Rorug02G0617000
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011826
Physical Location & Seq
Reverse (-)
73523200 .. 73524588
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0617000.1

Sequence Viewer

Length: 816 bp
ATGCAAAACGAAGATTACTCCGACCAGGGTTTGGTCTGTCCCAGCTTCAACAGCTACGCCTCGGCCACCACAGCCGACACCGCAGCCAAGGTTTGCCGGGAATTCAGCAGCCTCGGATTAGTGGATGAGAACAAAGAGTTCGAGTATGAAGGAGGAGAGAAACAAGACGATGACTTCGAGTTCGTGTCGTTTCAGAAATCTGCCGACGAGGTTTTCTTCGGCGACAACACTCGGATCGGTCCGGTTTTCCCCGTCTTCAACCGCGACCTTATAAGTCAACGGGATCTAAACGACACCGACGACGTCGACGCCGTGCCGTCGTCGTCCTCAGCGTCATCAGACGTGGACGAGCTGGAGAACGTTCCGGCGGGTAGCTACTGCGTTTGGATGCCGAAAACGACGCCGGCCTCGTCTCCTTCCCATTGCAAGAAGAGCAAGTCAACCGGAACGTCGTCGTCTCGGCGGTGGAGGCTGAGGGACTTGCTGCGGCGGAGCAACAGCGAAGGCGGGAAGGACGCCTTCGTGCTGCTGACGCCTTCCCTGACGTCATCGTCGAGCTCCAAGAAGCAGGTGGCTGCTAACGATCATCATCATCATCCTAATGAGAAAATGGTGGTGACGAAGGGGAAGAAGAGCTTTAATGGGTCGAGGCCGAAAGGCCCGAACGCGGTGTCGATGGCGCACGAGCTGTTCTACGCGAAGAGTAAAGAGAAAGATGGGTATAATAAGAGACAGTCGTATCTTCCTTACAGGAAAGACCTGGTGGGGTTCTTTGCTAGTGTGAACGCCATGGGAAGGACTTTCCCTACTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

271

Amino Acids

30.01

Weight (kDa)

6.32

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 68 - 249 4.8e-24 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63930 AT5G63930
fragaria_vesca FvH4_6g01320 FvH4_6g01320
malus_domestica MD04G1235000.v1.1 MD12G1253000.v1.1
prunus_persica Prupe.6G354900_v2.0.a1 Prupe.6G354900_v2.0.a1
pyrus_communis pycom04g20870 pycom12g23210
rosa_chinensis RchiOBHm_Chr3g0448891
rosa_laevigata RLG00000025869
rosa_multiflora Rmu_co8340729.1_g000001 Rmu_sc0003116.1_g000020
rosa_rugosa Rorug02G0617000
rosa_samantha Rh3AG015200 Rh3CG013900 Rh3DG015500
rosa_wichuraiana Rw3G001130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AarI CACCTGC 1 cut(s) 559
AasI GACNNNNNNGTC 1 cut(s) 550
AatII GACGTC 2 cut(s) 306, 548
Acc36I ACCTGC 1 cut(s) 559
AccB7I CCANNNNNTGG 1 cut(s) 31
AccI GTMKAC 1 cut(s) 306
AccII CGCG 3 cut(s) 264, 668, 698
AciI CCGC 8 cut(s) 81, 262, 368, 463, 487, 490, 507, 668
AclI AACGTT 1 cut(s) 360
AclWI GGATC 2 cut(s) 242, 291
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 101
AcyI GRCGYC 6 cut(s) 303, 309, 401, 516, 533, 545
AfiI CCNNNNNNNGG 3 cut(s) 31, 667, 795
AgsI TTSAA 2 cut(s) 49, 259
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 2 cut(s) 24, 759
AluBI AGCT 7 cut(s) 45, 54, 352, 375, 558, 636, 688
AluI AGCT 7 cut(s) 45, 54, 352, 375, 558, 636, 688
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 3 cut(s) 417, 462, 724
AlwI GGATC 2 cut(s) 242, 291
AoxI GGCC 4 cut(s) 63, 405, 650, 658
ApeKI GCWGC 5 cut(s) 83, 108, 484, 526, 575
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 6 cut(s) 158, 164, 190, 196, 656, 688
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 2 cut(s) 239, 659
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 722, 755
BanII GRGCYC 1 cut(s) 560
BauI CACGAG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 560
BbvCI CCTCAGC 2 cut(s) 328, 473
BbvI GCAGC 5 cut(s) 95, 120, 471, 513, 562
BccI CCATC 2 cut(s) 670, 710
BceAI ACGGC 2 cut(s) 296, 301
BciT130I CCWGG 2 cut(s) 26, 761
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 3 cut(s) 417, 462, 724
BfaI CTAG 1 cut(s) 777
BfuAI ACCTGC 1 cut(s) 559
BisI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
BlsI GCNGC 6 cut(s) 85, 110, 486, 489, 528, 577
Bme1390I CCNGG 3 cut(s) 26, 98, 761
Bme18I GGWCC 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 239, 659
BmrFI CCNGG 3 cut(s) 26, 98, 761
BmsI GCATC 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 2 cut(s) 328, 473
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 6 cut(s) 303, 309, 401, 516, 533, 545
BsaJI CCNNGG 5 cut(s) 25, 60, 87, 112, 789
BsaWI WCCGGW 2 cut(s) 241, 443
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 667, 795
Bse118I RCCGGY 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 2 cut(s) 26, 761
BseDI CCNNGG 5 cut(s) 25, 60, 87, 112, 789
BseGI GGATG 3 cut(s) 130, 393, 595
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 3 cut(s) 31, 667, 795
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 342, 464
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 5 cut(s) 95, 120, 471, 513, 562
BseYI CCCAGC 1 cut(s) 41
Bsh1236I CGCG 3 cut(s) 264, 668, 698
BshFI GGCC 4 cut(s) 65, 407, 652, 660
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 5 cut(s) 97, 242, 365, 404, 444
BslFI GGGAC 2 cut(s) 24, 491
BslI CCNNNNNNNGG 3 cut(s) 31, 667, 795
BsmAI GTCTC 3 cut(s) 417, 462, 724
BsmBI CGTCTC 2 cut(s) 417, 462
BsmFI GGGAC 2 cut(s) 24, 491
BsnI GGCC 4 cut(s) 65, 407, 652, 660
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 3 cut(s) 234, 283, 583
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 8 cut(s) 81, 262, 368, 463, 487, 490, 507, 668
BspANI GGCC 4 cut(s) 65, 407, 652, 660
BspCNI CTCAG 2 cut(s) 341, 465
BspFNI CGCG 3 cut(s) 264, 668, 698
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 2 cut(s) 242, 291
BspQI GCTCTTC 2 cut(s) 425, 626
BsrDI GCAATG 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 403
BssECI CCNNGG 5 cut(s) 25, 60, 87, 112, 789
BssMI GATC 3 cut(s) 234, 283, 583
BssNI GRCGYC 6 cut(s) 303, 309, 401, 516, 533, 545
BssSI CACGAG 1 cut(s) 683
BssT1I CCWWGG 2 cut(s) 87, 789
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 2 cut(s) 26, 761
Bst4CI ACNGT 1 cut(s) 735
Bst6I CTCTTC 3 cut(s) 425, 626, 695
BstACI GRCGYC 6 cut(s) 303, 309, 401, 516, 533, 545
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 328, 473
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 130, 393, 595
BstFNI CGCG 3 cut(s) 264, 668, 698
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 3 cut(s) 237, 286, 586
BstMAI GTCTC 3 cut(s) 417, 462, 724
BstMBI GATC 3 cut(s) 234, 283, 583
BstMWI GCNNNNNNNGC 6 cut(s) 51, 71, 80, 432, 469, 532
BstNI CCWGG 2 cut(s) 26, 761
BstSCI CCNGG 3 cut(s) 24, 96, 759
BstUI CGCG 3 cut(s) 264, 668, 698
BstV1I GCAGC 5 cut(s) 95, 120, 471, 513, 562
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 4 cut(s) 65, 407, 652, 660
BtgI CCRYGG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 3 cut(s) 130, 393, 595
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 405
CfoI GCGC 1 cut(s) 682
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 239, 659
CpoI CGGWCCG 1 cut(s) 239
CseI GACGC 5 cut(s) 317, 321, 409, 524, 541
CsiI ACCWGGT 1 cut(s) 759
CspI CGGWCCG 1 cut(s) 239
CviAII CATG 1 cut(s) 790
DdeI CTNAG 2 cut(s) 328, 473
DpnI GATC 3 cut(s) 236, 285, 585
DpnII GATC 3 cut(s) 234, 283, 583
DrdI GACNNNNNNGTC 1 cut(s) 550
DseDI GACNNNNNNGTC 1 cut(s) 550
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 3 cut(s) 425, 626, 695
EarI CTCTTC 3 cut(s) 425, 626, 695
EciI GGCGGA 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 558
Eco130I CCWWGG 2 cut(s) 87, 789
Eco24I GRGCYC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 24, 759
EcoT14I CCWWGG 2 cut(s) 87, 789
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 2 cut(s) 87, 789
Esp3I CGTCTC 2 cut(s) 417, 462
FaeI CATG 1 cut(s) 793
FaiI YATR 4 cut(s) 147, 272, 723, 791
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 620, 652
FaqI GGGAC 2 cut(s) 24, 491
FatI CATG 1 cut(s) 789
FauI CCCGC 2 cut(s) 361, 500
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
FokI GGATG 3 cut(s) 137, 400, 582
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
FspBI CTAG 1 cut(s) 777
GlaI GCGC 1 cut(s) 681
GluI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
GsaI CCCAGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 4 cut(s) 65, 407, 652, 660
HapII CCGG 5 cut(s) 97, 242, 365, 404, 444
HgaI GACGC 5 cut(s) 317, 321, 409, 524, 541
HhaI GCGC 1 cut(s) 682
Hin1I GRCGYC 6 cut(s) 303, 309, 401, 516, 533, 545
Hin1II CATG 1 cut(s) 793
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HincII GTYRAC 3 cut(s) 278, 307, 441
HindII GTYRAC 3 cut(s) 278, 307, 441
HpaII CCGG 5 cut(s) 97, 242, 365, 404, 444
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 5 cut(s) 278, 307, 346, 441, 784
Hpy188I TCNGA 5 cut(s) 22, 116, 195, 234, 340
Hpy8I GTNNAC 5 cut(s) 278, 307, 346, 441, 784
HpyAV CCTTC 8 cut(s) 143, 426, 497, 505, 529, 546, 616, 789
HpyCH4III ACNGT 1 cut(s) 735
HpyCH4IV ACGT 5 cut(s) 303, 342, 360, 449, 545
HpyCH4V TGCA 2 cut(s) 4, 426
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 71, 80, 432, 469, 532
HpyF3I CTNAG 2 cut(s) 328, 473
HpySE526I ACGT 5 cut(s) 303, 342, 360, 449, 545
Hsp92I GRCGYC 6 cut(s) 303, 309, 401, 516, 533, 545
Hsp92II CATG 1 cut(s) 793
HspAI GCGC 1 cut(s) 680
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 234, 283, 583
LguI GCTCTTC 2 cut(s) 425, 626
LmnI GCTCC 2 cut(s) 492, 563
Lsp1109I GCAGC 5 cut(s) 95, 120, 471, 513, 562
LweI GCATC 1 cut(s) 378
MabI ACCWGGT 1 cut(s) 759
MaeI CTAG 1 cut(s) 777
MaeII ACGT 5 cut(s) 303, 342, 360, 449, 545
MaeIII GTNAC 1 cut(s) 616
MalI GATC 3 cut(s) 236, 285, 585
MboI GATC 3 cut(s) 234, 283, 583
MboII GAAGA 8 cut(s) 23, 208, 247, 442, 640, 643, 712, 734
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 9 cut(s) 70, 122, 146, 202, 337, 418, 462, 468, 642
MroNI GCCGGC 1 cut(s) 403
MseI TTAA 2 cut(s) 639, 814
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 5 cut(s) 97, 242, 365, 404, 444
MspR9I CCNGG 3 cut(s) 26, 98, 761
MvaI CCWGG 2 cut(s) 26, 761
MvnI CGCG 3 cut(s) 264, 668, 698
MwoI GCNNNNNNNGC 6 cut(s) 51, 71, 80, 432, 469, 532
NaeI GCCGGC 1 cut(s) 405
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 789
NdeII GATC 3 cut(s) 234, 283, 583
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 1 cut(s) 793
NmeAIII GCCGAG 2 cut(s) 41, 439
NmuCI GTSAC 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 559
PciSI GCTCTTC 2 cut(s) 425, 626
PcsI WCGNNNNNNNCGW 6 cut(s) 174, 297, 309, 329, 407, 551
PdiI GCCGGC 1 cut(s) 405
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 6 cut(s) 85, 110, 486, 489, 528, 577
PsiI TTATAA 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 560
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 24, 759
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 2 cut(s) 24, 759
PspPI GGNCC 2 cut(s) 239, 659
PsuI RGATCY 1 cut(s) 283
PsyI GACNNNGTC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 600
Rsr2I CGGWCCG 1 cut(s) 239
RsrII CGGWCCG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 560
SalI GTCGAC 1 cut(s) 305
SapI GCTCTTC 2 cut(s) 425, 626
SaqAI TTAA 2 cut(s) 639, 814
SatI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
Sau3AI GATC 3 cut(s) 234, 283, 583
Sau96I GGNCC 2 cut(s) 239, 659
ScrFI CCNGG 3 cut(s) 26, 98, 761
SduI GDGCHC 1 cut(s) 560
SexAI ACCWGGT 1 cut(s) 759
SfaNI GCATC 1 cut(s) 378
SgrDI CGTCGACG 1 cut(s) 305
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 1 cut(s) 101
SsiI CCGC 8 cut(s) 81, 262, 368, 463, 487, 490, 507, 668
SspMI CTAG 1 cut(s) 777
SstI GAGCTC 1 cut(s) 560
StyD4I CCNGG 3 cut(s) 24, 96, 759
StyI CCWWGG 2 cut(s) 87, 789
TaaI ACNGT 1 cut(s) 735
TaiI ACGT 5 cut(s) 306, 345, 363, 452, 548
TaqI TCGA 6 cut(s) 141, 177, 306, 554, 647, 674
TaqII GACCGA 1 cut(s) 227
TasI AATT 1 cut(s) 101
TauI GCSGC 1 cut(s) 490
Tru1I TTAA 2 cut(s) 639, 814
Tru9I TTAA 2 cut(s) 639, 814
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 5 cut(s) 83, 108, 484, 526, 575
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 1 cut(s) 162
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 777
ZraI GACGTC 2 cut(s) 304, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.