Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016943

Physical Location & Seq

Genomic Coordinates Reverse (-)

22747874 .. 22748927

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG241500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATGATATGTGCACTTTGTGCTGCTGGAAAAGCCGATGTGGCAATGGAATTTGACAAGGAAATGGTACAGAAGGACATTGGACTTGATATCAATATGTATAAGCTGTTATTGAACGGCATAGCTAGCTATGGAGATACTGCTGCTGTGGGCTCGGTTTTAGATGACATGATGAGAGTCTCACAGATTCCTGAACACGTGGTTTATGGGTGTGTCCTGAAGTCTTTCTGCATCTCTGGCAAAATCAGAGAAGCTTTGGAATATATTCGTGACCTCAAGAATAAAGAGGAAGCGGCGCTTGCAAAAAACTTTGTGGTGTCTTCTAGGGGGCAAGGCATTGAAGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

116

Amino Acids

12.7

Weight (kDa)

5.01

Isoelectric Point (pI)

10.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016943)

Species	Orthologous Gene IDs
malus_domestica	MD12G1060400.v1.1
rosa_chinensis	RchiOBHm_Chr3g0476251
rosa_laevigata	RLG00000023741
rosa_multiflora	Rmu_sc0000114.1_g000016 Rmu_sc0000288.1_g000012 Rmu_sc0023367.1_g000002
rosa_samantha	Rh3AG204200 Rh3AG208500 Rh3BG235500 Rh3BG241500 Rh3DG229800 Rh3DG229900 Rh4CG282100
rosa_wichuraiana	Rw3G018570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	199
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	115, 341, 347
AluBI	AGCT	4 cut(s)	106, 125, 129, 254
AluI	AGCT	4 cut(s)	106, 125, 129, 254
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	184
Alw44I	GTGCAC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	23, 143
ApoI	RAATTY	1 cut(s)	50
Asp700I	GAANNNNTTC	2 cut(s)	224, 264
AspLEI	GCGC	1 cut(s)	298
AsuNHI	GCTAGC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	10, 130
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	2 cut(s)	126, 324
BfoI	RGCGCY	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	24, 144, 294
BlsI	GCNGC	3 cut(s)	25, 145, 295
BmsI	GCATC	1 cut(s)	240
BmtI	GCTAGC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	10, 130
BsiHKAI	GWGCWC	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	16, 155
BspACI	CCGC	1 cut(s)	293
BspOI	GCTAGC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	127, 300
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 32, 41, 126, 237, 299
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	10, 130
BstV2I	GAAGAC	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	127, 300
CfoI	GCGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	6 cut(s)	35, 106, 125, 129, 153, 254
CviKI_1	RGCY	6 cut(s)	35, 106, 125, 129, 153, 254
CviQI	GTAC	1 cut(s)	68
DraIII	CACNNNGTG	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	239
Eco72I	CACGTG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	155
FaeI	CATG	1 cut(s)	172
FaiI	YATR	8 cut(s)	10, 98, 102, 122, 132, 170, 207, 264
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	24, 144, 294
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	24, 144, 294
FspBI	CTAG	2 cut(s)	126, 324
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	24, 144, 294
HaeII	RGCGCY	1 cut(s)	299
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	177, 187
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	4 cut(s)	191, 217, 269, 277
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	14, 231, 302
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 32, 41, 126, 237, 299
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	296
LpnPI	CCDG	4 cut(s)	12, 204, 222, 230
Lsp1109I	GCAGC	2 cut(s)	10, 130
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	126, 324
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	269
MboII	GAAGA	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	16, 155
MluCI	AATT	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	2 cut(s)	280, 284
MroXI	GAANNNNTTC	2 cut(s)	224, 264
MwoI	GCNNNNNNNGC	6 cut(s)	20, 32, 41, 126, 237, 299
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	269
PdmI	GAANNNNTTC	2 cut(s)	224, 264
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	25, 145, 295
PleI	GAGTC	1 cut(s)	185
PmaCI	CACGTG	1 cut(s)	199
PmlI	CACGTG	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	199
PspCI	CACGTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SatI	GCNGC	3 cut(s)	24, 144, 294
SchI	GAGTC	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	16, 155
SetI	ASST	6 cut(s)	108, 127, 131, 201, 256, 276
SfaNI	GCATC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	2 cut(s)	126, 324
TaiI	ACGT	1 cut(s)	201
TasI	AATT	1 cut(s)	50
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	23, 143
Tsp45I	GTSAC	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	50
XmnI	GAANNNNTTC	2 cut(s)	224, 264
XspI	CTAG	2 cut(s)	126, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.