	CCSGG	2 cut(s)	137, 1165
AsuHPI	GGTGA	3 cut(s)	650, 1295, 1817
AsuII	TTCGAA	2 cut(s)	674, 894
AvaII	GGWCC	3 cut(s)	1768, 1887, 2662
BaeGI	GKGCMC	3 cut(s)	62, 1104, 1756
BalI	TGGCCA	3 cut(s)	1157, 1431, 2100
BamHI	GGATCC	2 cut(s)	394, 1567
BanI	GGYRCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	1738
BauI	CACGAG	2 cut(s)	2376, 2397
BbsI	GAAGAC	3 cut(s)	209, 1224, 2205
Bbv12I	GWGCWC	3 cut(s)	1104, 1738, 2383
BbvCI	CCTCAGC	1 cut(s)	2127
BceAI	ACGGC	2 cut(s)	2078, 2281
BcgI	CGANNNNNNTGC	8 cut(s)	445, 479, 735, 769, 1081, 1115, 1225, 1259
BciT130I	CCWGG	3 cut(s)	65, 986, 1947
BcnI	CCSGG	2 cut(s)	137, 1165
BcoDI	GTCTC	7 cut(s)	111, 422, 788, 1031, 1678, 1980, 2724
BfaI	CTAG	5 cut(s)	561, 1052, 1143, 1250, 2393
BfoI	RGCGCY	1 cut(s)	2806
BfuAI	ACCTGC	1 cut(s)	1060
BglI	GCCNNNNNGGC	1 cut(s)	1376
Bme1390I	CCNGG	5 cut(s)	65, 137, 986, 1165, 1947
Bme18I	GGWCC	3 cut(s)	1768, 1887, 2662
BmeRI	GACNNNNNGTC	1 cut(s)	1225
BmgT120I	GGNCC	4 cut(s)	1413, 1768, 1887, 2662
BmiI	GGNNCC	4 cut(s)	61, 396, 1569, 1770
BmrFI	CCNGG	5 cut(s)	65, 137, 986, 1165, 1947
BpiI	GAAGAC	3 cut(s)	209, 1224, 2205
BpmI	CTGGAG	3 cut(s)	187, 2258, 2651
Bpu10I	CCTNAGC	1 cut(s)	2127
Bpu14I	TTCGAA	2 cut(s)	674, 894
BpuEI	CTTGAG	3 cut(s)	260, 1216, 1346
BpuMI	CCSGG	2 cut(s)	137, 1165
Bsa29I	ATCGAT	1 cut(s)	1882
BsaAI	YACGTR	2 cut(s)	361, 2311
BsaBI	GATNNNNATC	1 cut(s)	157
BsaI	GGTCTC	2 cut(s)	1031, 1678
BsaWI	WCCGGW	4 cut(s)	191, 420, 583, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	7 cut(s)	104, 241, 1164, 1281, 1312, 1401, 2264
Bse1I	ACTGG	5 cut(s)	170, 880, 1306, 1484, 2101
Bse3DI	GCAATG	5 cut(s)	374, 852, 1014, 1850, 2019
Bse8I	GATNNNNATC	1 cut(s)	157
BseAI	TCCGGA	2 cut(s)	583, 838
BseBI	CCWGG	3 cut(s)	65, 986, 1947
BseCI	ATCGAT	1 cut(s)	1882
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	7 cut(s)	104, 241, 1164, 1281, 1312, 1401, 2264
BseMI	GCAATG	5 cut(s)	374, 852, 1014, 1850, 2019
BseMII	CTCAG	6 cut(s)	1364, 1730, 2118, 2199, 2263, 2310
BseNI	ACTGG	5 cut(s)	170, 880, 1306, 1484, 2101
BseRI	GAGGAG	5 cut(s)	239, 505, 814, 1049, 2144
BseSI	GKGCMC	3 cut(s)	62, 1104, 1756
BseYI	CCCAGC	2 cut(s)	572, 1258
Bsh1236I	CGCG	3 cut(s)	374, 440, 455
Bsh1285I	CGRYCG	2 cut(s)	192, 425
BshFI	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
BshNI	GGYRCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	1882
BsiEI	CGRYCG	2 cut(s)	192, 425
BsiHKAI	GWGCWC	3 cut(s)	1104, 1738, 2383
BsiSI	CCGG	9 cut(s)	136, 192, 409, 421, 584, 839, 871, 1164, 2660
BslFI	GGGAC	2 cut(s)	103, 537
BslI	CCNNNNNNNGG	7 cut(s)	104, 241, 1164, 1281, 1312, 1401, 2264
BsmAI	GTCTC	7 cut(s)	111, 422, 788, 1031, 1678, 1980, 2724
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	2 cut(s)	103, 537
BsmI	GAATGC	3 cut(s)	668, 1168, 2690
BsnI	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
Bso31I	GGTCTC	2 cut(s)	1031, 1678
Bsp119I	TTCGAA	2 cut(s)	674, 894
Bsp1286I	GDGCHC	5 cut(s)	62, 1104, 1738, 1756, 2383
Bsp13I	TCCGGA	2 cut(s)	583, 838
Bsp1407I	TGTACA	1 cut(s)	1921
Bsp19I	CCATGG	4 cut(s)	1158, 1209, 1395, 1716
BspANI	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
BspCNI	CTCAG	6 cut(s)	1363, 1731, 2119, 2200, 2262, 2311
BspDI	ATCGAT	1 cut(s)	1882
BspEI	TCCGGA	2 cut(s)	583, 838
BspFNI	CGCG	3 cut(s)	374, 440, 455
BspHI	TCATGA	1 cut(s)	2776
BspLI	GGNNCC	4 cut(s)	61, 396, 1569, 1770
BspMI	ACCTGC	1 cut(s)	1060
BspPI	GGATC	9 cut(s)	147, 252, 389, 402, 575, 1562, 1575, 2337, 2549
BspQI	GCTCTTC	2 cut(s)	1946, 2625
BspT104I	TTCGAA	2 cut(s)	674, 894
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	2 cut(s)	1031, 1678
BsrBI	CCGCTC	2 cut(s)	621, 854
BsrDI	GCAATG	5 cut(s)	374, 852, 1014, 1850, 2019
BsrGI	TGTACA	1 cut(s)	1921
BsrI	ACTGG	5 cut(s)	170, 880, 1306, 1484, 2101
BssSI	CACGAG	2 cut(s)	2376, 2397
BssT1I	CCWWGG	6 cut(s)	204, 555, 1158, 1209, 1395, 1716
Bst2BI	CACGAG	2 cut(s)	2376, 2397
Bst2UI	CCWGG	3 cut(s)	65, 986, 1947
Bst4CI	ACNGT	7 cut(s)	283, 405, 1240, 1992, 2507, 2725, 2735
Bst6I	CTCTTC	3 cut(s)	1611, 1946, 2625
BstAPI	GCANNNNNTGC	1 cut(s)	2023
BstAUI	TGTACA	1 cut(s)	1921
BstBAI	YACGTR	2 cut(s)	361, 2311
BstBI	TTCGAA	2 cut(s)	674, 894
BstC8I	GCNNGC	6 cut(s)	303, 335, 438, 468, 1698, 2467
BstDSI	CCRYGG	4 cut(s)	1158, 1209, 1395, 1716
BstEII	GGTNACC	1 cut(s)	1805
BstFNI	CGCG	3 cut(s)	374, 440, 455
BstH2I	RGCGCY	1 cut(s)	2806
BstHHI	GCGC	2 cut(s)	374, 2805
BstMAI	GTCTC	7 cut(s)	111, 422, 788, 1031, 1678, 1980, 2724
BstMCI	CGRYCG	2 cut(s)	192, 425
BstNI	CCWGG	3 cut(s)	65, 986, 1947
BstPI	GGTNACC	1 cut(s)	1805
BstSCI	CCNGG	5 cut(s)	63, 135, 984, 1163, 1945
BstSLI	GKGCMC	3 cut(s)	62, 1104, 1756
BstSNI	TACGTA	1 cut(s)	2311
BstUI	CGCG	3 cut(s)	374, 440, 455
BstV2I	GAAGAC	3 cut(s)	209, 1224, 2205
BstX2I	RGATCY	5 cut(s)	244, 394, 1567, 2329, 2554
BstXI	CCANNNNNNTGG	1 cut(s)	1491
BstYI	RGATCY	5 cut(s)	244, 394, 1567, 2329, 2554
Bsu15I	ATCGAT	1 cut(s)	1882
BsuRI	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
BsuTUI	ATCGAT	1 cut(s)	1882
BtgI	CCRYGG	4 cut(s)	1158, 1209, 1395, 1716
BtgZI	GCGATG	2 cut(s)	642, 732
BtsIMutI	CAGTG	3 cut(s)	1245, 1358, 2094
BveI	ACCTGC	1 cut(s)	1060
Cac8I	GCNNGC	6 cut(s)	303, 335, 438, 468, 1698, 2467
CaiI	CAGNNNCTG	2 cut(s)	939, 2236
CciI	TCATGA	1 cut(s)	2776
CfoI	GCGC	2 cut(s)	374, 2805
Cfr13I	GGNCC	4 cut(s)	1413, 1768, 1887, 2662
ClaI	ATCGAT	1 cut(s)	1882
Csp6I	GTAC	6 cut(s)	313, 358, 484, 1447, 1922, 2575
CviQI	GTAC	6 cut(s)	313, 358, 484, 1447, 1922, 2575
DraIII	CACNNNGTG	1 cut(s)	442
DriI	GACNNNNNGTC	1 cut(s)	1225
EaeI	YGGCCR	4 cut(s)	1155, 1161, 1429, 2098
Eam1104I	CTCTTC	3 cut(s)	1611, 1946, 2625
Eam1105I	GACNNNNNGTC	1 cut(s)	1225
EarI	CTCTTC	3 cut(s)	1611, 1946, 2625
EciI	GGCGGA	1 cut(s)	427
Ecl136II	GAGCTC	1 cut(s)	1736
Eco105I	TACGTA	1 cut(s)	2311
Eco130I	CCWWGG	6 cut(s)	204, 555, 1158, 1209, 1395, 1716
Eco24I	GRGCYC	1 cut(s)	1738
Eco31I	GGTCTC	2 cut(s)	1031, 1678
Eco47I	GGWCC	3 cut(s)	1768, 1887, 2662
Eco47III	AGCGCT	1 cut(s)	2804
Eco53kI	GAGCTC	1 cut(s)	1736
Eco91I	GGTNACC	1 cut(s)	1805
EcoICRI	GAGCTC	1 cut(s)	1736
EcoO65I	GGTNACC	1 cut(s)	1805
EcoRI	GAATTC	1 cut(s)	1093
EcoRII	CCWGG	3 cut(s)	63, 984, 1945
EcoT14I	CCWWGG	6 cut(s)	204, 555, 1158, 1209, 1395, 1716
EcoT22I	ATGCAT	2 cut(s)	2019, 2479
EcoT38I	GRGCYC	1 cut(s)	1738
ErhI	CCWWGG	6 cut(s)	204, 555, 1158, 1209, 1395, 1716
Esp3I	CGTCTC	1 cut(s)	788
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	2 cut(s)	103, 537
FauI	CCCGC	3 cut(s)	342, 1372, 1689
FauNDI	CATATG	3 cut(s)	1929, 2221, 2434
FblI	GTMKAC	1 cut(s)	2307
FriOI	GRGCYC	1 cut(s)	1738
FspBI	CTAG	5 cut(s)	561, 1052, 1143, 1250, 2393
GlaI	GCGC	2 cut(s)	373, 2804
GsaI	CCCAGC	2 cut(s)	576, 1262
GsuI	CTGGAG	3 cut(s)	187, 2258, 2651
HaeII	RGCGCY	1 cut(s)	2806
HaeIII	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
HapII	CCGG	9 cut(s)	136, 192, 409, 421, 584, 839, 871, 1164, 2660
HhaI	GCGC	2 cut(s)	374, 2805
Hin6I	GCGC	2 cut(s)	372, 2803
HinP1I	GCGC	2 cut(s)	372, 2803
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HpaII	CCGG	9 cut(s)	136, 192, 409, 421, 584, 839, 871, 1164, 2660
HphI	GGTGA	3 cut(s)	650, 1295, 1817
Hpy166II	GTNNAC	6 cut(s)	142, 313, 451, 1102, 2308, 2721
Hpy8I	GTNNAC	6 cut(s)	142, 313, 451, 1102, 2308, 2721
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	6 cut(s)	670, 1724, 1991, 2069, 2268, 2455
HpyCH4III	ACNGT	7 cut(s)	283, 405, 1240, 1992, 2507, 2725, 2735
HpyCH4IV	ACGT	3 cut(s)	360, 2310, 2494
HpySE526I	ACGT	3 cut(s)	360, 2310, 2494
HspAI	GCGC	2 cut(s)	372, 2803
Kpn2I	TCCGGA	2 cut(s)	583, 838
LguI	GCTCTTC	2 cut(s)	1946, 2625
LmnI	GCTCC	8 cut(s)	364, 618, 1474, 1504, 1631, 1733, 1830, 2800
MaeI	CTAG	5 cut(s)	561, 1052, 1143, 1250, 2393
MaeII	ACGT	3 cut(s)	360, 2310, 2494
MaeIII	GTNAC	3 cut(s)	128, 1805, 2513
MbiI	CCGCTC	2 cut(s)	621, 854
MfeI	CAATTG	2 cut(s)	1562, 1710
MflI	RGATCY	5 cut(s)	244, 394, 1567, 2329, 2554
MhlI	GDGCHC	5 cut(s)	62, 1104, 1738, 1756, 2383
MlsI	TGGCCA	3 cut(s)	1157, 1431, 2100
MluNI	TGGCCA	3 cut(s)	1157, 1431, 2100
MlyI	GAGTC	7 cut(s)	223, 424, 596, 1858, 2141, 2186, 2219
MmeI	TCCRAC	7 cut(s)	222, 372, 864, 1254, 1595, 1844, 1852
Mox20I	TGGCCA	3 cut(s)	1157, 1431, 2100
Mph1103I	ATGCAT	2 cut(s)	2019, 2479
MroI	TCCGGA	2 cut(s)	583, 838
MroXI	GAANNNNTTC	2 cut(s)	404, 2041
MscI	TGGCCA	3 cut(s)	1157, 1431, 2100
MseI	TTAA	4 cut(s)	78, 2367, 2412, 2807
MslI	CAYNNNNRTG	4 cut(s)	65, 1238, 1437, 2251
Msp20I	TGGCCA	3 cut(s)	1157, 1431, 2100
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	9 cut(s)	136, 192, 409, 421, 584, 839, 871, 1164, 2660
MspR9I	CCNGG	5 cut(s)	65, 137, 986, 1165, 1947
MunI	CAATTG	2 cut(s)	1562, 1710
Mva1269I	GAATGC	3 cut(s)	668, 1168, 2690
MvaI	CCWGG	3 cut(s)	65, 986, 1947
MvnI	CGCG	3 cut(s)	374, 440, 455
NciI	CCSGG	2 cut(s)	137, 1165
NcoI	CCATGG	4 cut(s)	1158, 1209, 1395, 1716
NdeI	CATATG	3 cut(s)	1929, 2221, 2434
NlaIV	GGNNCC	4 cut(s)	61, 396, 1569, 1770
NmuCI	GTSAC	3 cut(s)	128, 1805, 2513
NsiI	ATGCAT	2 cut(s)	2019, 2479
NspV	TTCGAA	2 cut(s)	674, 894
OliI	CACNNNNGTG	2 cut(s)	65, 1238
PagI	TCATGA	1 cut(s)	2776
PaqCI	CACCTGC	1 cut(s)	1060
PasI	CCCWGGG	1 cut(s)	1946
PciSI	GCTCTTC	2 cut(s)	1946, 2625
PctI	GAATGC	3 cut(s)	668, 1168, 2690
PdmI	GAANNNNTTC	2 cut(s)	404, 2041
PfeI	GAWTC	6 cut(s)	599, 887, 1621, 2204, 2315, 2699
PleI	GAGTC	7 cut(s)	222, 423, 595, 1857, 2140, 2186, 2218
PpsI	GAGTC	7 cut(s)	222, 423, 595, 1857, 2140, 2186, 2218
Ppu21I	YACGTR	2 cut(s)	361, 2311
Psp124BI	GAGCTC	1 cut(s)	1738
Psp1406I	AACGTT	1 cut(s)	2494
Psp6I	CCWGG	3 cut(s)	63, 984, 1945
PspEI	GGTNACC	1 cut(s)	1805
PspFI	CCCAGC	2 cut(s)	572, 1258
PspGI	CCWGG	3 cut(s)	63, 984, 1945
PspN4I	GGNNCC	4 cut(s)	61, 396, 1569, 1770
PspPI	GGNCC	4 cut(s)	1413, 1768, 1887, 2662
PstNI	CAGNNNCTG	2 cut(s)	939, 2236
PsuI	RGATCY	5 cut(s)	244, 394, 1567, 2329, 2554
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	6 cut(s)	314, 359, 485, 1448, 1923, 2576
RsaNI	GTAC	6 cut(s)	313, 358, 484, 1447, 1922, 2575
RseI	CAYNNNNRTG	4 cut(s)	65, 1238, 1437, 2251
SacI	GAGCTC	1 cut(s)	1738
SapI	GCTCTTC	2 cut(s)	1946, 2625
SaqAI	TTAA	4 cut(s)	78, 2367, 2412, 2807
Sau96I	GGNCC	4 cut(s)	1413, 1768, 1887, 2662
SchI	GAGTC	7 cut(s)	223, 424, 596, 1858, 2141, 2186, 2219
ScrFI	CCNGG	5 cut(s)	65, 137, 986, 1165, 1947
SduI	GDGCHC	5 cut(s)	62, 1104, 1738, 1756, 2383
SfuI	TTCGAA	2 cut(s)	674, 894
SinI	GGWCC	3 cut(s)	1768, 1887, 2662
SmiMI	CAYNNNNRTG	4 cut(s)	65, 1238, 1437, 2251
SmlI	CTYRAG	3 cut(s)	275, 1195, 1325
SmoI	CTYRAG	3 cut(s)	275, 1195, 1325
SnaBI	TACGTA	1 cut(s)	2311
SspMI	CTAG	5 cut(s)	561, 1052, 1143, 1250, 2393
SstI	GAGCTC	1 cut(s)	1738
StyD4I	CCNGG	5 cut(s)	63, 135, 984, 1163, 1945
StyI	CCWWGG	6 cut(s)	204, 555, 1158, 1209, 1395, 1716
TaaI	ACNGT	7 cut(s)	283, 405, 1240, 1992, 2507, 2725, 2735
TaiI	ACGT	3 cut(s)	363, 2313, 2497
TatI	WGTACW	1 cut(s)	1921
TauI	GCSGC	2 cut(s)	473, 1061
TfiI	GAWTC	6 cut(s)	599, 887, 1621, 2204, 2315, 2699
Tru1I	TTAA	4 cut(s)	78, 2367, 2412, 2807
Tru9I	TTAA	4 cut(s)	78, 2367, 2412, 2807
TscAI	CASTG	3 cut(s)	1245, 1358, 2101
TseFI	GTSAC	3 cut(s)	128, 1805, 2513
Tsp45I	GTSAC	3 cut(s)	128, 1805, 2513
TspDTI	ATGAA	9 cut(s)	591, 672, 1238, 1472, 1778, 2073, 2088, 2793, 2826
TspGWI	ACGGA	2 cut(s)	806, 2562
TspRI	CASTG	3 cut(s)	1245, 1358, 2101
VneI	GTGCAC	1 cut(s)	1100
VpaK11BI	GGWCC	3 cut(s)	1768, 1887, 2662
XapI	RAATTY	3 cut(s)	814, 1093, 1418
XbaI	TCTAGA	1 cut(s)	1249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	2307
XmnI	GAANNNNTTC	2 cut(s)	404, 2041
XspI	CTAG	5 cut(s)	561, 1052, 1143, 1250, 2393
Zsp2I	ATGCAT	2 cut(s)	2019, 2479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.