Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023367.1

Orthogroup ID

OG0016943

Physical Location & Seq

Genomic Coordinates Forward (+)

9443 .. 9766

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023367.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgacgatatgtgcactttgtgctgctggaaaagccgatgtggcaatggaatttgacaaggaaatggtagagaaggacattggacttgatatcaatatgtataagctgttattgaacggctgtggagatactgctgctgtgggctcggttttagatgacatgatgagagtgatgagagtctcacagattcctgaacacgtggtttatgggtgtgtcctgaagtctttctgcatctctggcaaaatcagagaagctttggaatatattcgtgacctcaagaataaagaggtactatgcttctccccgagtattttgagactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

107

Amino Acids

11.87

Weight (kDa)

5.34

Isoelectric Point (pI)

13.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016943)

Species	Orthologous Gene IDs
malus_domestica	MD12G1060400.v1.1
rosa_chinensis	RchiOBHm_Chr3g0476251
rosa_laevigata	RLG00000023741
rosa_multiflora	Rmu_sc0000114.1_g000016 Rmu_sc0000288.1_g000012 Rmu_sc0023367.1_g000002
rosa_samantha	Rh3AG204200 Rh3AG208500 Rh3BG235500 Rh3BG241500 Rh3DG229800 Rh3DG229900 Rh4CG282100
rosa_wichuraiana	Rw3G018570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	199
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	2 cut(s)	106, 254
AluI	AGCT	2 cut(s)	106, 254
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	184, 310
Alw44I	GTGCAC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	304
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	23, 134
ApoI	RAATTY	1 cut(s)	50
Asp700I	GAANNNNTTC	2 cut(s)	224, 264
AvaI	CYCGRG	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	10, 121
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	184, 310
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	24, 135
BlsI	GCNGC	2 cut(s)	25, 136
BmeT110I	CYCGRG	1 cut(s)	304
BmsI	GCATC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	10, 121
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	184, 310
BsoBI	CYCGRG	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	16, 146
BsrDI	GCAATG	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	184, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 32, 41, 237
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	10, 121
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	5 cut(s)	35, 106, 120, 144, 254
CviKI_1	RGCY	5 cut(s)	35, 106, 120, 144, 254
CviQI	GTAC	1 cut(s)	290
DraIII	CACNNNGTG	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	239
Eco72I	CACGTG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	146
FaeI	CATG	1 cut(s)	163
FaiI	YATR	7 cut(s)	10, 98, 102, 161, 207, 264, 295
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	24, 135
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	24, 135
GluI	GCNGC	2 cut(s)	24, 135
Hin1II	CATG	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	177, 187
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	4 cut(s)	191, 217, 269, 277
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	14, 231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 32, 41, 237
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	12, 204, 222, 230
Lsp1109I	GCAGC	2 cut(s)	10, 121
LweI	GCATC	1 cut(s)	240
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	269
MhlI	GDGCHC	2 cut(s)	16, 146
MluCI	AATT	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	2 cut(s)	280, 284
MroXI	GAANNNNTTC	2 cut(s)	224, 264
MseI	TTAA	1 cut(s)	322
MwoI	GCNNNNNNNGC	4 cut(s)	20, 32, 41, 237
NlaIII	CATG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	269
PdmI	GAANNNNTTC	2 cut(s)	224, 264
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	25, 136
PleI	GAGTC	1 cut(s)	185
PmaCI	CACGTG	1 cut(s)	199
PmlI	CACGTG	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	199
PspCI	CACGTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	2 cut(s)	24, 135
SchI	GAGTC	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	16, 146
SetI	ASST	5 cut(s)	108, 201, 256, 276, 291
SfaNI	GCATC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	201
TasI	AATT	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	23, 134
Tsp45I	GTSAC	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	50
XmnI	GAANNNNTTC	2 cut(s)	224, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.