Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8370739.1

Orthogroup ID

OG0005666

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1122

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8370739.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 496 bp

ggaagatctttgccggaaagtcttcgtatgattctgattcgccttcttctttaactgttgctgcttcaaagaaagttcttgttcctggaggtccgaccgatggctctccccctttgacagagcaattggaagctcccagcacagattcagaggatcctcaggtgcttgaggatgtagacagtgtaactatggaagatgagattgttgaagatgaagtaatttcttcgttagacgtgggcagtgttgatgatgataaaaccaaggttgaggacacacctagtcctttaaaagggacagcaagtactgctccaaagtcaattccaccacctggcactgggaaaaaaatatatgaaatagatccacttttgaagggcttccgtgatcatttggattaccgatatggacaatacaaaaagttgcgtgcggaaattgacaagtatgaaggtggtttggaggtgttttctcgtggctatgagaagtttgggttcacacgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003824 GO:0003844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010021 GO:0010033 GO:0016740 GO:0016757 GO:0016758 GO:0019725 GO:0033500 GO:0034284 GO:0034285 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050896 GO:0051716 GO:0055082 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071310 GO:0071322 GO:0071324 GO:0071326 GO:0071329 GO:0071331 GO:0071332 GO:0071333 GO:0071478 GO:0071482 GO:0071704 GO:0104004 GO:1901135 GO:1901137 GO:1901576 GO:1901700 GO:1901701 GO:2000896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase Alpha-amylase_C CBM_48

Protein Analysis

164

Amino Acids

17.81

Weight (kDa)

4.52

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36390 AT5G03650
fragaria_vesca	FvH4_6g18120 FvH4_6g18120 FvH4_6g18120 FvH4_6g18120 FvH4_6g18120
malus_domestica	MD12G1020600.v1.1 MD14G1017700.v1.1
prunus_persica	Prupe.7G115400_v2.0.a1 Prupe.7G115400_v2.0.a1
pyrus_communis	pycom12g01930 pycom14g01610
rosa_chinensis	RchiOBHm_Chr3g0472421
rosa_laevigata	RLG00000024081
rosa_multiflora	Rmu_co8370739.1_g000001 Rmu_sc0001096.1_g000015
rosa_roxburghii	Rroxscaffold_6G00408930
rosa_rugosa	Rorug03G0124700 Rorug03G0124700 Rorug03G0124800 Rorug03G0124900
rosa_samantha	Rh3AG177100 Rh3BG203100 Rh3CG193400 Rh3CG200600 Rh3DG172000
rosa_wichuraiana	Rw3G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	176
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	3 cut(s)	148, 161, 352
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	4 cut(s)	100, 289, 328, 334
AgsI	TTSAA	3 cut(s)	68, 208, 369
AjiI	CACGTC	1 cut(s)	234
AjnI	CCWGG	2 cut(s)	84, 327
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AlwI	GGATC	3 cut(s)	148, 161, 352
ApeKI	GCWGC	1 cut(s)	61
Asp700I	GAANNNNTTC	2 cut(s)	21, 373
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	86, 329
BclI	TGATCA	1 cut(s)	381
BfaI	CTAG	1 cut(s)	278
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
BmcAI	AGTACT	1 cut(s)	303
Bme1390I	CCNGG	2 cut(s)	86, 329
Bme18I	GGWCC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	86, 329
BmrI	ACTGGG	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 289, 328, 334
Bse1I	ACTGG	1 cut(s)	339
Bse21I	CCTNAGG	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	86, 329
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	4 cut(s)	100, 289, 328, 334
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	4 cut(s)	100, 289, 328, 334
BsmFI	GGGAC	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	5, 153, 357, 381
BspACI	CCGC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	3 cut(s)	148, 161, 352
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	4 cut(s)	5, 153, 357, 381
BssSI	CACGAG	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	86, 329
Bst4CI	ACNGT	2 cut(s)	57, 181
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	158
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	4 cut(s)	8, 156, 360, 384
BstMBI	GATC	4 cut(s)	5, 153, 357, 381
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	2 cut(s)	86, 329
BstSCI	CCNGG	2 cut(s)	84, 327
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	3 cut(s)	5, 153, 357
BstYI	RGATCY	3 cut(s)	5, 153, 357
Bsu36I	CCTNAGG	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	186, 246, 332
Cac8I	GCNNGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	302
CviJI	RGCY	4 cut(s)	104, 133, 374, 470
CviKI_1	RGCY	4 cut(s)	104, 133, 374, 470
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	4 cut(s)	7, 155, 359, 383
DpnII	GATC	4 cut(s)	5, 153, 357, 381
DraI	TTTAAA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	84, 327
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaiI	YATR	7 cut(s)	29, 190, 348, 350, 401, 440, 473
FaqI	GGGAC	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	107
HapII	CCGG	1 cut(s)	14
HinfI	GANTC	3 cut(s)	31, 37, 145
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	2 cut(s)	177, 488
Hpy188I	TCNGA	3 cut(s)	36, 95, 150
Hpy8I	GTNNAC	2 cut(s)	177, 488
HpyAV	CCTTC	3 cut(s)	53, 363, 436
HpyCH4III	ACNGT	2 cut(s)	57, 181
HpyCH4IV	ACGT	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	5, 153, 357, 381
LmnI	GCTCC	2 cut(s)	138, 312
LpnPI	CCDG	8 cut(s)	27, 71, 98, 145, 150, 314, 320, 341
Lsp1109I	GCAGC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	4 cut(s)	7, 155, 359, 383
MboI	GATC	4 cut(s)	5, 153, 357, 381
MboII	GAAGA	6 cut(s)	14, 15, 38, 205, 215, 220
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	3 cut(s)	5, 153, 357
MluCI	AATT	4 cut(s)	124, 218, 317, 428
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	6 cut(s)	82, 144, 162, 167, 261, 447
MroXI	GAANNNNTTC	2 cut(s)	21, 373
MseI	TTAA	2 cut(s)	52, 286
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	86, 329
MunI	CAATTG	1 cut(s)	124
MvaI	CCWGG	2 cut(s)	86, 329
MwoI	GCNNNNNNNGC	1 cut(s)	304
NdeII	GATC	4 cut(s)	5, 153, 357, 381
NlaIV	GGNNCC	1 cut(s)	155
PdmI	GAANNNNTTC	2 cut(s)	21, 373
PfeI	GAWTC	3 cut(s)	31, 37, 145
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	84, 327
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	84, 327
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	3 cut(s)	5, 153, 357
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	52, 286
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	4 cut(s)	5, 153, 357, 381
Sau96I	GGNCC	1 cut(s)	91
ScaI	AGTACT	1 cut(s)	303
ScrFI	CCNGG	2 cut(s)	86, 329
SetI	ASST	9 cut(s)	93, 135, 164, 236, 266, 279, 330, 447, 458
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	4 cut(s)	124, 218, 317, 428
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	84, 327
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	57, 181
TaiI	ACGT	1 cut(s)	236
TaqII	GACCGA	1 cut(s)	112
TasI	AATT	4 cut(s)	124, 218, 317, 428
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	3 cut(s)	31, 37, 145
Tru1I	TTAA	2 cut(s)	52, 286
Tru9I	TTAA	2 cut(s)	52, 286
TscAI	CASTG	3 cut(s)	186, 246, 339
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	227, 365, 455
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	3 cut(s)	186, 246, 339
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	91
XagI	CCTNNNNNAGG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	176
XmnI	GAANNNNTTC	2 cut(s)	21, 373
XspI	CTAG	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.