Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8408317.1

Orthogroup ID

OG0006314

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1248

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8408317.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1049 bp

gtgtgggattgcatggtagcgatagagattcttcaatggtgggacagatgccagtttcttgttatctatgttcagaactaagagatggagcttttgacaattccatggtgacagagtttgttttgtatgatatctgtcatgcaaggcagattgcagcagaaaaagcacactctacttgtacccttgatgatgctaaacatcccaaaggttccaatcagagcacggagggtgcaactttaaagttgggtgatgggtcttgtccaacgaaggtcaaatctcaacacaagagcagtgattccgattctccagcctggccatttgcagctctgcatccaggtcttgaaattgcagccattgttatgcaagttccatttgaaaagagagagagcttgaaatacaagagaggggataaggtatgtgataaagtacctgcaaacctacttaagctgtccatggttgaacagaagaacaaggatgaccctgataatcaaaactcaggaaacttgaaggtgataattccatctggaaatcatggttttccggttgctgaaagcaagggtccttcgtcgttactagatcgatggaggttgggtggtggttgtgactgtggtggctgggacatgtcctgtcctcttactgtgttaagcaatcccaacattcagttagctgataatcaattatttgaagagactcagcagcctttggaactttttgttcagggatcaaaggagaaaaaaccagcattgaccatgacaatggttgaagatggacagtatgcagttgattttcatgcacagttgtcgacattacaagcattctctatgtgtgtttctattctgcatggtacagaaacatcgacagcagtcactgggcaggaggaaagcaaacagttgtcgcagtgcaattcattgaaagtgcttaaagaggaagtgaagttcttaattgaagcagtcacagaaggggagatgaagaaagtagctaagagggtgaaaaagatccaaccatcttatgtgctcgattcacccttctctcctattgcacgagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3527

Protein Analysis

348

Amino Acids

37.95

Weight (kDa)

5.89

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11450
fragaria_vesca	FvH4_5g02400 FvH4_5g02400 FvH4_5g02400 FvH4_5g02400 FvH4_5g02400
malus_domestica	MD06G1083000.v1.1
prunus_persica	Prupe.5G100100_v2.0.a1 Prupe.5G100100_v2.0.a1 Prupe.5G100100_v2.0.a1 Prupe.5G100100_v2.0.a1
pyrus_communis	pycom06g07990
rosa_chinensis	RchiOBHm_Chr7g0197711
rosa_laevigata	RLG00000003918 RLG00000015449
rosa_multiflora	Rmu_co8408317.1_g000001 Rmu_sc0006732.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258280
rosa_rugosa	Rorug07G0042300 Rorug07G0042400 Rorug07G0042500 Rorug07G0042600
rosa_samantha	Rh7AG166800 Rh7BG168900 Rh7CG175300 Rh7DG168600
rosa_wichuraiana	Rw7G014520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	802
AclWI	GGATC	2 cut(s)	729, 990
AcoI	YGGCCR	1 cut(s)	313
AfaI	GTAC	3 cut(s)	180, 428, 846
AflII	CTTAAG	1 cut(s)	442
AflIII	ACRYGT	1 cut(s)	620
AjnI	CCWGG	2 cut(s)	310, 333
AloI	GAACNNNNNNTCC	2 cut(s)	919, 951
AluBI	AGCT	6 cut(s)	91, 325, 389, 447, 667, 979
AluI	AGCT	6 cut(s)	91, 325, 389, 447, 667, 979
Alw21I	GWGCWC	2 cut(s)	223, 1016
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	729, 990
AlwNI	CAGNNNCTG	1 cut(s)	868
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	4 cut(s)	154, 322, 349, 696
AspS9I	GGNCC	1 cut(s)	559
AsuHPI	GGTGA	5 cut(s)	120, 259, 522, 999, 1013
AvaII	GGWCC	1 cut(s)	559
BalI	TGGCCA	1 cut(s)	315
BauI	CACGAG	1 cut(s)	1040
Bbv12I	GWGCWC	2 cut(s)	223, 1016
BbvI	GCAGC	4 cut(s)	166, 334, 361, 708
BccI	CCATC	6 cut(s)	79, 244, 528, 575, 760, 1011
BcgI	CGANNNNNNTGC	2 cut(s)	782, 816
BciT130I	CCWGG	2 cut(s)	312, 335
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	1 cut(s)	574
BfrI	CTTAAG	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	4 cut(s)	155, 323, 350, 697
BlsI	GCNGC	4 cut(s)	156, 324, 351, 698
Bme1390I	CCNGG	2 cut(s)	312, 335
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	2 cut(s)	210, 560
BmrFI	CCNGG	2 cut(s)	312, 335
BmrI	ACTGGG	1 cut(s)	878
BmsI	GCATC	3 cut(s)	38, 180, 339
BmuI	ACTGGG	1 cut(s)	878
BoxI	GACNNNNGTC	1 cut(s)	862
BpmI	CTGGAG	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	104, 452
BsaWI	WCCGGW	1 cut(s)	540
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bse1I	ACTGG	2 cut(s)	52, 873
BseBI	CCWGG	2 cut(s)	312, 335
BseCI	ATCGAT	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	104, 452
BseGI	GGATG	3 cut(s)	198, 330, 480
BseMII	CTCAG	2 cut(s)	509, 706
BseNI	ACTGG	2 cut(s)	52, 873
BseXI	GCAGC	4 cut(s)	166, 334, 361, 708
BseYI	CCCAGC	1 cut(s)	614
BshFI	GGCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	579
BsiHKAI	GWGCWC	2 cut(s)	223, 1016
BsiSI	CCGG	1 cut(s)	541
BslFI	GGGAC	2 cut(s)	56, 631
BsmAI	GTCTC	1 cut(s)	682
BsmFI	GGGAC	2 cut(s)	56, 631
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	223, 1016
Bsp143I	GATC	3 cut(s)	576, 721, 995
Bsp19I	CCATGG	2 cut(s)	104, 452
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	508, 705
BspDI	ATCGAT	1 cut(s)	579
BspLI	GGNNCC	2 cut(s)	210, 560
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	2 cut(s)	729, 990
BspTI	CTTAAG	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	52, 873
BssECI	CCNNGG	2 cut(s)	104, 452
BssMI	GATC	3 cut(s)	576, 721, 995
BssSI	CACGAG	1 cut(s)	1040
BssT1I	CCWWGG	2 cut(s)	104, 452
Bst2BI	CACGAG	1 cut(s)	1040
Bst2UI	CCWGG	2 cut(s)	312, 335
Bst4CI	ACNGT	5 cut(s)	607, 639, 773, 797, 890
Bst6I	CTCTTC	1 cut(s)	680
BstAFI	CTTAAG	1 cut(s)	442
BstDEI	CTNAG	4 cut(s)	79, 495, 692, 980
BstDSI	CCRYGG	2 cut(s)	104, 452
BstF5I	GGATG	3 cut(s)	198, 330, 480
BstKTI	GATC	3 cut(s)	579, 724, 998
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	3 cut(s)	576, 721, 995
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	2 cut(s)	312, 335
BstNSI	RCATGY	1 cut(s)	624
BstPAI	GACNNNNGTC	1 cut(s)	862
BstSCI	CCNGG	2 cut(s)	310, 333
BstV1I	GCAGC	4 cut(s)	166, 334, 361, 708
BstX2I	RGATCY	1 cut(s)	995
BstXI	CCANNNNNNTGG	1 cut(s)	756
BstYI	RGATCY	1 cut(s)	995
Bsu15I	ATCGAT	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	579
BtgI	CCRYGG	2 cut(s)	104, 452
BtsCI	GGATG	3 cut(s)	198, 330, 480
BtsI	GCAGTG	2 cut(s)	297, 904
BtsIMutI	CAGTG	3 cut(s)	297, 866, 904
BveI	ACCTGC	1 cut(s)	438
CaiI	CAGNNNCTG	1 cut(s)	868
Cfr13I	GGNCC	1 cut(s)	559
ClaI	ATCGAT	1 cut(s)	579
Csp6I	GTAC	3 cut(s)	179, 427, 845
CviAII	CATG	9 cut(s)	13, 105, 139, 453, 532, 621, 750, 790, 841
CviQI	GTAC	3 cut(s)	179, 427, 845
DdeI	CTNAG	4 cut(s)	79, 495, 692, 980
DpnI	GATC	3 cut(s)	578, 723, 997
DpnII	GATC	3 cut(s)	576, 721, 995
DraI	TTTAAA	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	104, 452
Eco32I	GATATC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	2 cut(s)	310, 333
EcoRV	GATATC	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	104, 452
ErhI	CCWWGG	2 cut(s)	104, 452
FaeI	CATG	9 cut(s)	16, 108, 142, 456, 535, 624, 753, 793, 844
FaqI	GGGAC	2 cut(s)	56, 631
FatI	CATG	9 cut(s)	12, 104, 138, 452, 531, 620, 749, 789, 840
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	4 cut(s)	155, 323, 350, 697
FokI	GGATG	3 cut(s)	185, 317, 487
Fsp4HI	GCNGC	4 cut(s)	155, 323, 350, 697
FspBI	CTAG	1 cut(s)	574
GluI	GCNGC	4 cut(s)	155, 323, 350, 697
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	1 cut(s)	541
Hin1II	CATG	9 cut(s)	16, 108, 142, 456, 535, 624, 753, 793, 844
HincII	GTYRAC	1 cut(s)	803
HindII	GTYRAC	1 cut(s)	803
HinfI	GANTC	5 cut(s)	28, 295, 301, 690, 1018
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	5 cut(s)	120, 259, 522, 999, 1013
Hpy166II	GTNNAC	1 cut(s)	803
Hpy188I	TCNGA	3 cut(s)	75, 218, 300
Hpy188III	TCNNGA	3 cut(s)	340, 497, 524
Hpy8I	GTNNAC	1 cut(s)	803
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	5 cut(s)	261, 501, 572, 952, 1035
HpyCH4III	ACNGT	5 cut(s)	607, 639, 773, 797, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	4 cut(s)	79, 495, 692, 980
Hsp92II	CATG	9 cut(s)	16, 108, 142, 456, 535, 624, 753, 793, 844
Kzo9I	GATC	3 cut(s)	576, 721, 995
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	4 cut(s)	166, 334, 361, 708
LweI	GCATC	3 cut(s)	38, 180, 339
MaeI	CTAG	1 cut(s)	574
MaeIII	GTNAC	5 cut(s)	108, 569, 601, 864, 951
MalI	GATC	3 cut(s)	578, 723, 997
MboI	GATC	3 cut(s)	576, 721, 995
MboII	GAAGA	5 cut(s)	23, 477, 697, 775, 981
MflI	RGATCY	1 cut(s)	995
MhlI	GDGCHC	2 cut(s)	223, 1016
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	6 cut(s)	99, 344, 515, 676, 903, 941
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	684
MmeI	TCCRAC	2 cut(s)	286, 1023
MnlI	CCTC	7 cut(s)	219, 397, 578, 641, 870, 918, 977
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	5 cut(s)	238, 443, 643, 920, 940
MslI	CAYNNNNRTG	2 cut(s)	358, 754
Msp20I	TGGCCA	1 cut(s)	315
MspCI	CTTAAG	1 cut(s)	442
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	2 cut(s)	312, 335
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	2 cut(s)	312, 335
MwoI	GCNNNNNNNGC	1 cut(s)	163
NcoI	CCATGG	2 cut(s)	104, 452
NdeII	GATC	3 cut(s)	576, 721, 995
NlaIII	CATG	9 cut(s)	16, 108, 142, 456, 535, 624, 753, 793, 844
NlaIV	GGNNCC	2 cut(s)	210, 560
NmuCI	GTSAC	4 cut(s)	108, 601, 864, 951
NspI	RCATGY	1 cut(s)	624
PciI	ACATGT	1 cut(s)	620
PctI	GAATGC	1 cut(s)	814
PfeI	GAWTC	4 cut(s)	28, 295, 301, 1018
PkrI	GCNGC	4 cut(s)	156, 324, 351, 698
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
PpuMI	RGGWCCY	1 cut(s)	559
PscI	ACATGT	1 cut(s)	620
PshAI	GACNNNNGTC	1 cut(s)	862
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	310, 333
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	2 cut(s)	310, 333
PspN4I	GGNNCC	2 cut(s)	210, 560
PspPI	GGNCC	1 cut(s)	559
PspPPI	RGGWCCY	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	868
PsuI	RGATCY	1 cut(s)	995
RsaI	GTAC	3 cut(s)	180, 428, 846
RsaNI	GTAC	3 cut(s)	179, 427, 845
RseI	CAYNNNNRTG	2 cut(s)	358, 754
SalI	GTCGAC	1 cut(s)	801
SaqAI	TTAA	5 cut(s)	238, 443, 643, 920, 940
SatI	GCNGC	4 cut(s)	155, 323, 350, 697
Sau3AI	GATC	3 cut(s)	576, 721, 995
Sau96I	GGNCC	1 cut(s)	559
SchI	GAGTC	1 cut(s)	684
ScrFI	CCNGG	2 cut(s)	312, 335
SduI	GDGCHC	2 cut(s)	223, 1016
SfaNI	GCATC	3 cut(s)	38, 180, 339
SinI	GGWCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	2 cut(s)	358, 754
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	6 cut(s)	99, 344, 515, 676, 903, 941
SspMI	CTAG	1 cut(s)	574
StyD4I	CCNGG	2 cut(s)	310, 333
StyI	CCWWGG	2 cut(s)	104, 452
TaaI	ACNGT	5 cut(s)	607, 639, 773, 797, 890
TaqI	TCGA	4 cut(s)	579, 802, 856, 1016
TasI	AATT	6 cut(s)	99, 344, 515, 676, 903, 941
TfiI	GAWTC	4 cut(s)	28, 295, 301, 1018
Tru1I	TTAA	5 cut(s)	238, 443, 643, 920, 940
Tru9I	TTAA	5 cut(s)	238, 443, 643, 920, 940
TscAI	CASTG	3 cut(s)	297, 873, 904
TseFI	GTSAC	4 cut(s)	108, 601, 864, 951
TseI	GCWGC	4 cut(s)	154, 322, 349, 696
Tsp45I	GTSAC	4 cut(s)	108, 601, 864, 951
TspDTI	ATGAA	3 cut(s)	778, 896, 982
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	3 cut(s)	297, 873, 904
Vha464I	CTTAAG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	559
XceI	RCATGY	1 cut(s)	624
XmiI	GTMKAC	1 cut(s)	802
XspI	CTAG	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.