Rmu_sc0000120.1_g000006

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000120.1
OG0005969
Physical Location & Seq
Forward (+)
20282 .. 23445
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
atggaagtggatggaggaagaatcttaaaagtatctagtggtgctcaatctataccacgacattccagaaaacataaggctttctatcaatttactcagcagagtctccctgcttgtaaacctgtcctcacaccagcatgggtgattactacatttttattgatgggtgtcattttcatacctattgggcttattactcttcatgcctctgagaatgttgttgaaatagtggaccgatatgatactgaatgtgtcccagaagcattcagaagcaataaggtggcatatatcaaagataactcgattcccaaaaactgttctcggtacttgaaggtctacaagcatatgaaagctccaataaatatctactatcagcttgataactactttcagaaccacagacagtatgtcaaaagtaaaaatgatcgacagcttttacatggattggggtacaatgacacaggctcctgtaaacctgaggagtccaacaatggtctttcaattgttccttgtggtttaatagcatggagtttgtttaatgatacatatactcttattcgtggaagatcagagttaaaggtcaacaggaagaacatagcatggaagagtgaccgtgatcacaagtttgggaagggtgtatatcccttcaattttcagaacggcaccttgatgggtggtggaaagctacacccaagaatccctctaagcgatcaagaagatcttattgtatggatgcggacagctgcgctccccagtttccaagcttattctttcaacaacaggctggttaggaggaaagaacaacttccttgggcttgcctgcacttctgttggttcaagttccatattcatctctattgtcttcttgctgctccacatgaaaaatcccaggattctataattgctgaaatgggttaccttctcaagtttgccctgctggctgtcagactcattcggcactgtagggaaacaactttttggtacatcttggaacaacaaaagcatgtccagttgaagaggcgatggtactatatgcgtagtttggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

349

Amino Acids

40.75

Weight (kDa)

9.58

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 67 - 256 3.2e-50 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 662
AccI GTMKAC 1 cut(s) 336
AciI CCGC 1 cut(s) 736
AfaI GTAC 4 cut(s) 326, 452, 983, 1028
AgsI TTSAA 7 cut(s) 224, 331, 501, 649, 775, 838, 1015
AhdI GACNNNNNGTC 1 cut(s) 407
AjnI CCWGG 1 cut(s) 888
AluBI AGCT 6 cut(s) 353, 376, 433, 685, 743, 764
AluI AGCT 6 cut(s) 353, 376, 433, 685, 743, 764
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 743, 869
Asp700I GAANNNNTTC 1 cut(s) 804
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 477
BanI GGYRCC 1 cut(s) 662
BbsI GAAGAC 1 cut(s) 854
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 730, 856
BccI CCATC 4 cut(s) 5, 157, 664, 1017
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 1 cut(s) 890
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 961
BglI GCCNNNNNGGC 1 cut(s) 938
BglII AGATCT 1 cut(s) 718
BisI GCNGC 2 cut(s) 744, 870
BlsI GCNGC 2 cut(s) 745, 871
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 466, 664
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 1 cut(s) 723
BmuI ACTGGG 1 cut(s) 747
BpiI GAAGAC 1 cut(s) 854
BpuEI CTTGAG 1 cut(s) 908
BsaJI CCNNGG 2 cut(s) 809, 888
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bse1I ACTGG 2 cut(s) 753, 1009
Bse21I CCTNAGG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 890
BseDI CCNNGG 2 cut(s) 809, 888
BseGI GGATG 2 cut(s) 16, 738
BseMII CTCAG 3 cut(s) 110, 201, 468
BseNI ACTGG 2 cut(s) 753, 1009
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 730, 856
BsgI GTGCAG 1 cut(s) 806
BshNI GGYRCC 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 46
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 5 cut(s) 424, 566, 616, 709, 718
BspACI CCGC 1 cut(s) 736
BspCNI CTCAG 3 cut(s) 109, 202, 469
BspLI GGNNCC 2 cut(s) 466, 664
BspT107I GGYRCC 1 cut(s) 662
BsrI ACTGG 2 cut(s) 753, 1009
BssECI CCNNGG 2 cut(s) 809, 888
BssMI GATC 5 cut(s) 424, 566, 616, 709, 718
BssT1I CCWWGG 1 cut(s) 809
Bst2UI CCWGG 1 cut(s) 890
Bst4CI ACNGT 4 cut(s) 317, 405, 614, 962
Bst6I CTCTTC 3 cut(s) 204, 599, 1010
BstC8I GCNNGC 3 cut(s) 817, 821, 939
BstDEI CTNAG 4 cut(s) 96, 210, 477, 704
BstEII GGTNACC 1 cut(s) 914
BstF5I GGATG 2 cut(s) 16, 738
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 5 cut(s) 427, 569, 619, 712, 721
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 5 cut(s) 424, 566, 616, 709, 718
BstMWI GCNNNNNNNGC 1 cut(s) 938
BstNI CCWGG 1 cut(s) 890
BstNSI RCATGY 1 cut(s) 1007
BstPI GGTNACC 1 cut(s) 914
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 1 cut(s) 961
BstV1I GCAGC 2 cut(s) 730, 856
BstV2I GAAGAC 1 cut(s) 854
BstX2I RGATCY 1 cut(s) 718
BstYI RGATCY 1 cut(s) 718
Bsu36I CCTNAGG 1 cut(s) 477
BtgZI GCGATG 1 cut(s) 1036
BtsCI GGATG 2 cut(s) 16, 738
BtsIMutI CAGTG 1 cut(s) 958
Cac8I GCNNGC 3 cut(s) 817, 821, 939
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 4 cut(s) 325, 451, 982, 1027
CviAII CATG 7 cut(s) 138, 203, 440, 525, 600, 878, 1004
CviQI GTAC 4 cut(s) 325, 451, 982, 1027
DdeI CTNAG 4 cut(s) 96, 210, 477, 704
DpnI GATC 5 cut(s) 426, 568, 618, 711, 720
DpnII GATC 5 cut(s) 424, 566, 616, 709, 718
DriI GACNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 3 cut(s) 204, 599, 1010
Eam1105I GACNNNNNGTC 1 cut(s) 407
EarI CTCTTC 3 cut(s) 204, 599, 1010
Eco130I CCWWGG 1 cut(s) 809
Eco47I GGWCC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 477
Eco91I GGTNACC 1 cut(s) 914
EcoO65I GGTNACC 1 cut(s) 914
EcoRII CCWGG 1 cut(s) 888
EcoT14I CCWWGG 1 cut(s) 809
ErhI CCWWGG 1 cut(s) 809
FaeI CATG 7 cut(s) 141, 206, 443, 528, 603, 881, 1007
FalI AAGNNNNNCTT 4 cut(s) 705, 737, 789, 821
FaqI GGGAC 1 cut(s) 239
FatI CATG 7 cut(s) 137, 202, 439, 524, 599, 877, 1003
FauNDI CATATG 1 cut(s) 345
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 744, 870
FokI GGATG 2 cut(s) 23, 745
Fsp4HI GCNGC 2 cut(s) 744, 870
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 747
GluI GCNGC 2 cut(s) 744, 870
HhaI GCGC 1 cut(s) 748
Hin1II CATG 7 cut(s) 141, 206, 443, 528, 603, 881, 1007
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 762
HinfI GANTC 7 cut(s) 21, 103, 304, 482, 696, 893, 948
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 5 cut(s) 119, 232, 337, 473, 583
Hpy188I TCNGA 6 cut(s) 211, 269, 393, 571, 657, 947
Hpy188III TCNNGA 2 cut(s) 66, 713
Hpy8I GTNNAC 5 cut(s) 119, 232, 337, 473, 583
HpyAV CCTTC 4 cut(s) 325, 625, 655, 929
HpyCH4III ACNGT 4 cut(s) 317, 405, 614, 962
HpyCH4V TGCA 1 cut(s) 823
HpyF10VI GCNNNNNNNGC 1 cut(s) 938
HpyF3I CTNAG 4 cut(s) 96, 210, 477, 704
Hsp92II CATG 7 cut(s) 141, 206, 443, 528, 603, 881, 1007
HspAI GCGC 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 5 cut(s) 424, 566, 616, 709, 718
LmnI GCTCC 4 cut(s) 358, 470, 753, 877
Lsp1109I GCAGC 2 cut(s) 730, 856
LweI GCATC 1 cut(s) 723
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 608, 914
MalI GATC 5 cut(s) 426, 568, 618, 711, 720
MboI GATC 5 cut(s) 424, 566, 616, 709, 718
MboII GAAGA 8 cut(s) 30, 191, 576, 601, 616, 728, 854, 1027
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 89, 501, 649, 900
MlyI GAGTC 3 cut(s) 112, 491, 942
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 7 cut(s) 8, 137, 217, 472, 711, 786, 1011
MroXI GAANNNNTTC 1 cut(s) 804
MseI TTAA 4 cut(s) 26, 518, 537, 575
MslI CAYNNNNRTG 2 cut(s) 136, 668
MspA1I CMGCKG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 890
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 890
MwoI GCNNNNNNNGC 1 cut(s) 938
NdeI CATATG 1 cut(s) 345
NdeII GATC 5 cut(s) 424, 566, 616, 709, 718
NlaIII CATG 7 cut(s) 141, 206, 443, 528, 603, 881, 1007
NlaIV GGNNCC 2 cut(s) 466, 664
NmuCI GTSAC 1 cut(s) 608
NspI RCATGY 1 cut(s) 1007
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 804
PfeI GAWTC 4 cut(s) 21, 304, 696, 893
PkrI GCNGC 2 cut(s) 745, 871
PleI GAGTC 3 cut(s) 111, 490, 942
PpsI GAGTC 3 cut(s) 111, 490, 942
Psp6I CCWGG 1 cut(s) 888
PspEI GGTNACC 1 cut(s) 914
PspGI CCWGG 1 cut(s) 888
PspN4I GGNNCC 2 cut(s) 466, 664
PspPI GGNCC 1 cut(s) 232
PsuI RGATCY 1 cut(s) 718
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 4 cut(s) 326, 452, 983, 1028
RsaNI GTAC 4 cut(s) 325, 451, 982, 1027
RseI CAYNNNNRTG 2 cut(s) 136, 668
SaqAI TTAA 4 cut(s) 26, 518, 537, 575
SatI GCNGC 2 cut(s) 744, 870
Sau3AI GATC 5 cut(s) 424, 566, 616, 709, 718
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 3 cut(s) 112, 491, 942
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 1 cut(s) 961
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 136, 668
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
Sse9I AATT 4 cut(s) 89, 501, 649, 900
SsiI CCGC 1 cut(s) 736
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 1 cut(s) 809
TaaI ACNGT 4 cut(s) 317, 405, 614, 962
TaqI TCGA 2 cut(s) 302, 427
TaqII GACCGA 1 cut(s) 249
TasI AATT 4 cut(s) 89, 501, 649, 900
TfiI GAWTC 4 cut(s) 21, 304, 696, 893
Tru1I TTAA 4 cut(s) 26, 518, 537, 575
Tru9I TTAA 4 cut(s) 26, 518, 537, 575
TscAI CASTG 1 cut(s) 965
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 2 cut(s) 743, 869
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 5 cut(s) 166, 191, 362, 839, 894
TspRI CASTG 1 cut(s) 965
VpaK11BI GGWCC 1 cut(s) 232
XceI RCATGY 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.