Rorug05G0408100

Ethylene-overproduction protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002635
Physical Location & Seq
Forward (+)
56323936 .. 56331179
7244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0408100.1

Sequence Viewer

Length: 504 bp
ATGGATGGCGGCGTGGGTCGTGGGTGCTGGATCGAATGGTGCGTAGGCATGGTTCGAGGTGGCAAGGTCCTGCGGCTTCGTGGCAGCTGGCTCCGTGGCGGCGAATCGGGCGGTGGCAGTTTTGTGGTGATGGAGTCAGGTGCAGTCATTGCTGAGATTGATATTGATTTTGGGGCATTTGGATTTTCAATCAGGATGAGAGCAGTATCGAAATTGTCTGAGACGATAGAGATGAGAGTGCATATACACTGCCCCGGATGCGAGAGCAAGGTTAGAAGTACACTTCAGAAGCTAAAAGGGCCATTTAAGATTAATGGTGTTCCTCTTAGACGGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTAACATCTCTGGTGTTAACGTGGAGAATTTTGATGACAAGTCCTTTGCCAAGGAGGGTCAAAAGAAAAAAAGAAGGGAGAAGGCGAGTTCTTTGAAGTGGAGAAGGAGGTGCTTCGATTCTTATTTCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB TPR_1 TPR_8

Protein Analysis

167

Amino Acids

18.64

Weight (kDa)

10.12

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 104 - 151 2.1e-15 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 9, 73, 99, 111
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 280
AgsI TTSAA 3 cut(s) 189, 363, 466
AluBI AGCT 2 cut(s) 87, 292
AluI AGCT 2 cut(s) 87, 292
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 38
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 397
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AseI ATTAAT 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 67, 299
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 139, 346
AvaII GGWCC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 124
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 4 cut(s) 10, 74, 85, 100
BlsI GCNGC 4 cut(s) 11, 75, 86, 101
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 67, 299
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 255
BsaJI CCNNGG 4 cut(s) 94, 253, 366, 420
Bse3DI GCAATG 1 cut(s) 147
BseDI CCNNGG 4 cut(s) 94, 253, 366, 420
BseGI GGATG 3 cut(s) 10, 201, 263
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 144, 210
BseXI GCAGC 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
BsnI GGCC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 4 cut(s) 9, 73, 99, 111
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 145, 211
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 147
BssECI CCNNGG 4 cut(s) 94, 253, 366, 420
BssMI GATC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 366, 420
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 3 cut(s) 153, 219, 326
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 3 cut(s) 10, 201, 263
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 4 cut(s) 108, 149, 258, 298
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 3 cut(s) 10, 201, 263
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 67, 299
Csp6I GTAC 1 cut(s) 279
CviAII CATG 1 cut(s) 49
CviJI RGCY 5 cut(s) 76, 87, 91, 292, 301
CviKI_1 RGCY 5 cut(s) 76, 87, 91, 292, 301
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 3 cut(s) 153, 219, 326
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 366, 420
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 366, 420
ErhI CCWWGG 2 cut(s) 366, 420
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 1 cut(s) 52
FaiI YATR 4 cut(s) 50, 243, 245, 348
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 10, 74, 85, 100
FokI GGATG 3 cut(s) 17, 208, 270
Fsp4HI GCNGC 4 cut(s) 10, 74, 85, 100
GluI GCNGC 4 cut(s) 10, 74, 85, 100
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 255
Hin1II CATG 1 cut(s) 52
HincII GTYRAC 2 cut(s) 373, 388
HindII GTYRAC 2 cut(s) 373, 388
HinfI GANTC 3 cut(s) 104, 134, 488
HpaI GTTAAC 2 cut(s) 373, 388
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 139, 346
Hpy166II GTNNAC 4 cut(s) 281, 337, 373, 388
Hpy188I TCNGA 3 cut(s) 220, 288, 500
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 4 cut(s) 281, 337, 373, 388
HpyAV CCTTC 3 cut(s) 438, 445, 468
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 143, 241
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 149, 258, 298
HpyF3I CTNAG 3 cut(s) 153, 219, 326
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 1 cut(s) 52
KspAI GTTAAC 2 cut(s) 373, 388
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 7 cut(s) 13, 73, 83, 123, 178, 268, 366
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 248
MaeII ACGT 1 cut(s) 390
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MluCI AATT 2 cut(s) 212, 397
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 4 cut(s) 50, 333, 418, 471
MseI TTAA 4 cut(s) 306, 312, 372, 387
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 108, 149, 258, 298
NciI CCSGG 1 cut(s) 255
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 2 cut(s) 104, 488
PkrI GCNGC 4 cut(s) 11, 75, 86, 101
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 67, 299
PspPPI RGGWCCY 1 cut(s) 67
PsrI GAACNNNNNNTAC 2 cut(s) 36, 68
PvuII CAGCTG 1 cut(s) 87
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 4 cut(s) 306, 312, 372, 387
SatI GCNGC 4 cut(s) 10, 74, 85, 100
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 67, 299
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 255
SetI ASST 9 cut(s) 61, 69, 89, 142, 273, 294, 372, 393, 482
SfaNI GCATC 1 cut(s) 248
SinI GGWCC 1 cut(s) 67
Sse9I AATT 2 cut(s) 212, 397
SsiI CCGC 4 cut(s) 9, 73, 99, 111
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 2 cut(s) 366, 420
TaiI ACGT 1 cut(s) 393
TaqI TCGA 4 cut(s) 33, 55, 209, 486
TasI AATT 2 cut(s) 212, 397
TatI WGTACW 1 cut(s) 278
TauI GCSGC 3 cut(s) 12, 76, 102
TfiI GAWTC 2 cut(s) 104, 488
Tru1I TTAA 4 cut(s) 306, 312, 372, 387
Tru9I TTAA 4 cut(s) 306, 312, 372, 387
TscAI CASTG 1 cut(s) 254
TseI GCWGC 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 67
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.