pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD12G1060400.v1.1 |
| rosa_chinensis | RchiOBHm_Chr3g0476251 |
| rosa_laevigata | RLG00000023741 |
| rosa_multiflora | Rmu_sc0000114.1_g000016 Rmu_sc0000288.1_g000012 Rmu_sc0023367.1_g000002 |
| rosa_samantha | Rh3AG204200 Rh3AG208500 Rh3BG235500 Rh3BG241500 Rh3DG229800 Rh3DG229900 Rh4CG282100 |
| rosa_wichuraiana | Rw3G018570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 419 |
| Acc36I | ACCTGC | 1 cut(s) | 419 |
| AcoI | YGGCCR | 1 cut(s) | 420 |
| AcsI | RAATTY | 1 cut(s) | 50 |
| AcuI | CTGAAG | 1 cut(s) | 248 |
| AcvI | CACGTG | 1 cut(s) | 208 |
| AdeI | CACNNNGTG | 2 cut(s) | 20, 347 |
| AflIII | ACRYGT | 2 cut(s) | 205, 447 |
| AgsI | TTSAA | 2 cut(s) | 115, 356 |
| AjnI | CCWGG | 1 cut(s) | 417 |
| AluBI | AGCT | 4 cut(s) | 106, 263, 378, 395 |
| AluI | AGCT | 4 cut(s) | 106, 263, 378, 395 |
| Alw21I | GWGCWC | 1 cut(s) | 16 |
| Alw26I | GTCTC | 1 cut(s) | 193 |
| Alw44I | GTGCAC | 1 cut(s) | 12 |
| AoxI | GGCC | 1 cut(s) | 420 |
| ApaLI | GTGCAC | 1 cut(s) | 12 |
| ApeKI | GCWGC | 3 cut(s) | 23, 134, 395 |
| ApoI | RAATTY | 1 cut(s) | 50 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 233, 273 |
| AsuHPI | GGTGA | 1 cut(s) | 443 |
| BaeGI | GKGCMC | 1 cut(s) | 16 |
| BalI | TGGCCA | 1 cut(s) | 422 |
| BanII | GRGCYC | 1 cut(s) | 146 |
| BbrPI | CACGTG | 1 cut(s) | 208 |
| Bbv12I | GWGCWC | 1 cut(s) | 16 |
| BbvI | GCAGC | 3 cut(s) | 10, 121, 382 |
| BceAI | ACGGC | 1 cut(s) | 133 |
| BciT130I | CCWGG | 1 cut(s) | 419 |
| BcoDI | GTCTC | 1 cut(s) | 193 |
| BfaI | CTAG | 2 cut(s) | 303, 312 |
| BfuAI | ACCTGC | 1 cut(s) | 419 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 41 |
| BisI | GCNGC | 3 cut(s) | 24, 135, 396 |
| BlpI | GCTNAGC | 1 cut(s) | 374 |
| BlsI | GCNGC | 3 cut(s) | 25, 136, 397 |
| Bme1390I | CCNGG | 1 cut(s) | 419 |
| BmrFI | CCNGG | 1 cut(s) | 419 |
| BmsI | GCATC | 1 cut(s) | 249 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 374 |
| BpuEI | CTTGAG | 1 cut(s) | 269 |
| BsaAI | YACGTR | 1 cut(s) | 208 |
| Bse3DI | GCAATG | 1 cut(s) | 51 |
| BseBI | CCWGG | 1 cut(s) | 419 |
| BseMI | GCAATG | 1 cut(s) | 51 |
| BseSI | GKGCMC | 1 cut(s) | 16 |
| BseXI | GCAGC | 3 cut(s) | 10, 121, 382 |
| BsgI | GTGCAG | 1 cut(s) | 381 |
| BshFI | GGCC | 1 cut(s) | 422 |
| BsiHKAI | GWGCWC | 1 cut(s) | 16 |
| BsmAI | GTCTC | 1 cut(s) | 193 |
| BsnI | GGCC | 1 cut(s) | 422 |
| Bsp1286I | GDGCHC | 2 cut(s) | 16, 146 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 374 |
| BspANI | GGCC | 1 cut(s) | 422 |
| BspMI | ACCTGC | 1 cut(s) | 419 |
| BsrDI | GCAATG | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 1 cut(s) | 419 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 20 |
| BstBAI | YACGTR | 1 cut(s) | 208 |
| BstDEI | CTNAG | 1 cut(s) | 374 |
| BstMAI | GTCTC | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 20, 32, 41, 246 |
| BstNI | CCWGG | 1 cut(s) | 419 |
| BstNSI | RCATGY | 1 cut(s) | 451 |
| BstSCI | CCNGG | 1 cut(s) | 417 |
| BstSLI | GKGCMC | 1 cut(s) | 16 |
| BstV1I | GCAGC | 3 cut(s) | 10, 121, 382 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 389 |
| BsuRI | GGCC | 1 cut(s) | 422 |
| BveI | ACCTGC | 1 cut(s) | 419 |
| CviAII | CATG | 2 cut(s) | 160, 448 |
| DdeI | CTNAG | 1 cut(s) | 374 |
| DraI | TTTAAA | 1 cut(s) | 367 |
| DraIII | CACNNNGTG | 2 cut(s) | 20, 347 |
| EaeI | YGGCCR | 1 cut(s) | 420 |
| Eco24I | GRGCYC | 1 cut(s) | 146 |
| Eco32I | GATATC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 1 cut(s) | 248 |
| Eco72I | CACGTG | 1 cut(s) | 208 |
| EcoRII | CCWGG | 1 cut(s) | 417 |
| EcoRV | GATATC | 1 cut(s) | 91 |
| EcoT38I | GRGCYC | 1 cut(s) | 146 |
| FaeI | CATG | 2 cut(s) | 163, 451 |
| FaiI | YATR | 8 cut(s) | 10, 98, 102, 161, 216, 273, 390, 449 |
| FatI | CATG | 2 cut(s) | 159, 447 |
| Fnu4HI | GCNGC | 3 cut(s) | 24, 135, 396 |
| FriOI | GRGCYC | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 3 cut(s) | 24, 135, 396 |
| FspBI | CTAG | 2 cut(s) | 303, 312 |
| GluI | GCNGC | 3 cut(s) | 24, 135, 396 |
| HaeIII | GGCC | 1 cut(s) | 422 |
| Hin1II | CATG | 2 cut(s) | 163, 451 |
| HindIII | AAGCTT | 1 cut(s) | 261 |
| HinfI | GANTC | 2 cut(s) | 186, 196 |
| HphI | GGTGA | 1 cut(s) | 443 |
| Hpy166II | GTNNAC | 1 cut(s) | 14 |
| Hpy188I | TCNGA | 1 cut(s) | 257 |
| Hpy188III | TCNNGA | 7 cut(s) | 200, 226, 278, 286, 303, 443, 454 |
| Hpy8I | GTNNAC | 1 cut(s) | 14 |
| HpyAV | CCTTC | 1 cut(s) | 67 |
| HpyCH4IV | ACGT | 2 cut(s) | 207, 386 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 240, 398 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 20, 32, 41, 246 |
| HpyF3I | CTNAG | 1 cut(s) | 374 |
| HpySE526I | ACGT | 2 cut(s) | 207, 386 |
| Hsp92II | CATG | 2 cut(s) | 163, 451 |
| LmnI | GCTCC | 1 cut(s) | 392 |
| LpnPI | CCDG | 9 cut(s) | 12, 213, 231, 239, 293, 404, 414, 428, 431 |
| Lsp1109I | GCAGC | 3 cut(s) | 10, 121, 382 |
| LweI | GCATC | 1 cut(s) | 249 |
| MaeI | CTAG | 2 cut(s) | 303, 312 |
| MaeII | ACGT | 2 cut(s) | 207, 386 |
| MaeIII | GTNAC | 1 cut(s) | 278 |
| MboII | GAAGA | 2 cut(s) | 339, 406 |
| MhlI | GDGCHC | 2 cut(s) | 16, 146 |
| MlsI | TGGCCA | 1 cut(s) | 422 |
| MluCI | AATT | 1 cut(s) | 50 |
| MluNI | TGGCCA | 1 cut(s) | 422 |
| MlyI | GAGTC | 1 cut(s) | 195 |
| MnlI | CCTC | 3 cut(s) | 293, 349, 353 |
| Mox20I | TGGCCA | 1 cut(s) | 422 |
| MroXI | GAANNNNTTC | 2 cut(s) | 233, 273 |
| MscI | TGGCCA | 1 cut(s) | 422 |
| MseI | TTAA | 1 cut(s) | 366 |
| Msp20I | TGGCCA | 1 cut(s) | 422 |
| MspR9I | CCNGG | 1 cut(s) | 419 |
| MvaI | CCWGG | 1 cut(s) | 419 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 20, 32, 41, 246 |
| NlaIII | CATG | 2 cut(s) | 163, 451 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| NspI | RCATGY | 1 cut(s) | 451 |
| PaqCI | CACCTGC | 1 cut(s) | 419 |
| PciI | ACATGT | 1 cut(s) | 447 |
| PdmI | GAANNNNTTC | 2 cut(s) | 233, 273 |
| PfeI | GAWTC | 1 cut(s) | 196 |
| PkrI | GCNGC | 3 cut(s) | 25, 136, 397 |
| PleI | GAGTC | 1 cut(s) | 194 |
| PmaCI | CACGTG | 1 cut(s) | 208 |
| PmlI | CACGTG | 1 cut(s) | 208 |
| PpsI | GAGTC | 1 cut(s) | 194 |
| Ppu21I | YACGTR | 1 cut(s) | 208 |
| PscI | ACATGT | 1 cut(s) | 447 |
| Psp6I | CCWGG | 1 cut(s) | 417 |
| PspCI | CACGTG | 1 cut(s) | 208 |
| PspGI | CCWGG | 1 cut(s) | 417 |
| SaqAI | TTAA | 1 cut(s) | 366 |
| SatI | GCNGC | 3 cut(s) | 24, 135, 396 |
| SchI | GAGTC | 1 cut(s) | 195 |
| ScrFI | CCNGG | 1 cut(s) | 419 |
| SduI | GDGCHC | 2 cut(s) | 16, 146 |
| SetI | ASST | 8 cut(s) | 108, 210, 265, 285, 380, 389, 397, 433 |
| SfaNI | GCATC | 1 cut(s) | 249 |
| SmlI | CTYRAG | 2 cut(s) | 284, 454 |
| SmoI | CTYRAG | 2 cut(s) | 284, 454 |
| Sse9I | AATT | 1 cut(s) | 50 |
| SspMI | CTAG | 2 cut(s) | 303, 312 |
| StyD4I | CCNGG | 1 cut(s) | 417 |
| TaiI | ACGT | 2 cut(s) | 210, 389 |
| TasI | AATT | 1 cut(s) | 50 |
| TfiI | GAWTC | 1 cut(s) | 196 |
| Tru1I | TTAA | 1 cut(s) | 366 |
| Tru9I | TTAA | 1 cut(s) | 366 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 3 cut(s) | 23, 134, 395 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 1 cut(s) | 310 |
| VneI | GTGCAC | 1 cut(s) | 12 |
| XapI | RAATTY | 1 cut(s) | 50 |
| XbaI | TCTAGA | 1 cut(s) | 302 |
| XceI | RCATGY | 1 cut(s) | 451 |
| XmnI | GAANNNNTTC | 2 cut(s) | 233, 273 |
| XspI | CTAG | 2 cut(s) | 303, 312 |