Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005666

Physical Location & Seq

Genomic Coordinates Reverse (-)

10060968 .. 10064517

Gene Structure 3550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0124700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTGGCGGATAACAAGAAACCCGACATTTCCTTCGCCGGAACTTTTGCCAGCAGCGCCTTCTCCGCTTGCTTTGCTGAGATTTGTACTATTCCTTTGGACACTGCTAAAGTTAGGCTTCAGCTCCAAAAGAAAGGTGTTGCGGTTGCGGGTGATGTAGTGGCCTTACCTAAATACAGGGGTATGCTGGGCACGGTTGCTACTGTAGCCAGGGAAGAAGGTCTATCAGCTCTTTGGAAAGGAATTGTACCCGGGTTGCATCGTCAGTGCCTGTATGGTGGTTTGAGAATTGGGTTGTATGATCCTATTAAGACCTTATATGTGGGCAATGACTTCGTTGGAGATGTTCCTTTAACAAAGAAAATTCTTGCTGCCTTGACAACAGGTGCTCTAGCAATCACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCAAGCTGAGGGAAAATTACCACCAGGTGCACCAAGGCGCTATTCTGGCGCACTGAATGCATATTCCACCATTTTGAGACAGGAGGGAGTTGGGGCTCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCTAGTTATGATCAAGTGAAGCAGACACTGTTGAAAATTCCCGGGTTTAAGGACAATATTGTCACTCATCTATTTGCCGGTCTGGGGGCAGGTTTCTTTGCCGTCTGTATTGGCTCACCAGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTGCTGCTTACAAAAGCACAATTGATTGCTTTGTTAAAACTTTGAAGAATGATGGACCTTTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGAAGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCTTCGAGCAGGCTAAGAAGTTCGTGAAAAGTATAGAGTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003824 GO:0003844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010021 GO:0010033 GO:0016740 GO:0016757 GO:0016758 GO:0019725 GO:0033500 GO:0034284 GO:0034285 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050896 GO:0051716 GO:0055082 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071310 GO:0071322 GO:0071324 GO:0071326 GO:0071329 GO:0071331 GO:0071332 GO:0071333 GO:0071478 GO:0071482 GO:0071704 GO:0104004 GO:1901135 GO:1901137 GO:1901576 GO:1901700 GO:1901701 GO:2000896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase Alpha-amylase_C CBM_48

Protein Analysis

307

Amino Acids

32.81

Weight (kDa)

9.57

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 109	1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	116 - 210	2.8e-22	Mitochondrial carrier protein
Mito_carr	PF00153	216 - 302	5.8e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36390 AT5G03650
fragaria_vesca	FvH4_6g18120 FvH4_6g18120 FvH4_6g18120 FvH4_6g18120 FvH4_6g18120
malus_domestica	MD12G1020600.v1.1 MD14G1017700.v1.1
prunus_persica	Prupe.7G115400_v2.0.a1 Prupe.7G115400_v2.0.a1
pyrus_communis	pycom12g01930 pycom14g01610
rosa_chinensis	RchiOBHm_Chr3g0472421
rosa_laevigata	RLG00000024081
rosa_multiflora	Rmu_co8370739.1_g000001 Rmu_sc0001096.1_g000015
rosa_roxburghii	Rroxscaffold_6G00408930
rosa_rugosa	Rorug03G0124700 Rorug03G0124700 Rorug03G0124800 Rorug03G0124900
rosa_samantha	Rh3AG177100 Rh3BG203100 Rh3CG193400 Rh3CG200600 Rh3DG172000
rosa_wichuraiana	Rw3G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AasI	GACNNNNNNGTC	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	839
AciI	CCGC	4 cut(s)	8, 66, 143, 149
AclWI	GGATC	2 cut(s)	296, 859
AcsI	RAATTY	3 cut(s)	363, 630, 835
AcuI	CTGAAG	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	88, 249
AfiI	CCNNNNNNNGG	2 cut(s)	678, 839
AgsI	TTSAA	3 cut(s)	440, 628, 793
AjnI	CCWGG	2 cut(s)	209, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AluBI	AGCT	4 cut(s)	124, 230, 443, 596
AluI	AGCT	4 cut(s)	124, 230, 443, 596
Alw21I	GWGCWC	2 cut(s)	391, 469
Alw26I	GTCTC	1 cut(s)	508
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	296, 859
AlwNI	CAGNNNCTG	2 cut(s)	271, 622
Ama87I	CYCGRG	2 cut(s)	251, 635
AoxI	GGCC	2 cut(s)	162, 810
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	4 cut(s)	54, 371, 584, 752
ApoI	RAATTY	3 cut(s)	363, 630, 835
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AseI	ATTAAT	1 cut(s)	579
AspLEI	GCGC	3 cut(s)	59, 477, 488
AspS9I	GGNCC	2 cut(s)	551, 803
AsuC2I	CCSGG	4 cut(s)	252, 253, 636, 637
AsuHPI	GGTGA	2 cut(s)	164, 702
AvaI	CYCGRG	2 cut(s)	251, 635
AvaII	GGWCC	2 cut(s)	551, 803
BaeGI	GKGCMC	2 cut(s)	194, 469
BanII	GRGCYC	1 cut(s)	535
Bbv12I	GWGCWC	2 cut(s)	391, 469
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	66, 358, 571, 739
BccI	CCATC	2 cut(s)	733, 794
BceAI	ACGGC	1 cut(s)	680
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	211, 462
BclI	TGATCA	2 cut(s)	604, 864
BcnI	CCSGG	4 cut(s)	252, 253, 636, 637
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	4 cut(s)	392, 593, 597, 848
BfmI	CTRYAG	1 cut(s)	204
BfoI	RGCGCY	2 cut(s)	60, 478
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	4 cut(s)	55, 372, 585, 753
BlsI	GCNGC	4 cut(s)	56, 373, 586, 754
Bme1390I	CCNGG	6 cut(s)	211, 252, 253, 462, 636, 637
Bme18I	GGWCC	2 cut(s)	551, 803
BmeT110I	CYCGRG	2 cut(s)	251, 635
BmgT120I	GGNCC	2 cut(s)	551, 803
BmrFI	CCNGG	6 cut(s)	211, 252, 253, 462, 636, 637
BmsI	GCATC	1 cut(s)	268
Bpu10I	CCTNAGC	1 cut(s)	444
BpuMI	CCSGG	4 cut(s)	252, 253, 636, 637
BsaAI	YACGTR	1 cut(s)	566
BsaJI	CCNNGG	4 cut(s)	210, 251, 470, 635
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 839
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	547, 713
Bse3DI	GCAATG	2 cut(s)	334, 558
BseBI	CCWGG	2 cut(s)	211, 462
BseDI	CCNNGG	4 cut(s)	210, 251, 470, 635
BseGI	GGATG	1 cut(s)	828
BseLI	CCNNNNNNNGG	2 cut(s)	678, 839
BseMI	GCAATG	2 cut(s)	334, 558
BseMII	CTCAG	2 cut(s)	69, 435
BseNI	ACTGG	2 cut(s)	547, 713
BseSI	GKGCMC	2 cut(s)	194, 469
BseXI	GCAGC	4 cut(s)	66, 358, 571, 739
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	164, 812
BsiHKAI	GWGCWC	2 cut(s)	391, 469
BsiHKCI	CYCGRG	2 cut(s)	251, 635
BsiSI	CCGG	4 cut(s)	39, 252, 636, 672
BslI	CCNNNNNNNGG	2 cut(s)	678, 839
BsmAI	GTCTC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	164, 812
BsoBI	CYCGRG	2 cut(s)	251, 635
Bsp1286I	GDGCHC	4 cut(s)	194, 391, 469, 535
Bsp143I	GATC	5 cut(s)	301, 418, 604, 851, 864
BspACI	CCGC	4 cut(s)	8, 66, 143, 149
BspANI	GGCC	2 cut(s)	164, 812
BspCNI	CTCAG	2 cut(s)	70, 436
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	2 cut(s)	296, 859
BsrDI	GCAATG	2 cut(s)	334, 558
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	2 cut(s)	547, 713
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	4 cut(s)	210, 251, 470, 635
BssMI	GATC	5 cut(s)	301, 418, 604, 851, 864
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	211, 462
Bst4CI	ACNGT	4 cut(s)	196, 205, 403, 624
BstAPI	GCANNNNNTGC	2 cut(s)	494, 569
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	52, 70, 888
BstDEI	CTNAG	3 cut(s)	78, 444, 891
BstF5I	GGATG	1 cut(s)	828
BstH2I	RGCGCY	2 cut(s)	60, 478
BstHHI	GCGC	3 cut(s)	59, 477, 488
BstKTI	GATC	5 cut(s)	304, 421, 607, 854, 867
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	5 cut(s)	301, 418, 604, 851, 864
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 206, 483, 494, 569, 593
BstNI	CCWGG	2 cut(s)	211, 462
BstSCI	CCNGG	6 cut(s)	209, 250, 251, 460, 634, 635
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	2 cut(s)	194, 469
BstV1I	GCAGC	4 cut(s)	66, 358, 571, 739
BstX2I	RGATCY	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	851
BsuRI	GGCC	2 cut(s)	164, 812
BtsCI	GGATG	1 cut(s)	828
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	5 cut(s)	102, 272, 408, 488, 620
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	3 cut(s)	52, 70, 888
CaiI	CAGNNNCTG	2 cut(s)	271, 622
CfoI	GCGC	3 cut(s)	59, 477, 488
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	551, 803
Cfr9I	CCCGGG	2 cut(s)	251, 635
CsiI	ACCWGGT	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	87, 248
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	1 cut(s)	868
CviQI	GTAC	2 cut(s)	87, 248
DdeI	CTNAG	3 cut(s)	78, 444, 891
DpnI	GATC	5 cut(s)	303, 420, 606, 853, 866
DpnII	GATC	5 cut(s)	301, 418, 604, 851, 864
DraIII	CACNNNGTG	1 cut(s)	464
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	535
Eco47I	GGWCC	2 cut(s)	551, 803
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	251, 635
EcoRII	CCWGG	2 cut(s)	209, 460
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	1 cut(s)	871
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 420, 452
FatI	CATG	1 cut(s)	867
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	2 cut(s)	604, 864
Fnu4HI	GCNGC	4 cut(s)	55, 372, 585, 753
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	4 cut(s)	55, 372, 585, 753
FspBI	CTAG	4 cut(s)	392, 593, 597, 848
GlaI	GCGC	3 cut(s)	58, 476, 487
GluI	GCNGC	4 cut(s)	55, 372, 585, 753
GsaI	CCCAGC	1 cut(s)	191
HaeII	RGCGCY	2 cut(s)	60, 478
HaeIII	GGCC	2 cut(s)	164, 812
HapII	CCGG	4 cut(s)	39, 252, 636, 672
HhaI	GCGC	3 cut(s)	59, 477, 488
Hin1II	CATG	1 cut(s)	871
Hin6I	GCGC	3 cut(s)	57, 475, 486
HinP1I	GCGC	3 cut(s)	57, 475, 486
HinfI	GANTC	2 cut(s)	746, 914
HpaII	CCGG	4 cut(s)	39, 252, 636, 672
HphI	GGTGA	2 cut(s)	164, 702
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188III	TCNNGA	3 cut(s)	538, 732, 901
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	5 cut(s)	43, 70, 212, 837, 889
HpyCH4III	ACNGT	4 cut(s)	196, 205, 403, 624
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	4 cut(s)	259, 467, 497, 563
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 206, 483, 494, 569, 593
HpyF3I	CTNAG	3 cut(s)	78, 444, 891
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	1 cut(s)	871
HspAI	GCGC	3 cut(s)	57, 475, 486
Ksp22I	TGATCA	2 cut(s)	604, 864
Kzo9I	GATC	5 cut(s)	301, 418, 604, 851, 864
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	4 cut(s)	66, 358, 571, 739
LweI	GCATC	1 cut(s)	268
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	4 cut(s)	392, 593, 597, 848
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	5 cut(s)	303, 420, 606, 853, 866
MboI	GATC	5 cut(s)	301, 418, 604, 851, 864
MboII	GAAGA	2 cut(s)	227, 805
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	851
MhlI	GDGCHC	4 cut(s)	194, 391, 469, 535
MluCI	AATT	8 cut(s)	243, 288, 363, 452, 546, 630, 768, 835
MlyI	GAGTC	1 cut(s)	923
MmeI	TCCRAC	2 cut(s)	319, 437
MnlI	CCTC	2 cut(s)	439, 514
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	6 cut(s)	309, 353, 579, 642, 726, 783
MspI	CCGG	4 cut(s)	39, 252, 636, 672
MspR9I	CCNGG	6 cut(s)	211, 252, 253, 462, 636, 637
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	2 cut(s)	211, 462
MwoI	GCNNNNNNNGC	8 cut(s)	56, 65, 74, 206, 483, 494, 569, 593
NciI	CCSGG	4 cut(s)	252, 253, 636, 637
NdeII	GATC	5 cut(s)	301, 418, 604, 851, 864
NlaIII	CATG	1 cut(s)	871
NmuCI	GTSAC	1 cut(s)	655
NsiI	ATGCAT	1 cut(s)	499
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	746
PflMI	CCANNNNNTGG	1 cut(s)	839
PkrI	GCNGC	4 cut(s)	56, 373, 586, 754
PleI	GAGTC	1 cut(s)	922
PpsI	GAGTC	1 cut(s)	922
Ppu21I	YACGTR	1 cut(s)	566
PshBI	ATTAAT	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	209, 460
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	209, 460
PspPI	GGNCC	2 cut(s)	551, 803
PstNI	CAGNNNCTG	2 cut(s)	271, 622
PsuI	RGATCY	1 cut(s)	851
RsaI	GTAC	2 cut(s)	88, 249
RsaNI	GTAC	2 cut(s)	87, 248
SaqAI	TTAA	6 cut(s)	309, 353, 579, 642, 726, 783
SatI	GCNGC	4 cut(s)	55, 372, 585, 753
Sau3AI	GATC	5 cut(s)	301, 418, 604, 851, 864
Sau96I	GGNCC	2 cut(s)	551, 803
SchI	GAGTC	1 cut(s)	923
ScrFI	CCNGG	6 cut(s)	211, 252, 253, 462, 636, 637
SduI	GDGCHC	4 cut(s)	194, 391, 469, 535
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	2 cut(s)	551, 803
SmaI	CCCGGG	2 cut(s)	253, 637
Sse9I	AATT	8 cut(s)	243, 288, 363, 452, 546, 630, 768, 835
SsiI	CCGC	4 cut(s)	8, 66, 143, 149
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	4 cut(s)	392, 593, 597, 848
StyD4I	CCNGG	6 cut(s)	209, 250, 251, 460, 634, 635
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	4 cut(s)	196, 205, 403, 624
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	1 cut(s)	882
TasI	AATT	8 cut(s)	243, 288, 363, 452, 546, 630, 768, 835
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	6 cut(s)	309, 353, 579, 642, 726, 783
Tru9I	TTAA	6 cut(s)	309, 353, 579, 642, 726, 783
TscAI	CASTG	5 cut(s)	109, 272, 408, 495, 627
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	4 cut(s)	54, 371, 584, 752
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	1 cut(s)	817
TspMI	CCCGGG	2 cut(s)	251, 635
TspRI	CASTG	5 cut(s)	109, 272, 408, 495, 627
Van91I	CCANNNNNTGG	1 cut(s)	839
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	2 cut(s)	551, 803
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	3 cut(s)	363, 630, 835
XmaI	CCCGGG	2 cut(s)	251, 635
XspI	CTAG	4 cut(s)	392, 593, 597, 848
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.