Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354903.1

Orthogroup ID

OG0007320

Physical Location & Seq

Genomic Coordinates Forward (+)

185 .. 1057

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354903.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 527 bp

atgagtcgggtcgaaacgtcaaaacggagaggagagaaggcgaagccaaaccgatccgtcactctcccagagagtctcaacacagtgatcggaaaaacaaaaatggacgacgaattggtggaattgcagaagcaattcgagtcggcacagcaagcgaaatcgagcatcagattgtccgatcgaaacgtcgtcgaattggtccaaaagcttcacgagctccacatcatcgacttcgacctcctccacaccgtctccggcaaagaatacatcactccggatcaattgaggcatgaaatactggtggaggtcaagaggttgggccgtatatcactgattgaccttgcagatgctattggggttgatttgtaccatgtcgagaagcaagctcaacatgtggtttctgatgatccggggcttatgttgattcagggggaaataatatcacagtcctattgggattccgtcgctgaagaaatcaatgagaggcttcaagaatgtagccaagttgctttggcagaacttgccgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E3_UFM1_ligase

Protein Analysis

176

Amino Acids

19.89

Weight (kDa)

5.16

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46220 AT3G46220 AT3G46220 AT3G46220
fragaria_vesca	FvH4_3g34630 FvH4_3g34630 FvH4_3g34630 FvH4_3g34630 FvH4_3g34630
malus_domestica	MD03G1103200.v1.1 MD11G1116800.v1.1
prunus_persica	Prupe.6G087200_v2.0.a1 Prupe.6G087200_v2.0.a1
pyrus_communis	pycom03g08380 pycom11g09820
rosa_chinensis	RchiOBHm_Chr5g0062341
rosa_laevigata	RLG00000035551
rosa_multiflora	Rmu_co8354903.1_g000001 Rmu_sc0006295.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018340
rosa_rugosa	Rorug05G0348800
rosa_samantha	Rh5BG422200 Rh5CG446200 Rh5DG437200
rosa_wichuraiana	Rw5G038490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	1 cut(s)	525
AclWI	GGATC	3 cut(s)	48, 285, 401
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	491
AluBI	AGCT	3 cut(s)	208, 217, 386
AluI	AGCT	3 cut(s)	208, 217, 386
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	80, 256
AlwI	GGATC	3 cut(s)	48, 285, 401
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	199, 319
AsuC2I	CCSGG	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	219
BceAI	ACGGC	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	80, 256
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	199, 319
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	174, 337
BpuMI	CCSGG	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse1I	ACTGG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	45, 230
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	255, 275, 410
BsmAI	GTCTC	2 cut(s)	80, 256
BsmBI	CGTCTC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	53, 87, 178, 277, 406
BspACI	CCGC	1 cut(s)	525
BspANI	GGCC	1 cut(s)	321
BspEI	TCCGGA	1 cut(s)	274
BspPI	GGATC	3 cut(s)	48, 285, 401
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	5 cut(s)	53, 87, 178, 277, 406
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst4CI	ACNGT	3 cut(s)	85, 250, 447
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	153, 384
BstKTI	GATC	5 cut(s)	56, 90, 181, 280, 409
BstMAI	GTCTC	2 cut(s)	80, 256
BstMBI	GATC	5 cut(s)	53, 87, 178, 277, 406
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 214, 521
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	90, 329
Cac8I	GCNNGC	2 cut(s)	153, 384
Cfr13I	GGNCC	2 cut(s)	199, 319
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	3 cut(s)	290, 371, 392
CviJI	RGCY	8 cut(s)	46, 208, 217, 321, 386, 415, 487, 501
CviKI_1	RGCY	8 cut(s)	46, 208, 217, 321, 386, 415, 487, 501
CviQI	GTAC	1 cut(s)	367
DpnI	GATC	5 cut(s)	55, 89, 180, 279, 408
DpnII	GATC	5 cut(s)	53, 87, 178, 277, 406
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	3 cut(s)	293, 374, 395
FaiI	YATR	5 cut(s)	291, 326, 372, 393, 419
FatI	CATG	3 cut(s)	289, 370, 391
Fnu4HI	GCNGC	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	3 cut(s)	255, 275, 410
Hin1II	CATG	3 cut(s)	293, 374, 395
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	5 cut(s)	4, 73, 140, 424, 458
HpaII	CCGG	3 cut(s)	255, 275, 410
Hpy188I	TCNGA	4 cut(s)	92, 170, 178, 403
Hpy188III	TCNNGA	5 cut(s)	212, 275, 310, 376, 491
Hpy99I	CGWCG	4 cut(s)	113, 191, 194, 467
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	3 cut(s)	85, 250, 447
HpyCH4IV	ACGT	2 cut(s)	17, 186
HpyCH4V	TGCA	2 cut(s)	127, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 214, 521
HpySE526I	ACGT	2 cut(s)	17, 186
Hsp92II	CATG	3 cut(s)	293, 374, 395
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	53, 87, 178, 277, 406
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	6 cut(s)	81, 268, 284, 288, 413, 423
LweI	GCATC	2 cut(s)	174, 337
MaeII	ACGT	2 cut(s)	17, 186
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	5 cut(s)	55, 89, 180, 279, 408
MboI	GATC	5 cut(s)	53, 87, 178, 277, 406
MboII	GAAGA	1 cut(s)	482
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	5 cut(s)	113, 122, 134, 194, 281
MlyI	GAGTC	3 cut(s)	13, 82, 149
MnlI	CCTC	7 cut(s)	23, 248, 251, 279, 298, 306, 477
MroI	TCCGGA	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	134
MspI	CCGG	3 cut(s)	255, 275, 410
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	152, 214, 521
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	5 cut(s)	53, 87, 178, 277, 406
NlaIII	CATG	3 cut(s)	293, 374, 395
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	395
PciI	ACATGT	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	424, 458
PkrI	GCNGC	1 cut(s)	526
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	3 cut(s)	12, 81, 148
PpsI	GAGTC	3 cut(s)	12, 81, 148
PscI	ACATGT	1 cut(s)	391
Psp124BI	GAGCTC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	199, 319
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	5 cut(s)	53, 87, 178, 277, 406
Sau96I	GGNCC	2 cut(s)	199, 319
SchI	GAGTC	3 cut(s)	13, 82, 149
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	9 cut(s)	20, 189, 210, 219, 240, 309, 317, 342, 388
SfaNI	GCATC	2 cut(s)	174, 337
SinI	GGWCC	1 cut(s)	199
Sse9I	AATT	5 cut(s)	113, 122, 134, 194, 281
SsiI	CCGC	1 cut(s)	525
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	3 cut(s)	85, 250, 447
TaiI	ACGT	2 cut(s)	20, 189
TaqI	TCGA	8 cut(s)	12, 138, 161, 181, 192, 228, 234, 375
TasI	AATT	5 cut(s)	113, 122, 134, 194, 281
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	2 cut(s)	424, 458
TscAI	CASTG	2 cut(s)	90, 336
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	3 cut(s)	40, 46, 451
TspRI	CASTG	2 cut(s)	90, 336
VpaK11BI	GGWCC	1 cut(s)	199
XceI	RCATGY	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.