Rorug07G0042400

Domain of unknown function (DUF3527)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
2971568 .. 2975854
4287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0042400.1

Sequence Viewer

Length: 3408 bp
ATGAAGAAGTTTCGTCACCGTTTCAAGTTCGAGGCTTATTGGTTACTGAATCCTGAATGTGATGAAGTGGTGAATACAGCTTGGTCTAGGGATGTTACCGGTTCTCTGATGTACCAGGTTACACAAAAGATCAGTTATACTCGACTGGAATTGGACAAATGGCAGAAAAGAGTTTTCAAAGGTAGACAAATGCAGATGCTTGGTGTTAGGGCCAGGTTAGAAGAGCTTCTTGATGTCCATTTAACTGAAGAAGTGGTTGTCGAGAAGCGGCAACTGATGGGAACTTTACAGCAACTACTCTCACAGGAGGAGAGTTTTTGGAAGCAGCGGTCAAAAGTGCAATGGTTGCAAGAGGGGGACAGTAACACTAGCTATTTTCACAGAAAAGCGGCTAATAGGAGAAGGAAAAATTCCCTTCGTGGTTTATATAATGAGGATGGAGAATGGTGTGATGATGATGAGGGACTAGAGAAAGTAGTTACCTCTTATTTCTTTACAATGTTTACTGCTTCAGACATTGATTTTGAGGCAATGAGTACTACTTTGGAGGCAATACAGCCTTGTGTATCTCAAGCAATGAACGAGCAGTTGTGTGCACCATATTCGCAGGATGAGGTAAAGTGTGCTTTGTTCCAAATGTATCCAACTAAATCACCAGGACCGGATGGGATGCCTCCTCTATTTTTTCAACATTATTGGGATAAAATTGGTGGTGATATTACTGAGGCTGTGCATAGATTTTTGCAAACTGGTCAACTCTTGAAGGAGATCAATTTTACTCATATATGTCTAATTCCAAAGGTGGACAATCCGGAATATATGTCTGAATTGAGACCTATTGCATTGTGTAATGTAAATTACAAGATTTGTTCGAAAGTAATTGCTAATAGGTTGAAGTTGATATTACCATCTGTTATATCACCTTTTCAAAGTGCATTTGTGCCTGGGAGATTGATCACAGATAACATCTTAGTGGCCAATGAAGTGGCTCATTTTGTGCATAATAAACGAGATGGCAGTGAGGGTTATATGGCTCTCAAGTTAGATCTTAGTAAAGCTTATGATAGGATGGAGTGGTTCTTTCTCAGGAAGGTAATGGAACGGTTTGGTTTTCATTCCAACTGGATTGAGATGGTGATGCAGTGTGTCAGTACAGTGCGTTACTCTTTTGTGGTGCGAGGTAAACCGAGAGGTCTTGTAACACCTAGCAGAGGTTTGAGGCAGGGAGACCCGTTATCCCCCTATTTGTTCCTCATAGGGGCTGAAGGGTTCTCGGCTTTACTTCAACAAAAACAGGAGATGGGACTTTTACCCGGCATTGAGGTTTGTAATGAAGCCCCTGCTGTTAACCATTTATTGTTTGCGGATGATAGTATGCTCTATGCTAACGCTACTTTAGAAGACTGTTATCACATACAAGATGTTATTGAGACTTATGGCAGGGCCTCGGGGCAGTTAGTCAACTTTGATAAGAGTTCGGTAGTTTTCAGCAAGAATGTGTCAGAGTACATGAAGGGAGAGGTATCTAGCTATTTGGGAGTGCAGGTGGTGGATTCCCATGAAAAATATTTGGGTTTGCCTACTTATGTTGGGAGGAAGAAGACTTCTACCTTCCAATACATCAAGGATAATTTGGCGAAGAAGTTAGCAAATTGGCAAGGGAAGATGCTGAGTGGGGCTGGAAAAGATATTCTAATCAAGGTTGTAGCTCAAGCTTTGCCTTCTTATGCTATGAGTGTTTTCCAATTAACGAAGAATTTTTGTGATGATCTAGAGCAGATGTGTGCTCGGTTTTGGTGGGGTAGTACTTTAGATAAGAGAAAGATTCACTGGAAAACTTGGAAGGCTTTGTGTAACCCTAAGGAAGAAGGAGGTTTAGGGTTTCGTAGCTTGTCAAATTTCAACAATGCAATGCTTGCAAAACAAGCTTGGAGGGTAGTGAATAACCCCACGAGTTTGGTTGCTCGAATTTTCAAGGCTAAATATTTTCCAGATACTTCTTTTTGGATGACAACTCCTCATGATTCTCCTTCTTTCTCGTGGAGAAGCTTGTTTTCCACAAGGGAGTTTCTAAGGCAGAGTTCCTATTGGCAAATTGGCGATGGTAATACTGTTAACATTTGGTCAGACTGTTGGTTGCCTGGTGTACAAGATTTTAAGCCAATGGATAATAGCATTGCTGCTAATGAGGTTCAACAGGTTAGCGATTTAATGCTTCAAACAGGATTGTGGAATACTAGTTTGATTCGAAGGCTTTTCCCATTGACAGAGGCTGATGCTATCTTGAGCCTCCCTTTAAGTTCAAGACATGTTGATGACAGAGTTGTGTGGAGACTAGAGAAAAATGGTCGGTATTCTGTTAAAACAGCTTATCGATTTGATTTTGCTACTTCTAATGCTAGAAGTCCATTCCATTTGTCGGTGGGTGTGGCTTTTTGGAAAAAGCTTTGGAAGGTGAATATACCTAGCTCGGCTAAGATTCATATTTGGAGAGTTTGTCATAACATTTTGCCTTCAATGGAGAGACTAGAGTCAAAAATGGTGGTGCTGGATTCTCAGGTATGTGTTTTGTGTTCATCCGCAATTGAGACAACTTTACATCTTTGCAGAGATTGTCCTTTTATGAAGCAAATACTCCAATCTAATGGAGCTTTGAGTCAGGTGTGTTTTAATCCTCACACTGAGAATTGTGACATCTTAGGATGGTTTAGCTTTTGTGTTCAAGAGCTTTCTTTGATGGATTTGGGTGATTTAATTCATCTACTTTGGGGCGTCTGGAAAGAGAGAAATTGTAGAGTTTGGGAGAATAAGAGTCTTCCTGCCTGTGACGTGTTGATTAAGTCTATGGCCAGACTACATGCTTTTAGGTTTTATAATCTGAAAATGGGAATTGGTCGCACTGCAAGGTTTGCACGTTGGTCAGCCCCGCCTTTGGGATGGTACAAGATAAATGTTGATGGGTCTTTTGATCACACAACAAGGAATGGTGGTATTGGTTTTGTTATCAGAGACCATCAGGGAGCGTTTTTGGCAGGGGGAGGTCGACCACTACATGGTCTGCTTTCTCCTGAACATGCTGAAGTATTGGCTTGTGATATGGCAGTGCAGTTTGCTGTGGACAATGGCTTTGTTCCAGCTATCATGGAGACGGACGCACAGAGCGTGCAGAGGCAATTAACTAAGTCTGATGGGATTAATGTTTCCCTGTTGGGTCGCTTGTATGATGATCTTGTTTTGAGGTTGGAGAGCCATTCTAATCTGAAAATTGTTCACATCAGCAGAAATGCAAATAAGGTTGCACACATTATGGCAGCAAGGGTTACTACTGAGCTGCAGAGTTTCTTTTATTTTTCTACTTCCCCTGTTTTCTTATTAGCTGCGTTAGCAGCTGAAACCATTCCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1135

Amino Acids

129.69

Weight (kDa)

8.64

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 265 - 515 8.6e-30 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 785 - 878 6.1e-12 zinc-binding in reverse transcriptase
RVT_3 PF13456 984 - 1106 1.5e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2874
AarI CACCTGC 1 cut(s) 1534
Acc36I ACCTGC 1 cut(s) 1534
AccB7I CCANNNNNTGG 1 cut(s) 3053
AccI GTMKAC 2 cut(s) 184, 3043
AccIII TCCGGA 1 cut(s) 811
AciI CCGC 6 cut(s) 268, 328, 389, 1364, 2580, 2927
AcoI YGGCCR 2 cut(s) 975, 2847
AcsI RAATTY 4 cut(s) 409, 1756, 1897, 1968
AcuI CTGAAG 4 cut(s) 267, 495, 1284, 3099
AcyI GRCGYC 1 cut(s) 2772
AfaI GTAC 7 cut(s) 113, 538, 1153, 1508, 1807, 2148, 2942
AfiI CCNNNNNNNGG 6 cut(s) 1211, 1258, 2419, 2932, 2933, 3053
AflIII ACRYGT 2 cut(s) 2308, 2829
AgeI ACCGGT 1 cut(s) 98
AhlI ACTAGT 1 cut(s) 2237
AjiI CACGTC 1 cut(s) 2830
AjnI CCWGG 5 cut(s) 114, 212, 655, 943, 2140
Alw21I GWGCWC 2 cut(s) 598, 1789
Alw26I GTCTC 8 cut(s) 826, 1221, 1424, 2326, 2518, 2582, 3003, 3140
Alw44I GTGCAC 1 cut(s) 594
AlwNI CAGNNNCTG 1 cut(s) 2273
Ama87I CYCGRG 1 cut(s) 1447
Aor13HI TCCGGA 1 cut(s) 811
AoxI GGCC 4 cut(s) 210, 975, 1443, 2847
ApaLI GTGCAC 1 cut(s) 594
ApeKI GCWGC 6 cut(s) 325, 2180, 3311, 3331, 3377, 3386
ApoI RAATTY 4 cut(s) 409, 1756, 1897, 1968
ArsI GACNNNNNNTTYG 4 cut(s) 506, 538, 3110, 3142
AseI ATTAAT 1 cut(s) 3195
AsiGI ACCGGT 1 cut(s) 98
Asp700I GAANNNNTTC 2 cut(s) 225, 3396
AspS9I GGNCC 3 cut(s) 210, 659, 1443
AsuC2I CCSGG 1 cut(s) 1314
AsuHPI GGTGA 8 cut(s) 8, 82, 645, 725, 912, 1147, 2467, 2759
AsuII TTCGAA 2 cut(s) 872, 2248
AvaI CYCGRG 1 cut(s) 1447
AvaII GGWCC 1 cut(s) 659
AxyI CCTNAGG 1 cut(s) 1860
BaeGI GKGCMC 1 cut(s) 598
BalI TGGCCA 2 cut(s) 977, 2849
BauI CACGAG 2 cut(s) 1951, 2038
BbsI GAAGAC 3 cut(s) 1407, 1607, 2807
Bbv12I GWGCWC 2 cut(s) 598, 1789
BbvI GCAGC 6 cut(s) 337, 2167, 3318, 3323, 3364, 3398
BcgI CGANNNNNNTGC 2 cut(s) 585, 619
BciT130I CCWGG 5 cut(s) 116, 214, 657, 945, 2142
BciVI GTATCC 1 cut(s) 651
BclI TGATCA 2 cut(s) 954, 2968
BcnI CCSGG 1 cut(s) 1314
BcoDI GTCTC 8 cut(s) 826, 1221, 1424, 2326, 2518, 2582, 3003, 3140
BcuI ACTAGT 1 cut(s) 2237
BfmI CTRYAG 1 cut(s) 3332
BfuAI ACCTGC 1 cut(s) 1534
BfuI GTATCC 1 cut(s) 651
BglII AGATCT 1 cut(s) 1045
BisI GCNGC 8 cut(s) 269, 326, 390, 2181, 3312, 3332, 3378, 3387
BlsI GCNGC 8 cut(s) 270, 327, 391, 2182, 3313, 3333, 3379, 3388
BmcAI AGTACT 2 cut(s) 538, 1807
Bme1390I CCNGG 6 cut(s) 116, 214, 657, 945, 1314, 2142
Bme18I GGWCC 1 cut(s) 659
BmeT110I CYCGRG 1 cut(s) 1447
BmgBI CACGTC 1 cut(s) 2830
BmgT120I GGNCC 3 cut(s) 210, 659, 1443
BmrFI CCNGG 6 cut(s) 116, 214, 657, 945, 1314, 2142
BmsI GCATC 5 cut(s) 186, 660, 1128, 1656, 2266
BoxI GACNNNNGTC 1 cut(s) 2530
BpiI GAAGAC 3 cut(s) 1407, 1607, 2807
Bpu14I TTCGAA 2 cut(s) 872, 2248
BpuEI CTTGAG 4 cut(s) 555, 1022, 1695, 2305
BpuMI CCSGG 1 cut(s) 1314
Bsa29I ATCGAT 1 cut(s) 2374
BsaHI GRCGYC 1 cut(s) 2772
BsaI GGTCTC 3 cut(s) 826, 1221, 3003
BsaJI CCNNGG 2 cut(s) 944, 1446
BsaWI WCCGGW 3 cut(s) 98, 661, 811
BsaXI ACNNNNNCTCC 4 cut(s) 1530, 1560, 2482, 2512
Bsc4I CCNNNNNNNGG 6 cut(s) 1211, 1258, 2419, 2932, 2933, 3053
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 4 cut(s) 150, 754, 1127, 1835
Bse21I CCTNAGG 1 cut(s) 1860
Bse3DI GCAATG 5 cut(s) 347, 537, 582, 1917, 2175
BseAI TCCGGA 1 cut(s) 811
BseBI CCWGG 5 cut(s) 116, 214, 657, 945, 2142
BseCI ATCGAT 1 cut(s) 2374
BseDI CCNNGG 2 cut(s) 944, 1446
BseLI CCNNNNNNNGG 6 cut(s) 1211, 1258, 2419, 2932, 2933, 3053
BseMI GCAATG 5 cut(s) 347, 537, 582, 1917, 2175
BseMII CTCAG 6 cut(s) 714, 1099, 1661, 2570, 2673, 3318
BseNI ACTGG 4 cut(s) 150, 754, 1127, 1835
BseRI GAGGAG 3 cut(s) 323, 666, 2007
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 6 cut(s) 337, 2167, 3318, 3323, 3364, 3398
BsgI GTGCAG 3 cut(s) 1562, 3125, 3185
BshFI GGCC 4 cut(s) 212, 977, 1445, 2849
BshTI ACCGGT 1 cut(s) 98
BshVI ATCGAT 1 cut(s) 2374
BsiHKAI GWGCWC 2 cut(s) 598, 1789
BsiHKCI CYCGRG 1 cut(s) 1447
BsiSI CCGG 4 cut(s) 99, 662, 812, 1314
BslFI GGGAC 3 cut(s) 371, 477, 1317
BslI CCNNNNNNNGG 6 cut(s) 1211, 1258, 2419, 2932, 2933, 3053
BsmAI GTCTC 8 cut(s) 826, 1221, 1424, 2326, 2518, 2582, 3003, 3140
BsmBI CGTCTC 1 cut(s) 3140
BsmFI GGGAC 3 cut(s) 371, 477, 1317
BsnI GGCC 4 cut(s) 212, 977, 1445, 2849
Bso31I GGTCTC 3 cut(s) 826, 1221, 3003
BsoBI CYCGRG 1 cut(s) 1447
Bsp119I TTCGAA 2 cut(s) 872, 2248
Bsp1286I GDGCHC 2 cut(s) 598, 1789
Bsp13I TCCGGA 1 cut(s) 811
Bsp1407I TGTACA 1 cut(s) 2146
Bsp143I GATC 7 cut(s) 129, 768, 954, 1045, 1768, 2968, 3226
BspACI CCGC 6 cut(s) 268, 328, 389, 1364, 2580, 2927
BspANI GGCC 4 cut(s) 212, 977, 1445, 2849
BspCNI CTCAG 6 cut(s) 715, 1098, 1662, 2569, 2674, 3319
BspDI ATCGAT 1 cut(s) 2374
BspEI TCCGGA 1 cut(s) 811
BspHI TCATGA 1 cut(s) 2020
BspMAI CTGCAG 1 cut(s) 3336
BspMI ACCTGC 1 cut(s) 1534
BspQI GCTCTTC 1 cut(s) 216
BspT104I TTCGAA 2 cut(s) 872, 2248
BspTNI GGTCTC 3 cut(s) 826, 1221, 3003
BsrDI GCAATG 5 cut(s) 347, 537, 582, 1917, 2175
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 2146
BsrI ACTGG 4 cut(s) 150, 754, 1127, 1835
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 944, 1446
BssMI GATC 7 cut(s) 129, 768, 954, 1045, 1768, 2968, 3226
BssNI GRCGYC 1 cut(s) 2772
BssSI CACGAG 2 cut(s) 1951, 2038
Bst2BI CACGAG 2 cut(s) 1951, 2038
Bst2UI CCWGG 5 cut(s) 116, 214, 657, 945, 2142
Bst4CI ACNGT 7 cut(s) 20, 362, 1104, 1156, 1406, 2113, 2132
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 2772
BstAPI GCANNNNNTGC 3 cut(s) 346, 1916, 2909
BstAUI TGTACA 1 cut(s) 2146
BstBI TTCGAA 2 cut(s) 872, 2248
BstC8I GCNNGC 2 cut(s) 1917, 3164
BstENI CCTNNNNNAGG 1 cut(s) 1209
BstKTI GATC 7 cut(s) 132, 771, 957, 1048, 1771, 2971, 3229
BstMAI GTCTC 8 cut(s) 826, 1221, 1424, 2326, 2518, 2582, 3003, 3140
BstMBI GATC 7 cut(s) 129, 768, 954, 1045, 1768, 2968, 3226
BstMWI GCNNNNNNNGC 7 cut(s) 346, 1916, 1925, 2909, 3029, 3383, 3386
BstNI CCWGG 5 cut(s) 116, 214, 657, 945, 2142
BstNSI RCATGY 3 cut(s) 2312, 2861, 3077
BstPAI GACNNNNGTC 1 cut(s) 2530
BstSCI CCNGG 6 cut(s) 114, 212, 655, 943, 1312, 2140
BstSFI CTRYAG 1 cut(s) 3332
BstSLI GKGCMC 1 cut(s) 598
BstV1I GCAGC 6 cut(s) 337, 2167, 3318, 3323, 3364, 3398
BstV2I GAAGAC 3 cut(s) 1407, 1607, 2807
BstX2I RGATCY 1 cut(s) 1045
BstXI CCANNNNNNTGG 3 cut(s) 985, 1957, 2645
BstYI RGATCY 1 cut(s) 1045
Bsu15I ATCGAT 1 cut(s) 2374
Bsu36I CCTNAGG 1 cut(s) 1860
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 4 cut(s) 212, 977, 1445, 2849
BsuTUI ATCGAT 1 cut(s) 2374
BtgZI GCGATG 1 cut(s) 2115
BtrI CACGTC 1 cut(s) 2830
BtsI GCAGTG 4 cut(s) 1024, 1148, 2898, 3108
BtsIMutI CAGTG 7 cut(s) 1024, 1148, 1161, 1828, 2679, 2898, 3108
BveI ACCTGC 1 cut(s) 1534
Cac8I GCNNGC 2 cut(s) 1917, 3164
CaiI CAGNNNCTG 1 cut(s) 2273
CciI TCATGA 1 cut(s) 2020
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 210, 659, 1443
ClaI ATCGAT 1 cut(s) 2374
CseI GACGC 2 cut(s) 2761, 3161
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 7 cut(s) 112, 537, 1152, 1507, 1806, 2147, 2941
CspAI ACCGGT 1 cut(s) 98
CspCI CAANNNNNGTGG 2 cut(s) 2523, 2558
CviAII CATG 8 cut(s) 1510, 1559, 2021, 2309, 2858, 3053, 3074, 3142
CviQI GTAC 7 cut(s) 112, 537, 1152, 1507, 1806, 2147, 2941
DpnI GATC 7 cut(s) 131, 770, 956, 1047, 1770, 2970, 3228
DpnII GATC 7 cut(s) 129, 768, 954, 1045, 1768, 2968, 3226
EaeI YGGCCR 2 cut(s) 975, 2847
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco31I GGTCTC 3 cut(s) 826, 1221, 3003
Eco47I GGWCC 1 cut(s) 659
Eco57I CTGAAG 4 cut(s) 267, 495, 1284, 3099
Eco81I CCTNAGG 1 cut(s) 1860
Eco88I CYCGRG 1 cut(s) 1447
EcoNI CCTNNNNNAGG 1 cut(s) 1209
EcoO109I RGGNCCY 1 cut(s) 1443
EcoRII CCWGG 5 cut(s) 114, 212, 655, 943, 2140
Esp3I CGTCTC 1 cut(s) 3140
FaeI CATG 8 cut(s) 1513, 1562, 2024, 2312, 2861, 3056, 3077, 3145
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 3 cut(s) 371, 477, 1317
FatI CATG 8 cut(s) 1509, 1558, 2020, 2308, 2857, 3052, 3073, 3141
FauI CCCGC 1 cut(s) 2934
FbaI TGATCA 2 cut(s) 954, 2968
FblI GTMKAC 2 cut(s) 184, 3043
Fnu4HI GCNGC 8 cut(s) 269, 326, 390, 2181, 3312, 3332, 3378, 3387
Fsp4HI GCNGC 8 cut(s) 269, 326, 390, 2181, 3312, 3332, 3378, 3387
GluI GCNGC 8 cut(s) 269, 326, 390, 2181, 3312, 3332, 3378, 3387
HaeIII GGCC 4 cut(s) 212, 977, 1445, 2849
HapII CCGG 4 cut(s) 99, 662, 812, 1314
HgaI GACGC 2 cut(s) 2761, 3161
Hin1I GRCGYC 1 cut(s) 2772
Hin1II CATG 8 cut(s) 1513, 1562, 2024, 2312, 2861, 3056, 3077, 3145
HincII GTYRAC 5 cut(s) 755, 1348, 1462, 2116, 3044
HindII GTYRAC 5 cut(s) 755, 1348, 1462, 2116, 3044
HindIII AAGCTT 5 cut(s) 1056, 1713, 1926, 2047, 2444
HpaI GTTAAC 2 cut(s) 1348, 2116
HpaII CCGG 4 cut(s) 99, 662, 812, 1314
HphI GGTGA 8 cut(s) 8, 82, 645, 725, 912, 1147, 2467, 2759
Hpy188I TCNGA 9 cut(s) 108, 514, 826, 1504, 2128, 2880, 3008, 3187, 3261
HpyCH4III ACNGT 7 cut(s) 20, 362, 1104, 1156, 1406, 2113, 2132
HpyCH4IV ACGT 2 cut(s) 2829, 2914
HpyF10VI GCNNNNNNNGC 7 cut(s) 346, 1916, 1925, 2909, 3029, 3383, 3386
HpySE526I ACGT 2 cut(s) 2829, 2914
Hsp92I GRCGYC 1 cut(s) 2772
Hsp92II CATG 8 cut(s) 1513, 1562, 2024, 2312, 2861, 3056, 3077, 3145
Kpn2I TCCGGA 1 cut(s) 811
Ksp22I TGATCA 2 cut(s) 954, 2968
KspAI GTTAAC 2 cut(s) 1348, 2116
Kzo9I GATC 7 cut(s) 129, 768, 954, 1045, 1768, 2968, 3226
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 2648, 3020
Lsp1109I GCAGC 6 cut(s) 337, 2167, 3318, 3323, 3364, 3398
LweI GCATC 5 cut(s) 186, 660, 1128, 1656, 2266
MabI ACCWGGT 1 cut(s) 114
MaeII ACGT 2 cut(s) 2829, 2914
MalI GATC 7 cut(s) 131, 770, 956, 1047, 1770, 2970, 3228
MboI GATC 7 cut(s) 129, 768, 954, 1045, 1768, 2968, 3226
MfeI CAATTG 1 cut(s) 2583
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 2 cut(s) 598, 1789
MlsI TGGCCA 2 cut(s) 977, 2849
MluNI TGGCCA 2 cut(s) 977, 2849
MlyI GAGTC 3 cut(s) 2540, 2665, 2821
MmeI TCCRAC 3 cut(s) 668, 1143, 3222
Mox20I TGGCCA 2 cut(s) 977, 2849
MroI TCCGGA 1 cut(s) 811
MroXI GAANNNNTTC 2 cut(s) 225, 3396
MscI TGGCCA 2 cut(s) 977, 2849
MslI CAYNNNNRTG 2 cut(s) 971, 2313
Msp20I TGGCCA 2 cut(s) 977, 2849
MspA1I CMGCKG 2 cut(s) 328, 3389
MspI CCGG 4 cut(s) 99, 662, 812, 1314
MspR9I CCNGG 6 cut(s) 116, 214, 657, 945, 1314, 2142
MunI CAATTG 1 cut(s) 2583
MvaI CCWGG 5 cut(s) 116, 214, 657, 945, 2142
MwoI GCNNNNNNNGC 7 cut(s) 346, 1916, 1925, 2909, 3029, 3383, 3386
NciI CCSGG 1 cut(s) 1314
NdeII GATC 7 cut(s) 129, 768, 954, 1045, 1768, 2968, 3226
NlaIII CATG 8 cut(s) 1513, 1562, 2024, 2312, 2861, 3056, 3077, 3145
NmeAIII GCCGAG 2 cut(s) 1253, 2450
NmuCI GTSAC 3 cut(s) 14, 2690, 2825
NspI RCATGY 3 cut(s) 2312, 2861, 3077
NspV TTCGAA 2 cut(s) 872, 2248
PagI TCATGA 1 cut(s) 2020
PaqCI CACCTGC 1 cut(s) 1534
PciI ACATGT 1 cut(s) 2308
PciSI GCTCTTC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 3159
PdmI GAANNNNTTC 2 cut(s) 225, 3396
PfeI GAWTC 7 cut(s) 49, 1553, 1825, 2024, 2245, 2479, 2552
PflMI CCANNNNNTGG 1 cut(s) 3053
PinAI ACCGGT 1 cut(s) 98
PkrI GCNGC 8 cut(s) 270, 327, 391, 2182, 3313, 3333, 3379, 3388
PleI GAGTC 3 cut(s) 2539, 2664, 2820
PpsI GAGTC 3 cut(s) 2539, 2664, 2820
PscI ACATGT 1 cut(s) 2308
PshAI GACNNNNGTC 1 cut(s) 2530
PshBI ATTAAT 1 cut(s) 3195
PsiI TTATAA 1 cut(s) 2874
Psp6I CCWGG 5 cut(s) 114, 212, 655, 943, 2140
PspGI CCWGG 5 cut(s) 114, 212, 655, 943, 2140
PspPI GGNCC 3 cut(s) 210, 659, 1443
PstI CTGCAG 1 cut(s) 3336
PstNI CAGNNNCTG 1 cut(s) 2273
PsuI RGATCY 1 cut(s) 1045
PvuII CAGCTG 1 cut(s) 3389
RsaI GTAC 7 cut(s) 113, 538, 1153, 1508, 1807, 2148, 2942
RsaNI GTAC 7 cut(s) 112, 537, 1152, 1507, 1806, 2147, 2941
RseI CAYNNNNRTG 2 cut(s) 971, 2313
SalI GTCGAC 1 cut(s) 3042
SapI GCTCTTC 1 cut(s) 216
SatI GCNGC 8 cut(s) 269, 326, 390, 2181, 3312, 3332, 3378, 3387
Sau3AI GATC 7 cut(s) 129, 768, 954, 1045, 1768, 2968, 3226
Sau96I GGNCC 3 cut(s) 210, 659, 1443
ScaI AGTACT 2 cut(s) 538, 1807
SchI GAGTC 3 cut(s) 2540, 2665, 2821
ScrFI CCNGG 6 cut(s) 116, 214, 657, 945, 1314, 2142
SduI GDGCHC 2 cut(s) 598, 1789
SexAI ACCWGGT 1 cut(s) 114
SfaNI GCATC 5 cut(s) 186, 660, 1128, 1656, 2266
SfcI CTRYAG 1 cut(s) 3332
SfuI TTCGAA 2 cut(s) 872, 2248
SinI GGWCC 1 cut(s) 659
SmiMI CAYNNNNRTG 2 cut(s) 971, 2313
SmlI CTYRAG 4 cut(s) 570, 1037, 1710, 2284
SmoI CTYRAG 4 cut(s) 570, 1037, 1710, 2284
SpeI ACTAGT 1 cut(s) 2237
SsiI CCGC 6 cut(s) 268, 328, 389, 1364, 2580, 2927
SspI AATATT 2 cut(s) 1568, 1985
StyD4I CCNGG 6 cut(s) 114, 212, 655, 943, 1312, 2140
TaaI ACNGT 7 cut(s) 20, 362, 1104, 1156, 1406, 2113, 2132
TaiI ACGT 2 cut(s) 2832, 2917
TaqI TCGA 8 cut(s) 30, 142, 261, 872, 1966, 2248, 2374, 3043
TatI WGTACW 5 cut(s) 536, 1151, 1506, 1805, 2146
TauI GCSGC 2 cut(s) 271, 392
TfiI GAWTC 7 cut(s) 49, 1553, 1825, 2024, 2245, 2479, 2552
TscAI CASTG 7 cut(s) 1024, 1148, 1161, 1835, 2686, 2905, 3108
TseFI GTSAC 3 cut(s) 14, 2690, 2825
TseI GCWGC 6 cut(s) 325, 2180, 3311, 3331, 3377, 3386
Tsp45I GTSAC 3 cut(s) 14, 2690, 2825
TspGWI ACGGA 1 cut(s) 3164
TspRI CASTG 7 cut(s) 1024, 1148, 1161, 1835, 2686, 2905, 3108
Van91I CCANNNNNTGG 1 cut(s) 3053
VneI GTGCAC 1 cut(s) 594
VpaK11BI GGWCC 1 cut(s) 659
VspI ATTAAT 1 cut(s) 3195
XagI CCTNNNNNAGG 1 cut(s) 1209
XapI RAATTY 4 cut(s) 409, 1756, 1897, 1968
XbaI TCTAGA 1 cut(s) 1771
XceI RCATGY 3 cut(s) 2312, 2861, 3077
XmiI GTMKAC 2 cut(s) 184, 3043
XmnI GAANNNNTTC 2 cut(s) 225, 3396
ZrmI AGTACT 2 cut(s) 538, 1807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.