Rh4CG282100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016943
Physical Location & Seq
Reverse (-)
53985814 .. 53988076
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG282100.1

Sequence Viewer

Length: 243 bp
ATGAAAACAATTTACAAGGAAATAGTCCATGAATCCAGAGCAATCCCACCGCCATTGATTGGAAGAGATGTTGTCGAAAGCGACTCTCTCCACTCTCTCCAGGCCCCTCCCGATCAGGCTGAGGCAGCCGAGCTCGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGCTGCTAAAGTTTCCAGCTCCAATGATCATGTGGGGCAGCAGAAATCTTCAAATAAAAGTGACTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.61

Weight (kDa)

4.38

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 59
AciI CCGC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 222
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 2 cut(s) 133, 189
AluI AGCT 2 cut(s) 133, 189
Alw21I GWGCWC 1 cut(s) 135
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 125, 173, 208
AspS9I GGNCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 137, 160, 220
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 1 cut(s) 196
BisI GCNGC 3 cut(s) 126, 174, 209
BlsI GCNGC 3 cut(s) 127, 175, 210
Bme1390I CCNGG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 3 cut(s) 137, 160, 220
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 3 cut(s) 112, 157, 196
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 105
BssMI GATC 3 cut(s) 112, 157, 196
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 3 cut(s) 115, 160, 199
BstMBI GATC 3 cut(s) 112, 157, 196
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 137, 160, 220
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 2 cut(s) 29, 200
CviJI RGCY 5 cut(s) 104, 119, 128, 133, 189
CviKI_1 RGCY 5 cut(s) 104, 119, 128, 133, 189
DdeI CTNAG 1 cut(s) 120
DpnI GATC 3 cut(s) 114, 159, 198
DpnII GATC 3 cut(s) 112, 157, 196
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 2 cut(s) 32, 203
FaiI YATR 2 cut(s) 30, 201
FatI CATG 2 cut(s) 28, 199
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 126, 174, 209
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 126, 174, 209
GluI GCNGC 3 cut(s) 126, 174, 209
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 1 cut(s) 104
HgaI GACGC 1 cut(s) 179
Hin1II CATG 2 cut(s) 32, 203
HinfI GANTC 3 cut(s) 32, 83, 233
Hpy188III TCNNGA 3 cut(s) 36, 110, 161
Hpy99I CGWCG 2 cut(s) 149, 152
HpyCH4III ACNGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 2 cut(s) 32, 203
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 112, 157, 196
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 5 cut(s) 49, 86, 101, 113, 199
Lsp1109I GCAGC 3 cut(s) 137, 160, 220
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 114, 159, 198
MboI GATC 3 cut(s) 112, 157, 196
MboII GAAGA 4 cut(s) 75, 176, 179, 210
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 2 cut(s) 9, 237
MlyI GAGTC 2 cut(s) 77, 227
MnlI CCTC 2 cut(s) 115, 117
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 3 cut(s) 112, 157, 196
NlaIII CATG 2 cut(s) 32, 203
NlaIV GGNNCC 1 cut(s) 105
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 153
PfeI GAWTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 3 cut(s) 127, 175, 210
PleI GAGTC 2 cut(s) 77, 227
PpsI GAGTC 2 cut(s) 77, 227
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 135
SatI GCNGC 3 cut(s) 126, 174, 209
Sau3AI GATC 3 cut(s) 112, 157, 196
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 2 cut(s) 77, 227
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 135
SetI ASST 2 cut(s) 135, 191
Sse9I AATT 2 cut(s) 9, 237
SsiI CCGC 1 cut(s) 50
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 3 cut(s) 75, 135, 162
TasI AATT 2 cut(s) 9, 237
TfiI GAWTC 1 cut(s) 32
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 125, 173, 208
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 17, 45
Van91I CCANNNNNTGG 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.