Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000308.1

Orthogroup ID

OG0005238

Physical Location & Seq

Genomic Coordinates Forward (+)

198979 .. 207404

Gene Structure 8426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5691 bp

atggtgaaatcatggatcccttggcgatctgagccggctaatgtttcgagggatttttggatgcctgatgatagctgtagggtatgttatgagtgtgatgcacagttcactgtatttaaccgtaaacatcattgtagactttgtggacgagttttctgtgccaagtgtacagaaaactcaattcctgccccctctggtgactcaaggatagatcgggaagagagggaaaggattcgtgtctgcaatttttgttacaagcaacaacagcaaggcatagctgctactcctgataatggaacacagattgctaatctagatcttagtacctcaccatcagaaacaagttttactagctttaagtcatgcgccactggtaacagcagtagctttactcttaactcaatcccgtactcaactgggccataccaacgacttcaaaacagttctggtcttagcccctgtcaatcatctcccatgaaaacaagctcagaaaagcacagcaaatatgcctcctggaggaccaatgattttgttgcagatataggggattcatctccaaatcattatgagacttcaacaaccaggtttatatctcttttgtgcttgagcactggtaacagcagtagctttactcttaactcaatcccgtactcaactgggccataccaacgacttcaaaacagttctggtcttagcccctgccaatcatctcccatgaaaacaagctcagaaaagcacagcaaatatgcctcctggaggaccaatgattttgttgcagatataggggattcatctccaaatcattatgagatttcaacaaccagcatcaggagtgatgacgacgatgttgactatgggacatatcagtcagattctaagaattattctcaagtcaatgattactatggtcatgttgagttttatgagatgagcaatcatgatgaatcacataaagtgcaacttgatggtgaaaacattgatgcaaagcatttaagcagctccccgttgcttcacagttttaactcgcagggttcggatccaccacttgaaaagaaagaagatgaacatgatatgggtgatgaatgtgcttcctctttatgttctgctggggatgttgacgtagaacctgtggattttgagaacaatgcccttctttggcttccccctgaaccagaagatgaagaagatgaaagggaaactgttcttcttgatgatgacgatgatggtgatgctgcaggagagtggggaaccttacgcacatcaagcagttttggcagcggggagtctcgcaatagggatcgatcaggtgaggagcataagaaggtgatgaagaatgtggttgatgggcactttagggctttggtagctcagctattgcaggttgagaacctccctgtaggccaggaaggtgaaaatgaaagttggttggagatcattacgtatctgtcttgggaggctgctacactgttaaagccagatatgagcaaaggtggagggatggatcctggtggttatgtaaaagtaaaatgcatagcttctggacgcccctctgacagtatggtggtcaaaggagttgtctgtaagaaaaatgtggctcatcgacgaatggcatctaaaatggagaaacctcggttcatgattcttggtggtgctcttgagtaccagcgagtttctaacctattgtcaagttttgatacccttttacagcaggagatggaccatttaaagatggcagtagcaaagattgaagcgcaccaccctgatgtccttctggtagagaaatcagtttctcgatatgctcaggaatatcttcttgcaaaagacatatcacttgttcttaatatcaagaggccacttttagagcgcatagctcgctgcacaggtgctcaaatagttccatctatcgatcatctctcttcacaaaagttgggctactgtgagacatttcatgtggggaggtttctggaagatcttggttctgctggccagggtgggaagaaactggtgaagacattgatgtattttgaaggctgcccaaaaccattgggttgtactattttactcagaggtgccaatggggatgagttgaagaaagtgaagcatgtggttcagtatggggtttttgcagcatatcacttggctttggagacatccttccttgctgatgaaggtgcctctctgcctgaactcccattccagtctccaattactgtggcacttccagataaaccatcgagtattgagaggtccatctcaacagtacctggttttagaattggtgccaacgaaaagtctcagggagctcaacctcagagtgaaccacgaagagccaacagtgtcccgattacagattttgactcagcaattaagagtagaccaccatgtttactaactggtcgtagctctctacctgttcgtccgacttcaagttccacaaattctaccggtttacactctgccccacctgggaacggtgttacttttcatatcgctgataatcaaaatgaaatgggccccaaagattcttgggtggtggaaacttctgcaaccaaacctggctctgataatatgtctaatcatcttactgcaaatagcatgggatcttcagaggccctgggacaaggtatcttctccaatacccaaaatgatccaagtgtaaatcagctaggtagttcaggcaatccaatgctgcatcaagatggtcaaacccatgctgcagatgcaggaaccatgaatgaagagttccctccgtcacctgctgaccatcagagcattttagtttccttgtcatctcgatgcgtgtggaaggggactgtctgtgagaggtcacatctgttccgaattaaatactacggaagttttgataaacctttaggacggtttttgcgagaccatttatttgatcagacctatcaatgccattcttgcgagatgccatcagaggcacatgttcattgttatactcaccgacagggtacactcactatatctgttaagaggctgccagaaattttcttaccaggtgaaagggaagggaagatctggatgtggcacagatgtttgaggtgtccaaggatcagtggatttcctccagctactcggagaatagtgatgtctgatgctgcatggggtttgtcatttggtaagtttttggagctcagtttttcaaaccatgcggctgcaagcagggtggcgagctgtggccattccttacatagagattgtcttcgtttctatggatttgggaaaatggttgcttgctttcggtatgcatcgattgatgttcattctgtctaccttccaccctccaaactggatttcatttccgagaagcaggattggatacaaaaagaaactaatgaggttgttgcccgagcagagcttcttttctctgaagtacttaatgctcttagtcaaatttcagagaaaagatctggttcagggtcaattactagtggcattgtaacagctgaatccagacaccaaatagtggaactggaaggaatgttacagaaggagaaggtggaatttgaggagttacttcagaaaactttgaagagagaacctaagaagggccaacctgttatcgacattctggagatcaatcgattgcggaggcagttgttttttcaatcgtatatgtgggaccaccgcttggtttatgcagccagtttagataacaacagcttccaggatagtttgagcagctcaattccagctgaggataaacccgtggctactaatgaaaagcttgctgagatggatgtagaaataaagccaggaaaaggctataatagttgtgattcctatctggtggatgcaatgcttagtgatggctttgaccacgagggaggctttactagcgctgctatcaatgcagacatggttcatggagaggacaggagtgatgatttgaataaggaaaaaggtcaagctaatctccctactagcacaagtgtcggcgctcaatctgatcctttgacaccaaggacagctcttcgtagggtcctatctgatggtcagcatcctctcatgctgaatttgtcagatacccttgacactgcatggaccggcgaaaatctcattggagttgcgatagcaaaggagaactcgtgtccagttcctgacgtggccatagaaaattcttcaaatgccactccggcagagggattaaatttagaccatgcagaagcccaaaatgggaccaaagttgcccattatgtgtcacctgcattgtcgaccaaggggtctgagaatatggaagacacagttagctggttaaaaatgccctttttgaacttctaccgttcactaaataagaattttttatctgctgctcagaagttcgatacacttggtgggtacaatccagtctatgtgtcatcctttcgggagttggaactggaaggtggtgctaggctgctcttgcctgtgggtgaaaacgatactgttgtccctgtatatgatgatgagcccacaagtcttatagcctatgcccttgtttcatcagattatcagttacaaaccagtgatgagggggaaagagcaaaagacagtggggatattatggccacagcatcttttactgattcagtcattatgcatccagatgatgacactgtgtcagaaactcatagaagtcttgggtctactgaagagagcatactatcaatgtctggatctcgtggctccctgggtttggatccacttttatatacaaaggctttgcatgcaagagtgtcttttggagatgatggtcctcttggtaaggttaagtactctgtcacatgttattatgcaaagcgttttgaagccttaaggaagttgtgttgtccctctgagcttgattttgtaagatccctaagtcgttgtaaaaagtggggagcccaaggaggtaagagcaattggggagcccaaggaggtaagagcaatgtcttttttgcaaaaaccttggatgaccggtttatcgtcaaacaagtcaccaagacagagctggaatctttcattaaatttgcacctgcatatttcaagtacctctctgagtcaattagcacaggaagtccaacctgcctggcaaaaattctggggatatatcaggttatgtcgaagcatgttaagggaggcaaagaaacaaagatggatgttttgattatggagaatcttctgtttggaaggactgtaacacgactctatgatctcaaaggatcttcgcggtcaaggtataatcctgattctagtgggagtaacaaggttcttctggatcagaacttgattgaagcaatgccaacatctccaatcttcgtgggaaacaaggcaaagcggctgttggagagagctgtctggaatgataccgctttccttgcctcaattgatgtgatggattattcattactggtcggggtggatgaagagaagcatgagctagtacttgggatcattgatttcatgaggcagtatacatgggataagcaccttgaaacgtgggttaaagcttcaggaatccttggtgggccaaagaacgcatctccgactgtaatttcaccaaagcaatacaaaaaaaggttcaggaaggccatgacaacctattttctgatggttccagatcagtggtctcctccatctattgttccaagtacatcccagtctgatatcggtgaagagaatgcacacggtggtgcctctgttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009555 GO:0009987 GO:0010008 GO:0010118 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032501 GO:0032502 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

1896

Amino Acids

209.47

Weight (kDa)

5.7

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	20 - 89	7.7e-18	FYVE zinc finger
Cpn60_TCP1	PF00118	477 - 720	1.8e-30	TCP-1/cpn60 chaperonin family
PIP5K	PF01504	1639 - 1805	4e-33	Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K	PF01504	1804 - 1861	7.5e-08	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14270 AT3G14270
fragaria_vesca	FvH4_6g35770 FvH4_6g35770 FvH4_6g35770
malus_domestica	MD09G1173300.v1.1 MD17G1154000.v1.1
prunus_persica	Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1
pyrus_communis	pycom09g09070 pycom17g14660
rosa_chinensis	RchiOBHm_Chr2g0147811
rosa_laevigata	RLG00000020280
rosa_multiflora	Rmu_sc0000308.1_g000046
rosa_roxburghii	Rroxscaffold_2G00099330
rosa_rugosa	Rorug02G0401800 Rorug02G0401800 Rorug02G0401800 Rorug02G0401900
rosa_samantha	Rh2AG459000 Rh2BG472300 Rh2CG446400 Rh2DG481300
rosa_wichuraiana	Rw2G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	2764, 4237, 5026
AasI	GACNNNNNNGTC	2 cut(s)	865, 4246
Acc36I	ACCTGC	5 cut(s)	1369, 2764, 4237, 5026, 5075
AccB1I	GGYRCC	4 cut(s)	2069, 2171, 2279, 5675
AccB7I	CCANNNNNTGG	2 cut(s)	3490, 3655
AccI	GTMKAC	6 cut(s)	136, 2374, 3294, 4238, 4649, 5456
AccII	CGCG	1 cut(s)	5212
AciI	CCGC	7 cut(s)	1278, 3176, 3613, 3652, 5212, 5320, 5352
AcoI	YGGCCR	4 cut(s)	1984, 3202, 4131, 4569
AcuI	CTGAAG	5 cut(s)	2589, 3414, 3527, 4674, 5478
AcyI	GRCGYC	1 cut(s)	1543
AdeI	CACNNNGTG	2 cut(s)	4358, 5672
AfeI	AGCGCT	1 cut(s)	3865
AflII	CTTAAG	1 cut(s)	4816
AflIII	ACRYGT	2 cut(s)	2947, 4787
AgeI	ACCGGT	2 cut(s)	2444, 4959
AhdI	GACNNNNNGTC	1 cut(s)	4621
AhlI	ACTAGT	1 cut(s)	3452
AjiI	CACGTC	1 cut(s)	4129
AjuI	GAANNNNNNNTTGG	4 cut(s)	3302, 3334, 4068, 4100
AleI	CACNNNNGTG	1 cut(s)	5673
AloI	GAACNNNNNNTCC	2 cut(s)	2178, 2210
Alw21I	GWGCWC	5 cut(s)	611, 1654, 1888, 2305, 3159
Alw26I	GTCTC	8 cut(s)	563, 1290, 1934, 2141, 2205, 2298, 2883, 5616
AlwNI	CAGNNNCTG	2 cut(s)	2264, 4124
Ama87I	CYCGRG	1 cut(s)	3372
Aor51HI	AGCGCT	1 cut(s)	3865
ApaI	GGGCCC	1 cut(s)	2516
ArsI	GACNNNNNNTTYG	4 cut(s)	1560, 1592, 2882, 2914
AsiGI	ACCGGT	2 cut(s)	2444, 4959
Asp700I	GAANNNNTTC	3 cut(s)	231, 1200, 1809
AspLEI	GCGC	5 cut(s)	368, 1753, 1866, 3866, 3965
AvaI	CYCGRG	1 cut(s)	3372
AvaII	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
BaeGI	GKGCMC	2 cut(s)	1350, 2516
BaeI	ACNNNNGTAYC	2 cut(s)	4437, 4470
BalI	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
BamHI	GGATCC	4 cut(s)	15, 1036, 1501, 4702
BanI	GGYRCC	4 cut(s)	2069, 2171, 2279, 5675
BanII	GRGCYC	6 cut(s)	2305, 2516, 3159, 4476, 4888, 4915
BarI	GAAGNNNNNNTAC	4 cut(s)	3492, 3524, 4647, 4679
BauI	CACGAG	3 cut(s)	3845, 4111, 4683
BbsI	GAAGAC	3 cut(s)	2015, 3218, 4269
Bbv12I	GWGCWC	5 cut(s)	611, 1654, 1888, 2305, 3159
BbvCI	CCTCAGC	1 cut(s)	3720
BcgI	CGANNNNNNTGC	2 cut(s)	3940, 3974
BciVI	GTATCC	1 cut(s)	3336
BclI	TGATCA	1 cut(s)	2902
BcoDI	GTCTC	8 cut(s)	563, 1290, 1934, 2141, 2205, 2298, 2883, 5616
BcuI	ACTAGT	1 cut(s)	3452
BfaI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
BfmI	CTRYAG	4 cut(s)	76, 1233, 1395, 2715
BfoI	RGCGCY	2 cut(s)	3867, 3966
BfrI	CTTAAG	1 cut(s)	4816
BfuAI	ACCTGC	5 cut(s)	1369, 2764, 4237, 5026, 5075
BfuI	GTATCC	1 cut(s)	3336
BglI	GCCNNNNNGGC	1 cut(s)	4160
BglII	AGATCT	4 cut(s)	316, 1969, 3039, 3431
BlpI	GCTNAGC	1 cut(s)	1368
BmcAI	AGTACT	3 cut(s)	3399, 4778, 5427
Bme18I	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
BmeRI	GACNNNNNGTC	1 cut(s)	4621
BmeT110I	CYCGRG	1 cut(s)	3372
BmgBI	CACGTC	1 cut(s)	4129
BmrI	ACTGGG	3 cut(s)	426, 666, 5635
BmuI	ACTGGG	3 cut(s)	426, 666, 5635
BpiI	GAAGAC	3 cut(s)	2015, 3218, 4269
BpmI	CTGGAG	4 cut(s)	535, 775, 3075, 3617
Bpu10I	CCTNAGC	2 cut(s)	1800, 3720
Bpu1102I	GCTNAGC	1 cut(s)	1368
BpuEI	CTTGAG	4 cut(s)	187, 625, 873, 1676
Bsa29I	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BsaAI	YACGTR	1 cut(s)	1440
BsaBI	GATNNNNATC	1 cut(s)	3807
BsaHI	GRCGYC	1 cut(s)	1543
BsaI	GGTCTC	2 cut(s)	2883, 5616
BsaWI	WCCGGW	2 cut(s)	2444, 4959
BsaXI	ACNNNNNCTCC	2 cut(s)	4097, 4127
Bse118I	RCCGGY	4 cut(s)	34, 2444, 4070, 4959
Bse3DI	GCAATG	3 cut(s)	3828, 4936, 5286
Bse8I	GATNNNNATC	1 cut(s)	3807
BseCI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BseJI	GATNNNNATC	1 cut(s)	3807
BseMI	GCAATG	3 cut(s)	3828, 4936, 5286
BseRI	GAGGAG	3 cut(s)	1325, 3548, 5604
BseSI	GKGCMC	2 cut(s)	1350, 2516
BseYI	CCCAGC	1 cut(s)	1106
BsgI	GTGCAG	1 cut(s)	1861
Bsh1236I	CGCG	1 cut(s)	5212
BshNI	GGYRCC	4 cut(s)	2069, 2171, 2279, 5675
BshTI	ACCGGT	2 cut(s)	2444, 4959
BshVI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BsiHKAI	GWGCWC	5 cut(s)	611, 1654, 1888, 2305, 3159
BsiHKCI	CYCGRG	1 cut(s)	3372
BsiSI	CCGG	5 cut(s)	35, 2445, 4071, 4160, 4960
BslFI	GGGAC	8 cut(s)	871, 2324, 2631, 2824, 3659, 4216, 4439, 4818
BsmAI	GTCTC	8 cut(s)	563, 1290, 1934, 2141, 2205, 2298, 2883, 5616
BsmFI	GGGAC	8 cut(s)	871, 2324, 2631, 2824, 3659, 4216, 4439, 4818
BsmI	GAATGC	1 cut(s)	5668
Bso31I	GGTCTC	2 cut(s)	2883, 5616
BsoBI	CYCGRG	1 cut(s)	3372
Bsp120I	GGGCCC	1 cut(s)	2512
Bsp1407I	TGTACA	1 cut(s)	167
Bsp1720I	GCTNAGC	1 cut(s)	1368
BspACI	CCGC	7 cut(s)	1278, 3176, 3613, 3652, 5212, 5320, 5352
BspDI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BspFNI	CGCG	1 cut(s)	5212
BspHI	TCATGA	3 cut(s)	937, 1635, 5445
BspMAI	CTGCAG	2 cut(s)	1237, 2719
BspMI	ACCTGC	5 cut(s)	1369, 2764, 4237, 5026, 5075
BspQI	GCTCTTC	2 cut(s)	2320, 4002
BspT107I	GGYRCC	4 cut(s)	2069, 2171, 2279, 5675
BspTI	CTTAAG	1 cut(s)	4816
BspTNI	GGTCTC	2 cut(s)	2883, 5616
BsrDI	GCAATG	3 cut(s)	3828, 4936, 5286
BsrFI	RCCGGY	4 cut(s)	34, 2444, 4070, 4959
BsrGI	TGTACA	1 cut(s)	167
BssAI	RCCGGY	4 cut(s)	34, 2444, 4070, 4959
BssNAI	GTATAC	1 cut(s)	5457
BssNI	GRCGYC	1 cut(s)	1543
BssSI	CACGAG	3 cut(s)	3845, 4111, 4683
BssT1I	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
Bst1107I	GTATAC	1 cut(s)	5457
Bst2BI	CACGAG	3 cut(s)	3845, 4111, 4683
Bst6I	CTCTTC	9 cut(s)	213, 1921, 2320, 2733, 3551, 4002, 4650, 5403, 5652
BstACI	GRCGYC	1 cut(s)	1543
BstAFI	CTTAAG	1 cut(s)	4816
BstAUI	TGTACA	1 cut(s)	167
BstBAI	YACGTR	1 cut(s)	1440
BstC8I	GCNNGC	8 cut(s)	36, 1873, 1984, 3184, 3196, 3259, 3753, 4731
BstDSI	CCRYGG	1 cut(s)	3732
BstENI	CCTNNNNNAGG	2 cut(s)	514, 754
BstFNI	CGCG	1 cut(s)	5212
BstH2I	RGCGCY	2 cut(s)	3867, 3966
BstHHI	GCGC	5 cut(s)	368, 1753, 1866, 3866, 3965
BstMAI	GTCTC	8 cut(s)	563, 1290, 1934, 2141, 2205, 2298, 2883, 5616
BstNSI	RCATGY	5 cut(s)	2105, 2951, 4733, 4791, 5114
BstSFI	CTRYAG	4 cut(s)	76, 1233, 1395, 2715
BstSLI	GKGCMC	2 cut(s)	1350, 2516
BstSNI	TACGTA	1 cut(s)	1440
BstUI	CGCG	1 cut(s)	5212
BstV2I	GAAGAC	3 cut(s)	2015, 3218, 4269
BstXI	CCANNNNNNTGG	1 cut(s)	5607
BstZ17I	GTATAC	1 cut(s)	5457
Bsu15I	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BsuI	GTATCC	1 cut(s)	3336
BsuTUI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BtgI	CCRYGG	1 cut(s)	3732
BtrI	CACGTC	1 cut(s)	4129
BtsI	GCAGTG	1 cut(s)	4059
BveI	ACCTGC	5 cut(s)	1369, 2764, 4237, 5026, 5075
Cac8I	GCNNGC	8 cut(s)	36, 1873, 1984, 3184, 3196, 3259, 3753, 4731
CaiI	CAGNNNCTG	2 cut(s)	2264, 4124
CciI	TCATGA	3 cut(s)	937, 1635, 5445
CfoI	GCGC	5 cut(s)	368, 1753, 1866, 3866, 3965
Cfr10I	RCCGGY	4 cut(s)	34, 2444, 4070, 4959
ClaI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
CseI	GACGC	1 cut(s)	1551
CsiI	ACCWGGT	3 cut(s)	581, 2263, 3019
CspAI	ACCGGT	2 cut(s)	2444, 4959
CspCI	CAANNNNNGTGG	6 cut(s)	2193, 2228, 3171, 3206, 5283, 5318
DraI	TTTAAA	1 cut(s)	1725
DraIII	CACNNNGTG	2 cut(s)	4358, 5672
DrdI	GACNNNNNNGTC	2 cut(s)	865, 4246
DriI	GACNNNNNGTC	1 cut(s)	4621
DseDI	GACNNNNNNGTC	2 cut(s)	865, 4246
EaeI	YGGCCR	4 cut(s)	1984, 3202, 4131, 4569
Eam1104I	CTCTTC	9 cut(s)	213, 1921, 2320, 2733, 3551, 4002, 4650, 5403, 5652
Eam1105I	GACNNNNNGTC	1 cut(s)	4621
EarI	CTCTTC	9 cut(s)	213, 1921, 2320, 2733, 3551, 4002, 4650, 5403, 5652
Ecl136II	GAGCTC	2 cut(s)	2303, 3157
Eco105I	TACGTA	1 cut(s)	1440
Eco130I	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
Eco24I	GRGCYC	6 cut(s)	2305, 2516, 3159, 4476, 4888, 4915
Eco31I	GGTCTC	2 cut(s)	2883, 5616
Eco32I	GATATC	1 cut(s)	5650
Eco47I	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
Eco47III	AGCGCT	1 cut(s)	3865
Eco53kI	GAGCTC	2 cut(s)	2303, 3157
Eco57I	CTGAAG	5 cut(s)	2589, 3414, 3527, 4674, 5478
Eco88I	CYCGRG	1 cut(s)	3372
EcoICRI	GAGCTC	2 cut(s)	2303, 3157
EcoNI	CCTNNNNNAGG	2 cut(s)	514, 754
EcoO109I	RGGNCCY	3 cut(s)	2513, 2611, 4006
EcoRV	GATATC	1 cut(s)	5650
EcoT14I	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
EcoT22I	ATGCAT	3 cut(s)	1532, 3274, 4605
EcoT38I	GRGCYC	6 cut(s)	2305, 2516, 3159, 4476, 4888, 4915
ErhI	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
FalI	AAGNNNNNCTT	4 cut(s)	945, 977, 4726, 4758
FaqI	GGGAC	8 cut(s)	871, 2324, 2631, 2824, 3659, 4216, 4439, 4818
FauI	CCCGC	1 cut(s)	1271
FbaI	TGATCA	1 cut(s)	2902
FblI	GTMKAC	6 cut(s)	136, 2374, 3294, 4238, 4649, 5456
FriOI	GRGCYC	6 cut(s)	2305, 2516, 3159, 4476, 4888, 4915
FspBI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
GlaI	GCGC	5 cut(s)	367, 1752, 1865, 3865, 3964
GsaI	CCCAGC	1 cut(s)	1110
GsuI	CTGGAG	4 cut(s)	535, 775, 3075, 3617
HaeII	RGCGCY	2 cut(s)	3867, 3966
HapII	CCGG	5 cut(s)	35, 2445, 4071, 4160, 4960
HgaI	GACGC	1 cut(s)	1551
HhaI	GCGC	5 cut(s)	368, 1753, 1866, 3866, 3965
Hin1I	GRCGYC	1 cut(s)	1543
Hin6I	GCGC	5 cut(s)	366, 1751, 1864, 3864, 3963
HinP1I	GCGC	5 cut(s)	366, 1751, 1864, 3864, 3963
HincII	GTYRAC	3 cut(s)	850, 1117, 4239
HindII	GTYRAC	3 cut(s)	850, 1117, 4239
HindIII	AAGCTT	2 cut(s)	3749, 5490
HpaII	CCGG	5 cut(s)	35, 2445, 4071, 4160, 4960
Hpy99I	CGWCG	2 cut(s)	845, 1605
HpyCH4IV	ACGT	4 cut(s)	1119, 1439, 4128, 5480
HpySE526I	ACGT	4 cut(s)	1119, 1439, 4128, 5480
Hsp92I	GRCGYC	1 cut(s)	1543
HspAI	GCGC	5 cut(s)	366, 1751, 1864, 3864, 3963
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	2902
LguI	GCTCTTC	2 cut(s)	2320, 4002
LmnI	GCTCC	7 cut(s)	1004, 1312, 2300, 3154, 4694, 4883, 4910
MabI	ACCWGGT	3 cut(s)	581, 2263, 3019
MaeI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
MaeII	ACGT	4 cut(s)	1119, 1439, 4128, 5480
MfeI	CAATTG	2 cut(s)	4903, 5367
MlsI	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
MluNI	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
MlyI	GAGTC	5 cut(s)	194, 1292, 2351, 5051, 5181
MmeI	TCCRAC	6 cut(s)	1407, 2444, 4377, 5087, 5307, 5552
Mox20I	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
Mph1103I	ATGCAT	3 cut(s)	1532, 3274, 4605
MroNI	GCCGGC	1 cut(s)	34
MroXI	GAANNNNTTC	3 cut(s)	231, 1200, 1809
MscI	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
MslI	CAYNNNNRTG	5 cut(s)	1761, 2697, 2794, 4608, 5673
Msp20I	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
MspA1I	CMGCKG	3 cut(s)	1278, 3470, 3719
MspCI	CTTAAG	1 cut(s)	4816
MspI	CCGG	5 cut(s)	35, 2445, 4071, 4160, 4960
MunI	CAATTG	2 cut(s)	4903, 5367
Mva1269I	GAATGC	1 cut(s)	5668
MvnI	CGCG	1 cut(s)	5212
NaeI	GCCGGC	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	34
NmuCI	GTSAC	6 cut(s)	197, 2751, 2826, 4224, 4783, 4978
NsiI	ATGCAT	3 cut(s)	1532, 3274, 4605
NspI	RCATGY	5 cut(s)	2105, 2951, 4733, 4791, 5114
OliI	CACNNNNGTG	1 cut(s)	5673
PaeI	GCATGC	1 cut(s)	4733
PagI	TCATGA	3 cut(s)	937, 1635, 5445
PaqCI	CACCTGC	3 cut(s)	2764, 4237, 5026
PasI	CCCWGGG	2 cut(s)	2614, 4693
PciI	ACATGT	2 cut(s)	2947, 4787
PciSI	GCTCTTC	2 cut(s)	2320, 4002
PcsI	WCGNNNNNNNCGW	1 cut(s)	2884
PctI	GAATGC	1 cut(s)	5668
PdiI	GCCGGC	1 cut(s)	36
PdmI	GAANNNNTTC	3 cut(s)	231, 1200, 1809
PflMI	CCANNNNNTGG	2 cut(s)	3490, 3655
PfoI	TCCNGGA	3 cut(s)	512, 752, 3690
PinAI	ACCGGT	2 cut(s)	2444, 4959
PleI	GAGTC	5 cut(s)	194, 1291, 2351, 5050, 5181
PpsI	GAGTC	5 cut(s)	194, 1291, 2351, 5050, 5181
Ppu21I	YACGTR	1 cut(s)	1440
PpuMI	RGGWCCY	1 cut(s)	4006
PscI	ACATGT	2 cut(s)	2947, 4787
Psp124BI	GAGCTC	2 cut(s)	2305, 3159
Psp5II	RGGWCCY	1 cut(s)	4006
PspFI	CCCAGC	1 cut(s)	1106
PspOMI	GGGCCC	1 cut(s)	2512
PspPPI	RGGWCCY	1 cut(s)	4006
PstI	CTGCAG	2 cut(s)	1237, 2719
PstNI	CAGNNNCTG	2 cut(s)	2264, 4124
PvuII	CAGCTG	2 cut(s)	3470, 3719
RseI	CAYNNNNRTG	5 cut(s)	1761, 2697, 2794, 4608, 5673
SacI	GAGCTC	2 cut(s)	2305, 3159
SalI	GTCGAC	1 cut(s)	4237
SapI	GCTCTTC	2 cut(s)	2320, 4002
ScaI	AGTACT	3 cut(s)	3399, 4778, 5427
SchI	GAGTC	5 cut(s)	194, 1292, 2351, 5051, 5181
SexAI	ACCWGGT	3 cut(s)	581, 2263, 3019
SfcI	CTRYAG	4 cut(s)	76, 1233, 1395, 2715
SinI	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
SmiMI	CAYNNNNRTG	5 cut(s)	1761, 2697, 2794, 4608, 5673
SmlI	CTYRAG	5 cut(s)	202, 604, 888, 1655, 4816
SmoI	CTYRAG	5 cut(s)	202, 604, 888, 1655, 4816
SnaBI	TACGTA	1 cut(s)	1440
SpeI	ACTAGT	1 cut(s)	3452
SphI	GCATGC	1 cut(s)	4733
SsiI	CCGC	7 cut(s)	1278, 3176, 3613, 3652, 5212, 5320, 5352
SspMI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
SstI	GAGCTC	2 cut(s)	2305, 3159
StyI	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
TaiI	ACGT	4 cut(s)	1122, 1442, 4131, 5483
TatI	WGTACW	6 cut(s)	167, 2051, 3397, 4776, 5425, 5633
TauI	GCSGC	2 cut(s)	3179, 5323
TseFI	GTSAC	6 cut(s)	197, 2751, 2826, 4224, 4783, 4978
Tsp45I	GTSAC	6 cut(s)	197, 2751, 2826, 4224, 4783, 4978
TspGWI	ACGGA	2 cut(s)	2739, 2868
Van91I	CCANNNNNTGG	2 cut(s)	3490, 3655
Vha464I	CTTAAG	1 cut(s)	4816
VpaK11BI	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
XagI	CCTNNNNNAGG	2 cut(s)	514, 754
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	5 cut(s)	2105, 2951, 4733, 4791, 5114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4990
XmiI	GTMKAC	6 cut(s)	136, 2374, 3294, 4238, 4649, 5456
XmnI	GAANNNNTTC	3 cut(s)	231, 1200, 1809
XspI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
ZrmI	AGTACT	3 cut(s)	3399, 4778, 5427
Zsp2I	ATGCAT	3 cut(s)	1532, 3274, 4605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.