Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8403897.1

Orthogroup ID

OG0006817

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1164

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8403897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 809 bp

aatttacaaatccatatggaattcgatctacatctccaggcagttccaaggcttcatctgatagattctcacaatttggcaccgcacgcgattaccatgattttgatatgcaaaatgacttgttctggcatgatgagaaagatgatgcagacttcatgactccttgctttgacggggtagacttctttggctgtcccactgaggataagttcatcatgacttcagacactgacaaaaacaatgaggacctgctgggtctgcatcataaatcggaagcatttcgatcagaaataagccttgattacttggacaagaaatgtcttactaatatttcttccacggatgacaaaggtgtttgtgtgacagactactgtcagtttgaaatgaaacatcaacttaaaggaggctctgaggaggagcctgctggtgaaaagttgaaagaaactgatttggatatctcccatgtgaatgttttggggggttttccttccgtgaatagaataagaaagagttctaactactctcctaaaaggagttccacaaagggctggttggaaaatgtaaaaggttcttctgatttacatggtaagattgcagagaaagatatcaggccggatggaattgacagctctgaagttggaaacagtgatgtaaatgaagaatcccatgatcctgatgaagacattgatgaagtttctatgtacaaaactgatgagaatgagtatgaagttttcgatttaagagtcatacacagaaaaaacaggtttgttgggtatagtctactttgtgtagctttgattgaatcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000166 GO:0000278 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005886 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0008360 GO:0008361 GO:0009898 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0015629 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019897 GO:0019898 GO:0022402 GO:0022603 GO:0022604 GO:0023052 GO:0030307 GO:0030427 GO:0030554 GO:0030863 GO:0030864 GO:0031234 GO:0031567 GO:0031569 GO:0032153 GO:0032155 GO:0032465 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032878 GO:0032879 GO:0032880 GO:0032954 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035091 GO:0035556 GO:0035639 GO:0035839 GO:0036094 GO:0036211 GO:0040008 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0045786 GO:0045927 GO:0045930 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051285 GO:0051286 GO:0051302 GO:0051493 GO:0051510 GO:0051512 GO:0051516 GO:0051518 GO:0051519 GO:0051641 GO:0051716 GO:0051726 GO:0060341 GO:0065007 GO:0065008 GO:0070727 GO:0070938 GO:0071342 GO:0071704 GO:0071840 GO:0071944 GO:0072395 GO:0072413 GO:0072453 GO:0072471 GO:0090066 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0099568 GO:0099738 GO:0120105 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901648 GO:1901981 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902412 GO:1902471 GO:1902749 GO:1902750 GO:1903047 GO:1903066 GO:1903067 GO:1903076 GO:1903077 GO:1903436 GO:1903505 GO:1903827 GO:1903828 GO:1904375 GO:1904376 GO:1905475 GO:1905476 GO:2000073 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

268

Amino Acids

30.32

Weight (kDa)

4.64

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40120
fragaria_vesca	FvH4_7g24530 FvH4_7g24530 FvH4_7g24530 FvH4_7g24530 FvH4_7g24530
malus_domestica	MD01G1153300.v1.1 MD07G1222300.v1.1
prunus_persica	Prupe.2G250500_v2.0.a1 Prupe.2G250500_v2.0.a1 Prupe.2G250500_v2.0.a1
pyrus_communis	pycom01g17090 pycom07g20090
rosa_chinensis	RchiOBHm_Chr1g0370311 RchiOBHm_Chr1g0370321
rosa_laevigata	RLG00000027057
rosa_multiflora	Rmu_co8403897.1_g000001 Rmu_sc0006707.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286670 Rroxscaffold_4G00287350
rosa_rugosa	Rorug01G0355700
rosa_samantha	Rh1AG364100 Rh1BG327300 Rh1CG340300 Rh1DG357600
rosa_wichuraiana	Rw1G032040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	2 cut(s)	179, 780
AccII	CGCG	1 cut(s)	89
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	2 cut(s)	206, 653
AfaI	GTAC	1 cut(s)	703
AgsI	TTSAA	3 cut(s)	382, 438, 802
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	629, 793
AluI	AGCT	2 cut(s)	629, 793
AlwI	GGATC	1 cut(s)	664
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	610
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	2 cut(s)	278, 510
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	686
BccI	CCATC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	81, 419
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	2 cut(s)	135, 270
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	47, 338
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	47, 338
BseGI	GGATG	2 cut(s)	348, 621
BseJI	GATNNNNATC	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	191, 401
BseRI	GAGGAG	2 cut(s)	427, 430
BseYI	CCCAGC	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	612
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	612
Bsp1407I	TGTACA	1 cut(s)	701
Bsp143I	GATC	3 cut(s)	25, 283, 669
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	2 cut(s)	192, 402
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	2 cut(s)	155, 215
BspLI	GGNNCC	2 cut(s)	81, 419
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	701
BssECI	CCNNGG	2 cut(s)	47, 338
BssMI	GATC	3 cut(s)	25, 283, 669
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	373, 646
BstAUI	TGTACA	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	87, 422
BstDEI	CTNAG	2 cut(s)	200, 410
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	348, 621
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	28, 286, 672
BstMBI	GATC	3 cut(s)	25, 283, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 258
BstNI	CCWGG	1 cut(s)	38
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	348, 621
BtsIMutI	CAGTG	3 cut(s)	197, 227, 651
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	87, 422
CaiI	CAGNNNCTG	1 cut(s)	229
CciI	TCATGA	2 cut(s)	155, 215
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	702
CviAII	CATG	7 cut(s)	97, 130, 156, 216, 463, 583, 667
CviJI	RGCY	9 cut(s)	52, 191, 296, 407, 420, 548, 612, 629, 793
CviKI_1	RGCY	9 cut(s)	52, 191, 296, 407, 420, 548, 612, 629, 793
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	2 cut(s)	200, 410
DpnI	GATC	3 cut(s)	27, 285, 671
DpnII	GATC	3 cut(s)	25, 283, 669
Eco130I	CCWWGG	1 cut(s)	47
Eco32I	GATATC	2 cut(s)	456, 606
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	206, 653
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	2 cut(s)	456, 606
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	7 cut(s)	100, 133, 159, 219, 466, 586, 670
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	7 cut(s)	96, 129, 155, 215, 462, 582, 666
FauNDI	CATATG	1 cut(s)	15
FblI	GTMKAC	2 cut(s)	179, 780
FokI	GGATG	2 cut(s)	355, 628
GsaI	CCCAGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	1 cut(s)	613
Hin1II	CATG	7 cut(s)	100, 133, 159, 219, 466, 586, 670
HinfI	GANTC	5 cut(s)	65, 159, 661, 743, 802
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	2 cut(s)	180, 781
Hpy188I	TCNGA	7 cut(s)	60, 225, 273, 288, 411, 576, 633
Hpy188III	TCNNGA	3 cut(s)	156, 216, 673
Hpy8I	GTNNAC	2 cut(s)	180, 781
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	373, 646
HpyCH4V	TGCA	4 cut(s)	111, 148, 261, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 258
HpyF3I	CTNAG	2 cut(s)	200, 410
Hsp92II	CATG	7 cut(s)	100, 133, 159, 219, 466, 586, 670
Kzo9I	GATC	3 cut(s)	25, 283, 669
LmnI	GCTCC	1 cut(s)	417
LweI	GCATC	2 cut(s)	135, 270
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	3 cut(s)	27, 285, 671
MboI	GATC	3 cut(s)	25, 283, 669
MboII	GAAGA	4 cut(s)	326, 563, 670, 691
MluCI	AATT	3 cut(s)	20, 73, 620
MlyI	GAGTC	2 cut(s)	153, 752
MmeI	TCCRAC	2 cut(s)	533, 618
MnlI	CCTC	5 cut(s)	195, 237, 397, 405, 408
MroXI	GAANNNNTTC	2 cut(s)	278, 510
MseI	TTAA	2 cut(s)	398, 739
MslI	CAYNNNNRTG	1 cut(s)	467
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	86, 258
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	3 cut(s)	25, 283, 669
NlaIII	CATG	7 cut(s)	100, 133, 159, 219, 466, 586, 670
NlaIV	GGNNCC	2 cut(s)	81, 419
NmuCI	GTSAC	1 cut(s)	360
PagI	TCATGA	2 cut(s)	155, 215
PdmI	GAANNNNTTC	2 cut(s)	278, 510
PfeI	GAWTC	3 cut(s)	65, 661, 802
PleI	GAGTC	2 cut(s)	153, 751
PpsI	GAGTC	2 cut(s)	153, 751
PpuMI	RGGWCCY	1 cut(s)	246
PshAI	GACNNNNGTC	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	81, 419
PspPI	GGNCC	1 cut(s)	246
PspPPI	RGGWCCY	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	398, 739
Sau3AI	GATC	3 cut(s)	25, 283, 669
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	2 cut(s)	153, 752
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	6 cut(s)	251, 354, 570, 631, 766, 795
SfaNI	GCATC	2 cut(s)	135, 270
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	467
Sse9I	AATT	3 cut(s)	20, 73, 620
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	373, 646
TaqI	TCGA	3 cut(s)	24, 282, 734
TasI	AATT	3 cut(s)	20, 73, 620
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	3 cut(s)	65, 661, 802
Tru1I	TTAA	2 cut(s)	398, 739
Tru9I	TTAA	2 cut(s)	398, 739
TscAI	CASTG	3 cut(s)	204, 234, 651
TseFI	GTSAC	1 cut(s)	360
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	8 cut(s)	44, 144, 201, 400, 671, 692, 704, 740
TspGWI	ACGGA	2 cut(s)	355, 480
TspRI	CASTG	3 cut(s)	204, 234, 651
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	20
XmiI	GTMKAC	2 cut(s)	179, 780
XmnI	GAANNNNTTC	2 cut(s)	278, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.