Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007320

Physical Location & Seq

Genomic Coordinates Reverse (-)

43237069 .. 43237641

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACGGTCACGATCCCGTCGCAGGACCTCTCCGTCTGAACCCACATCACCTGGCCGAACGCCTCCTCGGACAGATCCGAGAACTCTTTGAAGCCGTGGACTGCCGTCGGATCCAGAGCTTGGTGCTCGACGGCTCTACATGTACTCCTTTCGCACCGGAGAAGATGAAGGGTGAGGAGCAGTGGCGCTGGAGCTTGCGGTGTGCGTGTGGGGACCGAGATCGACGTATGGTCGTGATTGGCTCGGGTTTCGGTCTGGATTCGACTGGTGATGGTGGTGCTGTGAGATGGTGGCCGGAAGTGGTTGTCTTCGATGATGGCAGAGGAAGAGAAGAAGAAGAGAGGTTGAGGGAGAGAGAGAGAGACCGTGGTCTGGTCCTCTGCTGTGCTCGGAGACTTGAACTTGTGGCGGCTATCTTACTCGGAGATTTGGATTGCTTGGAAGAGCCTTGCAGCGGCGGCGGAGGAGGACGAAGAGACTTGAAGGCTGGGTTCGAATGTTCGACTAAGGGATTGAATTTGAAATATGGAAGGGGATTGAATGATTTGTATGGGATTGAAGGCTGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E3_UFM1_ligase

Protein Analysis

190

Amino Acids

21.17

Weight (kDa)

5.37

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46220 AT3G46220 AT3G46220 AT3G46220
fragaria_vesca	FvH4_3g34630 FvH4_3g34630 FvH4_3g34630 FvH4_3g34630 FvH4_3g34630
malus_domestica	MD03G1103200.v1.1 MD11G1116800.v1.1
prunus_persica	Prupe.6G087200_v2.0.a1 Prupe.6G087200_v2.0.a1
pyrus_communis	pycom03g08380 pycom11g09820
rosa_chinensis	RchiOBHm_Chr5g0062341
rosa_laevigata	RLG00000035551
rosa_multiflora	Rmu_co8354903.1_g000001 Rmu_sc0006295.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018340
rosa_rugosa	Rorug05G0348800
rosa_samantha	Rh5BG422200 Rh5CG446200 Rh5DG437200
rosa_wichuraiana	Rw5G038490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	33
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	5 cut(s)	199, 410, 456, 459, 462
AclWI	GGATC	4 cut(s)	8, 70, 106, 119
AcoI	YGGCCR	2 cut(s)	54, 293
AcsI	RAATTY	1 cut(s)	517
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	4 cut(s)	23, 121, 373, 455
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	7 cut(s)	92, 401, 484, 517, 523, 541, 560
AhdI	GACNNNNNGTC	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	120, 195
AluI	AGCT	2 cut(s)	120, 195
Alw21I	GWGCWC	2 cut(s)	129, 391
Alw26I	GTCTC	3 cut(s)	357, 388, 471
AlwI	GGATC	4 cut(s)	8, 70, 106, 119
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	2 cut(s)	54, 293
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	26, 214, 376
AsuHPI	GGTGA	3 cut(s)	41, 185, 281
AsuII	TTCGAA	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	3 cut(s)	26, 214, 376
BamHI	GGATCC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	301
Bbv12I	GWGCWC	2 cut(s)	129, 391
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	3 cut(s)	266, 282, 311
BceAI	ACGGC	3 cut(s)	80, 90, 148
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	3 cut(s)	357, 388, 471
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	4 cut(s)	411, 454, 457, 460
BlsI	GCNGC	4 cut(s)	412, 455, 458, 461
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	3 cut(s)	26, 214, 376
BmeRI	GACNNNNNGTC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	26, 214, 376
BmiI	GGNNCC	2 cut(s)	113, 215
BmrFI	CCNGG	1 cut(s)	53
BoxI	GACNNNNGTC	2 cut(s)	105, 369
BpiI	GAAGAC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	211
Bpu14I	TTCGAA	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	67, 96, 367
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 121, 373, 455
Bse1I	ACTGG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	67, 96, 367
BseLI	CCNNNNNNNGG	4 cut(s)	23, 121, 373, 455
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	3 cut(s)	56, 191, 480
BseXI	GCAGC	1 cut(s)	465
BseYI	CCCAGC	2 cut(s)	488, 564
BshFI	GGCC	2 cut(s)	56, 295
BsiHKAI	GWGCWC	2 cut(s)	129, 391
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	158, 296
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	4 cut(s)	23, 121, 373, 455
BsmAI	GTCTC	3 cut(s)	357, 388, 471
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	56, 295
Bso31I	GGTCTC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	129, 391
Bsp143I	GATC	4 cut(s)	13, 75, 111, 220
BspACI	CCGC	5 cut(s)	199, 410, 456, 459, 462
BspANI	GGCC	2 cut(s)	56, 295
BspLI	GGNNCC	2 cut(s)	113, 215
BspPI	GGATC	4 cut(s)	8, 70, 106, 119
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	67, 96, 367
BssMI	GATC	4 cut(s)	13, 75, 111, 220
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	8, 368
Bst6I	CTCTTC	4 cut(s)	322, 333, 438, 469
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	507
BstDSI	CCRYGG	2 cut(s)	96, 367
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	4 cut(s)	16, 78, 114, 223
BstMAI	GTCTC	3 cut(s)	357, 388, 471
BstMBI	GATC	4 cut(s)	13, 75, 111, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	144
BstPAI	GACNNNNGTC	2 cut(s)	105, 369
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	75, 111
BstYI	RGATCY	2 cut(s)	75, 111
BsuRI	GGCC	2 cut(s)	56, 295
BtgI	CCRYGG	2 cut(s)	96, 367
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	26, 214, 376
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	141
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	4 cut(s)	15, 77, 113, 222
DpnII	GATC	4 cut(s)	13, 75, 111, 220
DrdI	GACNNNNNNGTC	1 cut(s)	33
DriI	GACNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	33
EaeI	YGGCCR	2 cut(s)	54, 293
Eam1104I	CTCTTC	4 cut(s)	322, 333, 438, 469
Eam1105I	GACNNNNNGTC	1 cut(s)	230
EarI	CTCTTC	4 cut(s)	322, 333, 438, 469
EciI	GGCGGA	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	3 cut(s)	26, 214, 376
Eco88I	CYCGRG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	144
FaiI	YATR	5 cut(s)	142, 230, 528, 552, 571
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	140
Fnu4HI	GCNGC	4 cut(s)	411, 454, 457, 460
Fsp4HI	GCNGC	4 cut(s)	411, 454, 457, 460
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	4 cut(s)	411, 454, 457, 460
GsaI	CCCAGC	2 cut(s)	492, 568
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	56, 295
HapII	CCGG	2 cut(s)	158, 296
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	2 cut(s)	158, 296
HphI	GGTGA	3 cut(s)	41, 185, 281
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	6 cut(s)	39, 71, 80, 111, 393, 425
Hpy188III	TCNNGA	4 cut(s)	11, 115, 235, 257
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	4 cut(s)	23, 111, 134, 228
HpyAV	CCTTC	4 cut(s)	163, 478, 525, 554
HpyCH4III	ACNGT	2 cut(s)	8, 368
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	144
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	13, 75, 111, 220
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	178, 192
Lsp1109I	GCAGC	1 cut(s)	465
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	4 cut(s)	15, 77, 113, 222
MboI	GATC	4 cut(s)	13, 75, 111, 220
MboII	GAAGA	8 cut(s)	175, 301, 339, 344, 347, 350, 455, 486
MflI	RGATCY	2 cut(s)	75, 111
MhlI	GDGCHC	2 cut(s)	129, 391
MluCI	AATT	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	2 cut(s)	158, 296
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	459
NdeII	GATC	4 cut(s)	13, 75, 111, 220
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	2 cut(s)	113, 215
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	495
PciI	ACATGT	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	412, 455, 458, 461
PpuMI	RGGWCCY	1 cut(s)	26
PscI	ACATGT	1 cut(s)	140
PshAI	GACNNNNGTC	2 cut(s)	105, 369
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	2 cut(s)	488, 564
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	113, 215
PspPI	GGNCC	3 cut(s)	26, 214, 376
PspPPI	RGGWCCY	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	75, 111
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	438
SatI	GCNGC	4 cut(s)	411, 454, 457, 460
Sau3AI	GATC	4 cut(s)	13, 75, 111, 220
Sau96I	GGNCC	3 cut(s)	26, 214, 376
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	129, 391
SetI	ASST	6 cut(s)	31, 54, 122, 197, 229, 347
SfuI	TTCGAA	1 cut(s)	495
SinI	GGWCC	3 cut(s)	26, 214, 376
Sse9I	AATT	1 cut(s)	517
SsiI	CCGC	5 cut(s)	199, 410, 456, 459, 462
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	8, 368
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	6 cut(s)	129, 223, 263, 312, 495, 503
TaqII	GACCGA	2 cut(s)	231, 242
TasI	AATT	1 cut(s)	517
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	3 cut(s)	413, 459, 462
TfiI	GAWTC	1 cut(s)	260
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	3 cut(s)	26, 214, 376
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.