Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000288.1

Orthogroup ID

OG0016943

Physical Location & Seq

Genomic Coordinates Forward (+)

36611 .. 36955

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000288.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgatacgtgcactttgtgctgctggaaaagccgatgtggcaatggaattttacagggaaatggtacagaaggacattggacttgatatcaatatgtataagctgttattgaacggcatagctagctacggagatactgctgctgtgggcttggttttagatgacatgatgagagtctcacagattcctgaacacgtggtttatggttgtgtcctgaagtctttctgcatctctggcaaaatcagagaagctttggaatatatacgtgacctcaagaataaagaggttatgcttctccccgagtattttgagactttaattggtgaatggactatgcagggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

114

Amino Acids

12.87

Weight (kDa)

4.93

Isoelectric Point (pI)

3.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016943)

Species	Orthologous Gene IDs
malus_domestica	MD12G1060400.v1.1
rosa_chinensis	RchiOBHm_Chr3g0476251
rosa_laevigata	RLG00000023741
rosa_multiflora	Rmu_sc0000114.1_g000016 Rmu_sc0000288.1_g000012 Rmu_sc0023367.1_g000002
rosa_samantha	Rh3AG204200 Rh3AG208500 Rh3BG235500 Rh3BG241500 Rh3DG229800 Rh3DG229900 Rh4CG282100
rosa_wichuraiana	Rw3G018570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	236
AcvI	CACGTG	1 cut(s)	196
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	4 cut(s)	103, 122, 126, 251
AluI	AGCT	4 cut(s)	103, 122, 126, 251
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	181, 305
Alw44I	GTGCAC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	299
ApaLI	GTGCAC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	20, 140
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	13
BbrPI	CACGTG	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	7, 127
BceAI	ACGGC	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	181, 305
BfaI	CTAG	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	21, 141
BlsI	GCNGC	2 cut(s)	22, 142
BmeT110I	CYCGRG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	237
BmtI	GCTAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	3 cut(s)	8, 196, 266
Bse3DI	GCAATG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	7, 127
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	181, 305
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	13
BspOI	GCTAGC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstBAI	YACGTR	3 cut(s)	8, 196, 266
BstC8I	GCNNGC	1 cut(s)	124
BstMAI	GTCTC	2 cut(s)	181, 305
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 29, 38, 123, 234
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	7, 127
Cac8I	GCNNGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	7 cut(s)	32, 103, 122, 126, 150, 251, 342
CviKI_1	RGCY	7 cut(s)	32, 103, 122, 126, 150, 251, 342
CviQI	GTAC	1 cut(s)	65
DraIII	CACNNNGTG	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	236
Eco72I	CACGTG	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	88
FaeI	CATG	1 cut(s)	169
FaiI	YATR	9 cut(s)	95, 99, 119, 167, 204, 261, 263, 290, 335
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	21, 141
Fsp4HI	GCNGC	2 cut(s)	21, 141
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	2 cut(s)	21, 141
Hin1II	CATG	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	2 cut(s)	174, 184
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	3 cut(s)	188, 214, 274
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	64
HpyCH4IV	ACGT	3 cut(s)	7, 195, 265
HpyCH4V	TGCA	3 cut(s)	11, 228, 337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 29, 38, 123, 234
HpySE526I	ACGT	3 cut(s)	7, 195, 265
Hsp92II	CATG	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	9, 40, 201, 219, 227, 323
Lsp1109I	GCAGC	2 cut(s)	7, 127
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	3 cut(s)	7, 195, 265
MaeIII	GTNAC	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	47, 318
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	277, 281
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	317
MwoI	GCNNNNNNNGC	5 cut(s)	17, 29, 38, 123, 234
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	22, 142
PleI	GAGTC	1 cut(s)	182
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	182
Ppu21I	YACGTR	3 cut(s)	8, 196, 266
PspCI	CACGTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	2 cut(s)	21, 141
SchI	GAGTC	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	9 cut(s)	10, 105, 124, 128, 198, 253, 268, 273, 288
SfaNI	GCATC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	47, 318
SspMI	CTAG	1 cut(s)	123
TaiI	ACGT	3 cut(s)	10, 198, 268
TasI	AATT	2 cut(s)	47, 318
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	20, 140
Tsp45I	GTSAC	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	144
VneI	GTGCAC	1 cut(s)	9
XapI	RAATTY	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.