Rh3DG229800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016943
Physical Location & Seq
Reverse (-)
21859623 .. 21870255
10633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG229800.1

Sequence Viewer

Length: 237 bp
ATGAAAGCAACTGTACTGTGGAATATACTCAAGTTAGACGATTTGTTGGGTCCTAACGGCAAGTATAAGCCAAACTCTTCATTTCAAGCCCAGGACTTGCTGAACGACATGGAAGTGAAGTATAAGGCCCCTCCCGATCAGGCTGAGGCCACCGAGCTCGACCCCAACGACGACGATAGCGATCTCGAAGAAGACGATCATGTGGGGCAGCAGAAATCTTCAAATAAAAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.74

Weight (kDa)

4.23

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 2 cut(s) 86, 222
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 1 cut(s) 159
AoxI GGCC 2 cut(s) 126, 147
ApeKI GCWGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 50, 127
AvaII GGWCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 92
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 50, 127
BmiI GGNNCC 2 cut(s) 51, 129
BmrFI CCNGG 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 2 cut(s) 128, 149
BsiHKAI GWGCWC 1 cut(s) 159
BsnI GGCC 2 cut(s) 128, 149
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 136, 181, 196
BspANI GGCC 2 cut(s) 128, 149
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 51, 129
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 136, 181, 196
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 13, 18
Bst6I CTCTTC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 144
BstKTI GATC 3 cut(s) 139, 184, 199
BstMBI GATC 3 cut(s) 136, 181, 196
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 2 cut(s) 128, 149
Cfr13I GGNCC 2 cut(s) 50, 127
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 109, 200
CviJI RGCY 6 cut(s) 70, 89, 128, 143, 149, 157
CviKI_1 RGCY 6 cut(s) 70, 89, 128, 143, 149, 157
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 138, 183, 198
DpnII GATC 3 cut(s) 136, 181, 196
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoO109I RGGNCCY 2 cut(s) 50, 127
EcoRII CCWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 2 cut(s) 112, 203
FaiI YATR 5 cut(s) 26, 66, 110, 123, 201
FatI CATG 2 cut(s) 108, 199
Fnu4HI GCNGC 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 209
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 128, 149
Hin1II CATG 2 cut(s) 112, 203
Hpy188III TCNNGA 2 cut(s) 134, 185
Hpy99I CGWCG 2 cut(s) 173, 176
HpyCH4III ACNGT 2 cut(s) 13, 18
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 2 cut(s) 112, 203
Kzo9I GATC 3 cut(s) 136, 181, 196
LpnPI CCDG 3 cut(s) 77, 104, 125
Lsp1109I GCAGC 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 138, 183, 198
MboI GATC 3 cut(s) 136, 181, 196
MboII GAAGA 4 cut(s) 69, 200, 203, 210
MhlI GDGCHC 1 cut(s) 159
MnlI CCTC 2 cut(s) 139, 141
MslI CAYNNNNRTG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NdeII GATC 3 cut(s) 136, 181, 196
NlaIII CATG 2 cut(s) 112, 203
NlaIV GGNNCC 2 cut(s) 51, 129
NmuCI GTSAC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 3 cut(s) 165, 177, 192
PkrI GCNGC 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 51, 129
PspPI GGNCC 2 cut(s) 50, 127
PspPPI RGGWCCY 1 cut(s) 50
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 159
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 3 cut(s) 136, 181, 196
Sau96I GGNCC 2 cut(s) 50, 127
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 159
SetI ASST 1 cut(s) 159
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 13, 18
TaqI TCGA 2 cut(s) 159, 186
TatI WGTACW 1 cut(s) 13
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 17, 69
VpaK11BI GGWCC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.