Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002635

Physical Location & Seq

Genomic Coordinates Reverse (-)

56346628 .. 56347411

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0408200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGTGAAGGGGTTTCACGGTGAGTTTTCTTCCTTTTCCGGCTACCTTTGGTTTCAACTCAAGGGCTTGAAAAATTTGTTCAAGGAAAGAAAAATGACCAACCAAAATGTGCTTATTTCCGATGTCAAAGGCGTGGCTGTGGCTGTTGCTGCCATGAAGAATCAGTCTGTGTTCTCTTCATCGGTGGCGAATTCCATGATCGAATCAGGAGGAGGAGGCGGGTGTAATTTCACCATTCCCAGAAGTATTAAGCTCTTGAAGGTTGAGACTGCAGAGGTTGGTGGTGGGGGTGGAGCTGCCCGAGTCAATGCTTGTATGGCAGGATCTGATCCTGAGTCTTTGGATTTGCAGGTTCTGAGTGATCCACAGAAAAGAGCAATCTATGATCAATATGGTGAAGAAGGCCTTAAAGGCAGCATTCCGCCTCCAGATGCTGGGGGGCTTGGTGGTGCCACATATTTCCAAACTGGAGATGGTCCAAATGTGTTTAGATTCAACCCCAGGAATGCCAACGACATTTTTGCGGAGATCTTCGGGTTCTCTAGCCCGATGGGTGGTGGAATGGGAGGAGGTGGTTTTGGTAGTGGCATGAGGGGTGGAAGATCATCCTTTGGTGGAATGTTTGGGGATGACATGTTTAGTTCTTTTGGAGAAGGAAAAATGTCTGGGCTGTGTAGGGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_1 TPR_8

Protein Analysis

228

Amino Acids

23.71

Weight (kDa)

8.42

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51770 AT3G51770
fragaria_vesca	FvH4_3g39300 FvH4_3g39300 FvH4_3g39300 FvH4_6g10980 FvH4_6g10980 FvH4_6g10980 FvH4_6g10980
malus_domestica	MD03G1062500.v1.1 MD04G1162900.v1.1 MD11G1066100.v1.1 MD12G1176500.v1.1
prunus_persica	Prupe.6G052500_v2.0.a1 Prupe.6G052500_v2.0.a1 Prupe.6G282400_v2.0.a1
pyrus_communis	pycom03g05010 pycom11g05600 pycom12g16650
rosa_chinensis	RchiOBHm_Chr3g0462291 RchiOBHm_Chr5g0070731
rosa_laevigata	RLG00000024871 RLG00000036154
rosa_multiflora	Rmu_co8338553.1_g000001 Rmu_sc0002944.1_g000041 Rmu_sc0036080.1_g000002
rosa_roxburghii	Rroxscaffold_1G00010460 Rroxscaffold_6G00417610
rosa_rugosa	Rorug03G0055500 Rorug05G0408100 Rorug05G0408200
rosa_samantha	Rh3AG114300 Rh3BG117400 Rh3CG120200 Rh3DG119200 Rh5AG463600 Rh5CG505800 Rh5DG494000
rosa_wichuraiana	Rw3G009650 Rw5G043150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	434
AciI	CCGC	3 cut(s)	219, 422, 524
AclWI	GGATC	3 cut(s)	323, 331, 356
AcsI	RAATTY	2 cut(s)	73, 190
AfiI	CCNNNNNNNGG	2 cut(s)	434, 554
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	5 cut(s)	56, 70, 82, 259, 496
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	253, 296
AluI	AGCT	2 cut(s)	253, 296
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	323, 331, 356
AlwNI	CAGNNNCTG	3 cut(s)	326, 355, 434
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	3 cut(s)	149, 296, 414
ApoI	RAATTY	2 cut(s)	73, 190
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	4 cut(s)	16, 32, 223, 407
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	449
BbvI	GCAGC	3 cut(s)	136, 283, 426
BccI	CCATC	2 cut(s)	467, 544
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	3 cut(s)	150, 297, 415
BlsI	GCNGC	3 cut(s)	151, 298, 416
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	421
BpmI	CTGGAG	2 cut(s)	411, 489
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 554
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	2 cut(s)	605, 634
BseLI	CCNNNNNNNGG	2 cut(s)	434, 554
BseMII	CTCAG	2 cut(s)	324, 347
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	3 cut(s)	225, 228, 582
BseXI	GCAGC	3 cut(s)	136, 283, 426
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	434, 554
BsmAI	GTCTC	1 cut(s)	260
BsmI	GAATGC	2 cut(s)	417, 511
BsnI	GGCC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	300
Bsp143I	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
BspACI	CCGC	3 cut(s)	219, 422, 524
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	325, 348
BspLI	GGNNCC	1 cut(s)	451
BspMAI	CTGCAG	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	3 cut(s)	323, 331, 356
BspT107I	GGYRCC	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	333, 356
BstF5I	GGATG	2 cut(s)	605, 634
BstKTI	GATC	7 cut(s)	201, 326, 331, 364, 388, 531, 605
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 317, 411
BstNI	CCWGG	1 cut(s)	502
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	136, 283, 426
BstX2I	RGATCY	2 cut(s)	323, 528
BstYI	RGATCY	2 cut(s)	323, 528
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	2 cut(s)	605, 634
BveI	ACCTGC	1 cut(s)	340
CaiI	CAGNNNCTG	3 cut(s)	326, 355, 434
Cfr13I	GGNCC	1 cut(s)	476
CviAII	CATG	4 cut(s)	154, 196, 589, 634
DdeI	CTNAG	2 cut(s)	333, 356
DpnI	GATC	7 cut(s)	200, 325, 330, 363, 387, 530, 604
DpnII	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	500
FaeI	CATG	4 cut(s)	157, 199, 592, 637
FaiI	YATR	8 cut(s)	155, 197, 317, 384, 393, 457, 590, 635
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	4 cut(s)	153, 195, 588, 633
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	150, 297, 415
FokI	GGATG	2 cut(s)	592, 641
Fsp4HI	GCNGC	3 cut(s)	150, 297, 415
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	3 cut(s)	150, 297, 415
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	2 cut(s)	411, 489
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	4 cut(s)	157, 199, 592, 637
HinfI	GANTC	5 cut(s)	160, 203, 303, 335, 492
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	4 cut(s)	16, 32, 223, 407
Hpy188I	TCNGA	3 cut(s)	121, 328, 357
Hpy188III	TCNNGA	4 cut(s)	207, 256, 332, 428
HpyAV	CCTTC	3 cut(s)	253, 395, 647
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	272, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 317, 411
HpyF3I	CTNAG	2 cut(s)	333, 356
Hsp92II	CATG	4 cut(s)	157, 199, 592, 637
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	3 cut(s)	136, 283, 426
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	543
MalI	GATC	7 cut(s)	200, 325, 330, 363, 387, 530, 604
MboI	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
MboII	GAAGA	6 cut(s)	21, 168, 169, 410, 523, 612
MflI	RGATCY	2 cut(s)	323, 528
MluCI	AATT	3 cut(s)	73, 190, 226
MlyI	GAGTC	2 cut(s)	312, 344
MnlI	CCTC	8 cut(s)	203, 206, 209, 268, 435, 560, 563, 585
MseI	TTAA	2 cut(s)	249, 408
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	2 cut(s)	417, 511
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	3 cut(s)	149, 317, 411
NdeII	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
NlaIII	CATG	4 cut(s)	157, 199, 592, 637
NlaIV	GGNNCC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	405
PciI	ACATGT	1 cut(s)	633
PctI	GAATGC	2 cut(s)	417, 511
PfeI	GAWTC	3 cut(s)	160, 203, 492
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	151, 298, 416
PleI	GAGTC	2 cut(s)	311, 343
PpsI	GAGTC	2 cut(s)	311, 343
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	274
PstNI	CAGNNNCTG	3 cut(s)	326, 355, 434
PsuI	RGATCY	2 cut(s)	323, 528
SaqAI	TTAA	2 cut(s)	249, 408
SatI	GCNGC	3 cut(s)	150, 297, 415
Sau3AI	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	2 cut(s)	312, 344
ScrFI	CCNGG	1 cut(s)	502
SetI	ASST	7 cut(s)	48, 255, 264, 279, 298, 354, 574
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	73, 190, 226
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	3 cut(s)	219, 422, 524
SspMI	CTAG	1 cut(s)	543
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	201
TasI	AATT	3 cut(s)	73, 190, 226
TfiI	GAWTC	3 cut(s)	160, 203, 492
Tru1I	TTAA	2 cut(s)	249, 408
Tru9I	TTAA	2 cut(s)	249, 408
TseI	GCWGC	3 cut(s)	149, 296, 414
TspDTI	ATGAA	2 cut(s)	168, 170
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	73, 190
XceI	RCATGY	1 cut(s)	637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.