Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000114.1

Orthogroup ID

OG0016943

Physical Location & Seq

Genomic Coordinates Forward (+)

83226 .. 86149

Gene Structure 2924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000114.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggatcggaccaacgtgcataaacaaaaccaggacccccaaacactttatgaccatcagacagaacaccaccgccgtcgcacagcacaggacccaatgacccagaaccaccatcaccggatttatgtcccagaggtttccgtgtccgagatgtcttgggatattagtgttgaaactcctcaagttgatgcaattgatgatgtcaatttgccgaatcaatatgtttatgatgccattgagacagtgctatctgatgtttgcttggccatttctatgctgaaaaacgaggaaacgcgggactcgatcatgattctcgactccaaaagatttctagacagactaatgagttcattggaagaaaagaagcatcacgaagtgaagttgaaagagggtttgaagggcttagctaccaaacgcatggagctgcacaactcgttatcttcttcctggccaaagcaggaagcggctcttgcaaaaacccgcgagcttaagaagctgtgtgagagcaccctttcctccatgtttgatggaagacctgttcatataattgaagagattaatgcccgtttgaatagtggtgttgctgcatatgaaaatgtttgtctctggggtgaagcgtacaatatgagcgtgtactttgaacctcttcgtttttacttactaactttggggtgtcttcgggggttgatcatgcgaggaagcatgaatggcaccgtcagcacccagcagatttggatgagttgggttgagatggaaagtttcgagtttcgacgcggaaggcatggctcaccaaaatattggaagaaagaggttgatcatgcaattcatgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0005575 GO:0005623 GO:0007346 GO:0008150 GO:0012505 GO:0019220 GO:0019222 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0080090 GO:1904029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF773

Protein Analysis

277

Amino Acids

32.25

Weight (kDa)

6.17

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016943)

Species	Orthologous Gene IDs
malus_domestica	MD12G1060400.v1.1
rosa_chinensis	RchiOBHm_Chr3g0476251
rosa_laevigata	RLG00000023741
rosa_multiflora	Rmu_sc0000114.1_g000016 Rmu_sc0000288.1_g000012 Rmu_sc0023367.1_g000002
rosa_samantha	Rh3AG204200 Rh3AG208500 Rh3BG235500 Rh3BG241500 Rh3DG229800 Rh3DG229900 Rh4CG282100
rosa_wichuraiana	Rw3G018570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	710
AccII	CGCG	3 cut(s)	295, 483, 774
AciI	CCGC	5 cut(s)	73, 295, 464, 481, 774
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	264, 449
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	2 cut(s)	620, 635
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	6 cut(s)	173, 385, 397, 551, 571, 641
AjnI	CCWGG	2 cut(s)	30, 446
AloI	GAACNNNNNNTCC	2 cut(s)	522, 554
AluBI	AGCT	4 cut(s)	407, 424, 487, 496
AluI	AGCT	4 cut(s)	407, 424, 487, 496
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	2 cut(s)	233, 608
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	264, 449
ApeKI	GCWGC	2 cut(s)	424, 584
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	645
AspS9I	GGNCC	3 cut(s)	9, 34, 91
AsuHPI	GGTGA	3 cut(s)	107, 623, 780
AvaII	GGWCC	3 cut(s)	9, 34, 91
BalI	TGGCCA	2 cut(s)	266, 451
BanI	GGYRCC	1 cut(s)	710
BbsI	GAAGAC	2 cut(s)	538, 668
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	411, 571
BccI	CCATC	4 cut(s)	63, 120, 521, 745
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	32, 448
BclI	TGATCA	2 cut(s)	687, 814
BcoDI	GTCTC	2 cut(s)	233, 608
BfaI	CTAG	1 cut(s)	332
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	3 cut(s)	425, 465, 585
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	3 cut(s)	426, 466, 586
Bme1390I	CCNGG	2 cut(s)	32, 448
Bme18I	GGWCC	3 cut(s)	9, 34, 91
BmgT120I	GGNCC	3 cut(s)	9, 34, 91
BmiI	GGNNCC	3 cut(s)	36, 93, 712
BmrFI	CCNGG	2 cut(s)	32, 448
BmsI	GCATC	3 cut(s)	178, 220, 376
BpiI	GAAGAC	2 cut(s)	538, 668
Bpu1102I	GCTNAGC	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	32, 448
BseGI	GGATG	1 cut(s)	741
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	411, 571
BseYI	CCCAGC	1 cut(s)	723
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	3 cut(s)	295, 483, 774
BshFI	GGCC	2 cut(s)	266, 451
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	113, 311
BsmAI	GTCTC	2 cut(s)	233, 608
BsmFI	GGGAC	2 cut(s)	113, 311
BsnI	GGCC	2 cut(s)	266, 451
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	4 cut(s)	4, 303, 687, 814
Bsp1720I	GCTNAGC	1 cut(s)	403
BspACI	CCGC	5 cut(s)	73, 295, 464, 481, 774
BspANI	GGCC	2 cut(s)	266, 451
BspFNI	CGCG	3 cut(s)	295, 483, 774
BspHI	TCATGA	2 cut(s)	306, 826
BspLI	GGNNCC	3 cut(s)	36, 93, 712
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	710
BspTI	CTTAAG	1 cut(s)	488
BssMI	GATC	4 cut(s)	4, 303, 687, 814
Bst2UI	CCWGG	2 cut(s)	32, 448
Bst4CI	ACNGT	2 cut(s)	244, 715
Bst6I	CTCTTC	2 cut(s)	546, 651
BstAFI	CTTAAG	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	741
BstFNI	CGCG	3 cut(s)	295, 483, 774
BstKTI	GATC	4 cut(s)	7, 306, 690, 817
BstMAI	GTCTC	2 cut(s)	233, 608
BstMBI	GATC	4 cut(s)	4, 303, 687, 814
BstMWI	GCNNNNNNNGC	4 cut(s)	470, 493, 708, 717
BstNI	CCWGG	2 cut(s)	32, 448
BstSCI	CCNGG	2 cut(s)	30, 446
BstUI	CGCG	3 cut(s)	295, 483, 774
BstV1I	GCAGC	2 cut(s)	411, 571
BstV2I	GAAGAC	2 cut(s)	538, 668
BstXI	CCANNNNNNTGG	2 cut(s)	418, 798
BsuRI	GGCC	2 cut(s)	266, 451
BtsCI	GGATG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	2 cut(s)	306, 826
Cfr13I	GGNCC	3 cut(s)	9, 34, 91
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	2 cut(s)	619, 634
CviAII	CATG	8 cut(s)	307, 418, 520, 691, 703, 782, 818, 827
CviJI	RGCY	9 cut(s)	266, 402, 407, 424, 451, 467, 487, 496, 786
CviKI_1	RGCY	9 cut(s)	266, 402, 407, 424, 451, 467, 487, 496, 786
CviQI	GTAC	2 cut(s)	619, 634
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	4 cut(s)	6, 305, 689, 816
DpnII	GATC	4 cut(s)	4, 303, 687, 814
DraIII	CACNNNGTG	1 cut(s)	376
EaeI	YGGCCR	2 cut(s)	264, 449
Eam1104I	CTCTTC	2 cut(s)	546, 651
EarI	CTCTTC	2 cut(s)	546, 651
Eco47I	GGWCC	3 cut(s)	9, 34, 91
EcoO109I	RGGNCCY	2 cut(s)	34, 91
EcoRII	CCWGG	2 cut(s)	30, 446
FaeI	CATG	8 cut(s)	310, 421, 523, 694, 706, 785, 821, 830
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	113, 311
FatI	CATG	8 cut(s)	306, 417, 519, 690, 702, 781, 817, 826
FauI	CCCGC	2 cut(s)	288, 488
FauNDI	CATATG	1 cut(s)	589
FbaI	TGATCA	2 cut(s)	687, 814
Fnu4HI	GCNGC	3 cut(s)	425, 465, 585
FokI	GGATG	1 cut(s)	748
Fsp4HI	GCNGC	3 cut(s)	425, 465, 585
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	3 cut(s)	425, 465, 585
GsaI	CCCAGC	1 cut(s)	727
HaeIII	GGCC	2 cut(s)	266, 451
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	780
Hin1II	CATG	8 cut(s)	310, 421, 523, 694, 706, 785, 821, 830
HinfI	GANTC	4 cut(s)	214, 299, 310, 317
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	3 cut(s)	107, 623, 780
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	4 cut(s)	9, 60, 148, 253
Hpy188III	TCNNGA	5 cut(s)	307, 314, 332, 371, 827
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	2 cut(s)	81, 774
HpyAV	CCTTC	2 cut(s)	391, 771
HpyCH4III	ACNGT	2 cut(s)	244, 715
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	19, 191, 427, 473, 587, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	470, 493, 708, 717
HpyF3I	CTNAG	1 cut(s)	403
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	8 cut(s)	310, 421, 523, 694, 706, 785, 821, 830
Ksp22I	TGATCA	2 cut(s)	687, 814
Kzo9I	GATC	4 cut(s)	4, 303, 687, 814
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	2 cut(s)	411, 571
LweI	GCATC	3 cut(s)	178, 220, 376
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	15
MalI	GATC	4 cut(s)	6, 305, 689, 816
MboI	GATC	4 cut(s)	4, 303, 687, 814
MboII	GAAGA	8 cut(s)	368, 432, 435, 543, 563, 638, 668, 814
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	509
MlsI	TGGCCA	2 cut(s)	266, 451
MluCI	AATT	4 cut(s)	192, 205, 546, 822
MluNI	TGGCCA	2 cut(s)	266, 451
MlyI	GAGTC	2 cut(s)	293, 311
MnlI	CCTC	8 cut(s)	127, 189, 280, 382, 526, 654, 689, 802
Mox20I	TGGCCA	2 cut(s)	266, 451
MroXI	GAANNNNTTC	1 cut(s)	645
MscI	TGGCCA	2 cut(s)	266, 451
MseI	TTAA	2 cut(s)	489, 558
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	2 cut(s)	266, 451
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	32, 448
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	32, 448
MvnI	CGCG	3 cut(s)	295, 483, 774
MwoI	GCNNNNNNNGC	4 cut(s)	470, 493, 708, 717
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	4 cut(s)	4, 303, 687, 814
NlaIII	CATG	8 cut(s)	310, 421, 523, 694, 706, 785, 821, 830
NlaIV	GGNNCC	3 cut(s)	36, 93, 712
PagI	TCATGA	2 cut(s)	306, 826
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	2 cut(s)	214, 310
PkrI	GCNGC	3 cut(s)	426, 466, 586
PleI	GAGTC	2 cut(s)	293, 311
PpsI	GAGTC	2 cut(s)	293, 311
PpuMI	RGGWCCY	2 cut(s)	34, 91
PshBI	ATTAAT	1 cut(s)	558
Psp5II	RGGWCCY	2 cut(s)	34, 91
Psp6I	CCWGG	2 cut(s)	30, 446
PspFI	CCCAGC	1 cut(s)	723
PspGI	CCWGG	2 cut(s)	30, 446
PspN4I	GGNNCC	3 cut(s)	36, 93, 712
PspPI	GGNCC	3 cut(s)	9, 34, 91
PspPPI	RGGWCCY	2 cut(s)	34, 91
RsaI	GTAC	2 cut(s)	620, 635
RsaNI	GTAC	2 cut(s)	619, 634
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	489, 558
SatI	GCNGC	3 cut(s)	425, 465, 585
Sau3AI	GATC	4 cut(s)	4, 303, 687, 814
Sau96I	GGNCC	3 cut(s)	9, 34, 91
SchI	GAGTC	2 cut(s)	293, 311
ScrFI	CCNGG	2 cut(s)	32, 448
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	9 cut(s)	18, 138, 409, 426, 489, 498, 538, 646, 813
SfaNI	GCATC	3 cut(s)	178, 220, 376
SinI	GGWCC	3 cut(s)	9, 34, 91
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	180, 488
SmoI	CTYRAG	2 cut(s)	180, 488
Sse9I	AATT	4 cut(s)	192, 205, 546, 822
SsiI	CCGC	5 cut(s)	73, 295, 464, 481, 774
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	30, 446
TaaI	ACNGT	2 cut(s)	244, 715
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	4 cut(s)	302, 315, 762, 769
TasI	AATT	4 cut(s)	192, 205, 546, 822
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	2 cut(s)	214, 310
Tru1I	TTAA	2 cut(s)	489, 558
Tru9I	TTAA	2 cut(s)	489, 558
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	2 cut(s)	424, 584
TspDTI	ATGAA	5 cut(s)	339, 530, 606, 719, 815
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	3 cut(s)	9, 34, 91
VspI	ATTAAT	1 cut(s)	558
XbaI	TCTAGA	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.