Rmu_co8340729.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8340729.1
OG0011826
Physical Location & Seq
Reverse (-)
2 .. 845
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8340729.1_g000001.1.cds

Sequence Viewer

Length: 844 bp
atgcttcaacggcttgatctgagtagcaacaacttttcggatgtcttgccaagtgagataggagcactttctcagttggagcttctcaagctctccgataatcatctttcgggggatatcccagttgcactgggaaatctcttgcatttgactgagctacaaatgggtggcaactcattctctgggggtataccagctgagttgggtgccctttcaagcctccagattggattaaatctcagttataacaatatttctggggagatacctcctcaacttggaaatcttatattactggaactgcttctactcgataacaaccatttgactggtggaattccaggatcttttgacaacctgtcaagtttacttggctgcaacttttcatacaatgacttgatagggcctattccttctctaccactctttcagagtatggatgttagcagctttgttgggaataaaagactttgcggtggccctcttggtgcttgtgaaacaccatcttcactctcttttcctccaaatgtggcaaacaaaagaacccgcttagggaagattgttgctattgttgcggcagccattggtggtgtttctcttatcttaatcgtaatcattatatatgtgatgagacgtcctgtagacaatgtagtaacttctgcgcaagaaaaaccactctcttctccagttttggatgtgtacttttcgccaaaggcaggattcacttttcaagacttggttatggcgactgaaaactttgacgagagatttgcaattggaaggggagcttctggaactgtgtataaagccgtcttgtttcacggtcatacagttgctgtcaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

281

Amino Acids

29.74

Weight (kDa)

5.3

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63930 AT5G63930
fragaria_vesca FvH4_6g01320 FvH4_6g01320
malus_domestica MD04G1235000.v1.1 MD12G1253000.v1.1
prunus_persica Prupe.6G354900_v2.0.a1 Prupe.6G354900_v2.0.a1
pyrus_communis pycom04g20870 pycom12g23210
rosa_chinensis RchiOBHm_Chr3g0448891
rosa_laevigata RLG00000025869
rosa_multiflora Rmu_co8340729.1_g000001 Rmu_sc0003116.1_g000020
rosa_rugosa Rorug02G0617000
rosa_samantha Rh3AG015200 Rh3CG013900 Rh3DG015500
rosa_wichuraiana Rw3G001130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AatII GACGTC 1 cut(s) 637
Acc16I TGCGCA 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 2 cut(s) 190, 642
AciI CCGC 3 cut(s) 474, 547, 575
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 1 cut(s) 701
AfiI CCNNNNNNNGG 3 cut(s) 278, 552, 716
AgsI TTSAA 3 cut(s) 8, 216, 731
AhdI GACNNNNNGTC 1 cut(s) 358
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 6 cut(s) 82, 91, 157, 197, 450, 788
AluI AGCT 6 cut(s) 82, 91, 157, 197, 450, 788
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 625
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 836
AoxI GGCC 2 cut(s) 404, 478
ApeKI GCWGC 3 cut(s) 375, 447, 578
ApoI RAATTY 1 cut(s) 336
ArsI GACNNNNNNTTYG 2 cut(s) 752, 784
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 404, 479
BaeGI GKGCMC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 362, 459, 590
BccI CCATC 1 cut(s) 511
BceAI ACGGC 2 cut(s) 26, 794
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 625
BfmI CTRYAG 1 cut(s) 639
BisI GCNGC 4 cut(s) 376, 448, 576, 579
BlsI GCNGC 4 cut(s) 377, 449, 577, 580
Bme1390I CCNGG 1 cut(s) 342
BmeRI GACNNNNNGTC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 404, 479
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 342
BmrI ACTGGG 2 cut(s) 116, 140
BmuI ACTGGG 2 cut(s) 116, 140
BpmI CTGGAG 2 cut(s) 206, 669
Bpu10I CCTNAGC 1 cut(s) 550
BpuEI CTTGAG 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 634
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 552, 716
Bse1I ACTGG 5 cut(s) 122, 135, 300, 334, 686
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 342
BseGI GGATG 3 cut(s) 46, 445, 700
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 278, 552, 716
BseMII CTCAG 5 cut(s) 11, 86, 144, 189, 253
BseNI ACTGG 5 cut(s) 122, 135, 300, 334, 686
BseRI GAGGAG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 3 cut(s) 362, 459, 590
BshFI GGCC 2 cut(s) 406, 480
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 278, 552, 716
BsmAI GTCTC 1 cut(s) 625
BsmBI CGTCTC 1 cut(s) 625
BsnI GGCC 2 cut(s) 406, 480
Bsp1286I GDGCHC 2 cut(s) 67, 211
Bsp143I GATC 2 cut(s) 16, 344
BspACI CCGC 3 cut(s) 474, 547, 575
BspANI GGCC 2 cut(s) 406, 480
BspCNI CTCAG 5 cut(s) 12, 85, 145, 190, 252
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 206
BsrI ACTGG 5 cut(s) 122, 135, 300, 334, 686
BssMI GATC 2 cut(s) 16, 344
BssNAI GTATAC 1 cut(s) 191
BssNI GRCGYC 1 cut(s) 634
Bst1107I GTATAC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 3 cut(s) 799, 824, 832
Bst6I CTCTTC 1 cut(s) 685
BstACI GRCGYC 1 cut(s) 634
BstDEI CTNAG 6 cut(s) 20, 72, 153, 198, 239, 550
BstF5I GGATG 3 cut(s) 46, 445, 700
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 2 cut(s) 19, 347
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 2 cut(s) 16, 344
BstMWI GCNNNNNNNGC 3 cut(s) 10, 88, 572
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 211
BstV1I GCAGC 3 cut(s) 362, 459, 590
BstX2I RGATCY 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 329
BstYI RGATCY 1 cut(s) 344
BstZ17I GTATAC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 406, 480
BtsCI GGATG 3 cut(s) 46, 445, 700
BtsIMutI CAGTG 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 836
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 404, 479
Csp6I GTAC 1 cut(s) 700
CviQI GTAC 1 cut(s) 700
DdeI CTNAG 6 cut(s) 20, 72, 153, 198, 239, 550
DpnI GATC 2 cut(s) 18, 346
DpnII GATC 2 cut(s) 16, 344
DriI GACNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 685
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 685
Eco32I GATATC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 340
EcoRV GATATC 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 625
FalI AAGNNNNNCTT 2 cut(s) 772, 804
FauI CCCGC 1 cut(s) 554
FblI GTMKAC 2 cut(s) 190, 642
Fnu4HI GCNGC 4 cut(s) 376, 448, 576, 579
FokI GGATG 3 cut(s) 53, 452, 707
Fsp4HI GCNGC 4 cut(s) 376, 448, 576, 579
FspI TGCGCA 1 cut(s) 663
GlaI GCGC 1 cut(s) 663
GluI GCNGC 4 cut(s) 376, 448, 576, 579
GsuI CTGGAG 2 cut(s) 206, 669
HaeIII GGCC 2 cut(s) 406, 480
HhaI GCGC 1 cut(s) 664
Hin1I GRCGYC 1 cut(s) 634
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HinfI GANTC 1 cut(s) 720
Hpy166II GTNNAC 4 cut(s) 191, 368, 643, 700
Hpy188I TCNGA 4 cut(s) 21, 40, 97, 432
Hpy188III TCNNGA 4 cut(s) 223, 731, 792, 841
Hpy8I GTNNAC 4 cut(s) 191, 368, 643, 700
HpyAV CCTTC 2 cut(s) 423, 774
HpyCH4III ACNGT 3 cut(s) 799, 824, 832
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 4 cut(s) 128, 145, 378, 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 88, 572
HpyF3I CTNAG 6 cut(s) 20, 72, 153, 198, 239, 550
HpySE526I ACGT 1 cut(s) 634
Hsp92I GRCGYC 1 cut(s) 634
HspAI GCGC 1 cut(s) 662
Kzo9I GATC 2 cut(s) 16, 344
LmnI GCTCC 3 cut(s) 62, 79, 785
Lsp1109I GCAGC 3 cut(s) 362, 459, 590
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 1 cut(s) 652
MalI GATC 2 cut(s) 18, 346
MboI GATC 2 cut(s) 16, 344
MboII GAAGA 3 cut(s) 498, 568, 672
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 67, 211
MluCI AATT 2 cut(s) 336, 774
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 230, 279, 282, 492, 531
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 2 cut(s) 233, 605
MspA1I CMGCKG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 774
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 10, 88, 572
NdeII GATC 2 cut(s) 16, 344
NlaIV GGNNCC 1 cut(s) 208
NsbI TGCGCA 1 cut(s) 663
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 720
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 4 cut(s) 377, 449, 577, 580
PsiI TTATAA 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 404, 479
PsrI GAACNNNNNNTAC 2 cut(s) 291, 323
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 701
RsaNI GTAC 1 cut(s) 700
SaqAI TTAA 2 cut(s) 233, 605
SatI GCNGC 4 cut(s) 376, 448, 576, 579
Sau3AI GATC 2 cut(s) 16, 344
Sau96I GGNCC 2 cut(s) 404, 479
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 2 cut(s) 67, 211
SetI ASST 9 cut(s) 84, 93, 159, 199, 271, 360, 452, 637, 790
SfcI CTRYAG 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 336, 774
SsiI CCGC 3 cut(s) 474, 547, 575
SspI AATATT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 3 cut(s) 799, 824, 832
TaiI ACGT 1 cut(s) 637
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 336, 774
TatI WGTACW 1 cut(s) 699
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 1 cut(s) 720
Tru1I TTAA 2 cut(s) 233, 605
Tru9I TTAA 2 cut(s) 233, 605
TscAI CASTG 1 cut(s) 135
TseI GCWGC 3 cut(s) 375, 447, 578
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 1 cut(s) 135
XapI RAATTY 1 cut(s) 336
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XmiI GTMKAC 2 cut(s) 190, 642
XmnI GAANNNNTTC 1 cut(s) 303
ZraI GACGTC 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.