Rmu_sc0000332.1_g000063

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000332.1
OG0003861
Physical Location & Seq
Reverse (-)
302022 .. 305087
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1512 bp
atgcggggatatgatacacagagattcgatcgaccagttgaggaatatgatgattatgagtccgagggggatggatatggatacgaggagcaaggagatgagtatgaagatgaagaggaagaggaagaagaagaagctccaaaacctaccaaggaagcattggagtatcttgagttgagacaacgcttgaaagaacaagttcgaaggcagatgaagaagaaggaaggtggttctcgggccaactccaatgatagaaaaaagctcccctatgataattttggatcgttctttggcccttctcaaccagttatcgctcagagagtaattcaagaaagcaagtcgttgttggaaacccagcatctggcatctagggccacaaactctgtccatcctaacaagaagagctctgggtctacctctggtggctctaaatctgttgcacataacccgaaacccaaagtaattaatgagcaaaaaaataaactccaaaagcttaaagacactagagattactcatttttattatctgaagatgcggagcttcctgctcctgcaaaggatcgtccctctcgaagtgactctgctctgaagtctgaggtgcgatcaagtcaaacaatggcaaaaagtaaacaacctttggcaaataatggtagacctgtccatggtggtcatgataatggtagatctgttcatggcagtcgtgagaatgggagacctgttcagggcagtcgtgagaatgggagacctgttcaaggcagtcgtgagaatgggagacctgttcagtctggtcgtgatgaaaggaaagcggttcctactaatggacatatgcattctaaagttgggtccaataggccaagttctgccagtagccgacctggttcaacatcaatggactctagaaaacaacttggtagcaacaatgcaaatgggcctggccggcctctagggccaaaaggtctgccttcaaagatgcctgcttctaccacagagaggagggcttctgcaccagttttgaagaattccctgtcttctttgcagaaagcaccctcttcgaagtcgcagtcatctgttcagaggcagccagtacagcaaagaaaagaagtacgagaaccttctaagcccaatatgttatcaaaacagtccacgggattgtcaaaacctcagatccacaagccacaaatgcataagcaaatcccatcacgtcctatgtcacaagagtatcgtcccaaaaaaaggcctgcaagcaggtttgcagatgatgagtatgaccctgaatcgggggatattagtagtatgatcagaaacatgtttggttacaatccaactaaatttgctgatgacgacgacgttagtgacatggaggcaggatttgaagatattcagagggaggagaggagaagtgcaaaaattgcaagacaggaggatgaagaacaagctaggttgatagaagaagaagaaaggagggaacgtttggctgccaagatgagaaaacagaagaagctcaagcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

503

Amino Acids

56.59

Weight (kDa)

9.58

Isoelectric Point (pI)

71.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 401 - 490 7e-19 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1236
AccB7I CCANNNNNTGG 1 cut(s) 361
AccI GTMKAC 2 cut(s) 413, 652
AciI CCGC 3 cut(s) 4, 536, 806
AclI AACGTT 1 cut(s) 1468
AclWI GGATC 3 cut(s) 289, 567, 1159
AcoI YGGCCR 1 cut(s) 934
AcsI RAATTY 2 cut(s) 1018, 1328
AcuI CTGAAG 2 cut(s) 549, 608
AfaI GTAC 2 cut(s) 1086, 1104
AfiI CCNNNNNNNGG 9 cut(s) 361, 662, 722, 752, 818, 990, 1233, 1276, 1277
AflIII ACRYGT 1 cut(s) 1305
AgsI TTSAA 7 cut(s) 190, 329, 752, 882, 966, 1015, 1373
AjiI CACGTC 1 cut(s) 1202
AjnI CCWGG 2 cut(s) 874, 931
AluBI AGCT 7 cut(s) 137, 262, 405, 493, 541, 1436, 1501
AluI AGCT 7 cut(s) 137, 262, 405, 493, 541, 1436, 1501
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 4 cut(s) 172, 706, 736, 766
AlwI GGATC 3 cut(s) 289, 567, 1159
AlwNI CAGNNNCTG 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 9 cut(s) 237, 292, 372, 851, 929, 934, 938, 947, 1235
ApeKI GCWGC 2 cut(s) 1078, 1475
ApoI RAATTY 2 cut(s) 1018, 1328
ArsI GACNNNNNNTTYG 2 cut(s) 1046, 1078
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 2 cut(s) 198, 1377
AspS9I GGNCC 6 cut(s) 237, 293, 372, 843, 929, 947
AsuII TTCGAA 2 cut(s) 202, 1052
AvaI CYCGRG 1 cut(s) 234
AvaII GGWCC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 1202, 1235
BanII GRGCYC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 1020
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 1090, 1462
BccI CCATC 3 cut(s) 65, 396, 1204
BcgI CGANNNNNNTGC 2 cut(s) 1032, 1066
BciT130I CCWGG 2 cut(s) 876, 933
BciVI GTATCC 1 cut(s) 74
BclI TGATCA 1 cut(s) 1296
BcoDI GTCTC 4 cut(s) 172, 706, 736, 766
BfaI CTAG 5 cut(s) 369, 504, 897, 944, 1437
BfuAI ACCTGC 1 cut(s) 1236
BfuI GTATCC 1 cut(s) 74
BglI GCCNNNNNGGC 2 cut(s) 937, 946
BglII AGATCT 1 cut(s) 683
BisI GCNGC 2 cut(s) 1079, 1476
BlsI GCNGC 2 cut(s) 1080, 1477
Bme1390I CCNGG 2 cut(s) 876, 933
Bme18I GGWCC 1 cut(s) 843
BmeT110I CYCGRG 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 1202
BmgT120I GGNCC 6 cut(s) 237, 293, 372, 843, 929, 947
BmiI GGNNCC 2 cut(s) 810, 844
BmrFI CCNGG 2 cut(s) 876, 933
BmsI GCATC 4 cut(s) 367, 374, 523, 960
BpiI GAAGAC 1 cut(s) 1020
Bpu14I TTCGAA 2 cut(s) 202, 1052
BpuEI CTTGAG 2 cut(s) 191, 1487
BsaI GGTCTC 3 cut(s) 706, 736, 766
BsaJI CCNNGG 4 cut(s) 63, 150, 661, 1143
BsaXI ACNNNNNCTCC 2 cut(s) 1453, 1483
Bsc4I CCNNNNNNNGG 9 cut(s) 361, 662, 722, 752, 818, 990, 1233, 1276, 1277
Bse118I RCCGGY 1 cut(s) 936
Bse1I ACTGG 5 cut(s) 35, 305, 864, 1007, 1082
BseBI CCWGG 2 cut(s) 876, 933
BseDI CCNNGG 4 cut(s) 63, 150, 661, 1143
BseGI GGATG 3 cut(s) 76, 388, 1429
BseLI CCNNNNNNNGG 9 cut(s) 361, 662, 722, 752, 818, 990, 1233, 1276, 1277
BseMII CTCAG 3 cut(s) 329, 585, 1175
BseNI ACTGG 5 cut(s) 35, 305, 864, 1007, 1082
BseRI GAGGAG 4 cut(s) 101, 1006, 1403, 1408
BseXI GCAGC 2 cut(s) 1090, 1462
BseYI CCCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 987
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 9 cut(s) 239, 294, 374, 853, 931, 936, 940, 949, 1237
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 937
BslFI GGGAC 2 cut(s) 549, 1209
BslI CCNNNNNNNGG 9 cut(s) 361, 662, 722, 752, 818, 990, 1233, 1276, 1277
BsmAI GTCTC 4 cut(s) 172, 706, 736, 766
BsmFI GGGAC 2 cut(s) 549, 1209
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 9 cut(s) 239, 294, 374, 853, 931, 936, 940, 949, 1237
Bso31I GGTCTC 3 cut(s) 706, 736, 766
BsoBI CYCGRG 1 cut(s) 234
Bsp119I TTCGAA 2 cut(s) 202, 1052
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 7 cut(s) 28, 281, 559, 602, 683, 1164, 1296
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 3 cut(s) 4, 536, 806
BspANI GGCC 9 cut(s) 239, 294, 374, 853, 931, 936, 940, 949, 1237
BspCNI CTCAG 3 cut(s) 328, 586, 1174
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 810, 844
BspMI ACCTGC 1 cut(s) 1236
BspPI GGATC 3 cut(s) 289, 567, 1159
BspQI GCTCTTC 1 cut(s) 395
BspT104I TTCGAA 2 cut(s) 202, 1052
BspTNI GGTCTC 3 cut(s) 706, 736, 766
BsrFI RCCGGY 1 cut(s) 936
BsrI ACTGG 5 cut(s) 35, 305, 864, 1007, 1082
BssAI RCCGGY 1 cut(s) 936
BssECI CCNNGG 4 cut(s) 63, 150, 661, 1143
BssMI GATC 7 cut(s) 28, 281, 559, 602, 683, 1164, 1296
BssT1I CCWWGG 2 cut(s) 150, 661
Bst2UI CCWGG 2 cut(s) 876, 933
Bst4CI ACNGT 1 cut(s) 1140
Bst6I CTCTTC 4 cut(s) 108, 114, 395, 1054
BstAPI GCANNNNNTGC 1 cut(s) 1409
BstBI TTCGAA 2 cut(s) 202, 1052
BstC8I GCNNGC 4 cut(s) 938, 975, 1239, 1243
BstDEI CTNAG 4 cut(s) 315, 594, 1116, 1161
BstDSI CCRYGG 2 cut(s) 661, 1143
BstENI CCTNNNNNAGG 1 cut(s) 750
BstF5I GGATG 3 cut(s) 76, 388, 1429
BstKTI GATC 7 cut(s) 31, 284, 562, 605, 686, 1167, 1299
BstMAI GTCTC 4 cut(s) 172, 706, 736, 766
BstMBI GATC 7 cut(s) 28, 281, 559, 602, 683, 1164, 1296
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 6 cut(s) 371, 937, 946, 1087, 1180, 1409
BstNI CCWGG 2 cut(s) 876, 933
BstNSI RCATGY 1 cut(s) 1309
BstSCI CCNGG 2 cut(s) 874, 931
BstV1I GCAGC 2 cut(s) 1090, 1462
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 2 cut(s) 683, 1164
BstYI RGATCY 2 cut(s) 683, 1164
BsuI GTATCC 1 cut(s) 74
BsuRI GGCC 9 cut(s) 239, 294, 374, 853, 931, 936, 940, 949, 1237
BtgI CCRYGG 2 cut(s) 661, 1143
BtrI CACGTC 1 cut(s) 1202
BtsCI GGATG 3 cut(s) 76, 388, 1429
BveI ACCTGC 1 cut(s) 1236
Cac8I GCNNGC 4 cut(s) 938, 975, 1239, 1243
CaiI CAGNNNCTG 1 cut(s) 361
CciI TCATGA 1 cut(s) 670
Cfr10I RCCGGY 1 cut(s) 936
Cfr13I GGNCC 6 cut(s) 237, 293, 372, 843, 929, 947
CsiI ACCWGGT 1 cut(s) 874
Csp6I GTAC 2 cut(s) 1085, 1103
CviAII CATG 5 cut(s) 662, 671, 692, 1306, 1357
CviQI GTAC 2 cut(s) 1085, 1103
DdeI CTNAG 4 cut(s) 315, 594, 1116, 1161
DpnI GATC 7 cut(s) 30, 283, 561, 604, 685, 1166, 1298
DpnII GATC 7 cut(s) 28, 281, 559, 602, 683, 1164, 1296
EaeI YGGCCR 1 cut(s) 934
Eam1104I CTCTTC 4 cut(s) 108, 114, 395, 1054
EarI CTCTTC 4 cut(s) 108, 114, 395, 1054
Ecl136II GAGCTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 150, 661
Eco147I AGGCCT 1 cut(s) 1237
Eco24I GRGCYC 1 cut(s) 407
Eco31I GGTCTC 3 cut(s) 706, 736, 766
Eco47I GGWCC 1 cut(s) 843
Eco53kI GAGCTC 1 cut(s) 405
Eco57I CTGAAG 2 cut(s) 549, 608
Eco88I CYCGRG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 750
EcoRI GAATTC 1 cut(s) 1018
EcoRII CCWGG 2 cut(s) 874, 931
EcoT14I CCWWGG 2 cut(s) 150, 661
EcoT22I ATGCAT 2 cut(s) 831, 1185
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 2 cut(s) 150, 661
FaeI CATG 5 cut(s) 665, 674, 695, 1309, 1360
FaqI GGGAC 2 cut(s) 549, 1209
FatI CATG 5 cut(s) 661, 670, 691, 1305, 1356
FauNDI CATATG 1 cut(s) 825
FbaI TGATCA 1 cut(s) 1296
FblI GTMKAC 2 cut(s) 413, 652
Fnu4HI GCNGC 2 cut(s) 1079, 1476
FokI GGATG 3 cut(s) 83, 375, 1436
FriOI GRGCYC 1 cut(s) 407
FseI GGCCGGCC 1 cut(s) 940
Fsp4HI GCNGC 2 cut(s) 1079, 1476
FspBI CTAG 5 cut(s) 369, 504, 897, 944, 1437
GluI GCNGC 2 cut(s) 1079, 1476
GsaI CCCAGC 1 cut(s) 358
HaeIII GGCC 9 cut(s) 239, 294, 374, 853, 931, 936, 940, 949, 1237
HapII CCGG 1 cut(s) 937
Hin1II CATG 5 cut(s) 665, 674, 695, 1309, 1360
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 5 cut(s) 24, 59, 578, 893, 1274
HpaII CCGG 1 cut(s) 937
Hpy166II GTNNAC 4 cut(s) 414, 629, 653, 1143
Hpy188I TCNGA 9 cut(s) 64, 318, 529, 588, 595, 1074, 1164, 1301, 1383
Hpy188III TCNNGA 9 cut(s) 170, 329, 570, 671, 701, 731, 761, 791, 897
Hpy8I GTNNAC 4 cut(s) 414, 629, 653, 1143
Hpy99I CGWCG 2 cut(s) 1346, 1349
HpyAV CCTTC 6 cut(s) 198, 214, 218, 306, 972, 1122
HpyCH4III ACNGT 1 cut(s) 1140
HpyCH4IV ACGT 3 cut(s) 1201, 1347, 1468
HpyF10VI GCNNNNNNNGC 6 cut(s) 371, 937, 946, 1087, 1180, 1409
HpyF3I CTNAG 4 cut(s) 315, 594, 1116, 1161
HpySE526I ACGT 3 cut(s) 1201, 1347, 1468
Hsp92II CATG 5 cut(s) 665, 674, 695, 1309, 1360
KroI GCCGGC 1 cut(s) 936
KroNI GCCGGC 1 cut(s) 938
Ksp22I TGATCA 1 cut(s) 1296
Kzo9I GATC 7 cut(s) 28, 281, 559, 602, 683, 1164, 1296
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 5 cut(s) 88, 142, 267, 538, 553
Lsp1109I GCAGC 2 cut(s) 1090, 1462
LweI GCATC 4 cut(s) 367, 374, 523, 960
MabI ACCWGGT 1 cut(s) 874
MaeI CTAG 5 cut(s) 369, 504, 897, 944, 1437
MaeII ACGT 3 cut(s) 1201, 1347, 1468
MaeIII GTNAC 4 cut(s) 575, 1209, 1313, 1352
MalI GATC 7 cut(s) 30, 283, 561, 604, 685, 1166, 1298
MboI GATC 7 cut(s) 28, 281, 559, 602, 683, 1164, 1296
MflI RGATCY 2 cut(s) 683, 1164
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 6 cut(s) 274, 324, 462, 1018, 1328, 1407
MlyI GAGTC 3 cut(s) 68, 572, 887
MmeI TCCRAC 2 cut(s) 327, 1346
Mph1103I ATGCAT 2 cut(s) 831, 1185
MroNI GCCGGC 1 cut(s) 936
MroXI GAANNNNTTC 2 cut(s) 198, 1377
MseI TTAA 2 cut(s) 465, 495
MslI CAYNNNNRTG 1 cut(s) 675
MspI CCGG 1 cut(s) 937
MspR9I CCNGG 2 cut(s) 876, 933
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 2 cut(s) 876, 933
MwoI GCNNNNNNNGC 6 cut(s) 371, 937, 946, 1087, 1180, 1409
NaeI GCCGGC 1 cut(s) 938
NcoI CCATGG 1 cut(s) 661
NdeI CATATG 1 cut(s) 825
NdeII GATC 7 cut(s) 28, 281, 559, 602, 683, 1164, 1296
NgoMIV GCCGGC 1 cut(s) 936
NlaIII CATG 5 cut(s) 665, 674, 695, 1309, 1360
NlaIV GGNNCC 2 cut(s) 810, 844
NmuCI GTSAC 3 cut(s) 575, 1209, 1352
NsiI ATGCAT 2 cut(s) 831, 1185
NspI RCATGY 1 cut(s) 1309
NspV TTCGAA 2 cut(s) 202, 1052
PagI TCATGA 1 cut(s) 670
PceI AGGCCT 1 cut(s) 1237
PciI ACATGT 1 cut(s) 1305
PciSI GCTCTTC 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 568
PctI GAATGC 1 cut(s) 829
PdiI GCCGGC 1 cut(s) 938
PdmI GAANNNNTTC 2 cut(s) 198, 1377
PfeI GAWTC 2 cut(s) 24, 1274
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 2 cut(s) 1080, 1477
Ple19I CGATCG 1 cut(s) 31
PleI GAGTC 3 cut(s) 67, 572, 887
PpsI GAGTC 3 cut(s) 67, 572, 887
PscI ACATGT 1 cut(s) 1305
PshBI ATTAAT 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 1468
Psp6I CCWGG 2 cut(s) 874, 931
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 2 cut(s) 874, 931
PspN4I GGNNCC 2 cut(s) 810, 844
PspPI GGNCC 6 cut(s) 237, 293, 372, 843, 929, 947
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 683, 1164
PvuI CGATCG 1 cut(s) 31
RigI GGCCGGCC 1 cut(s) 940
RsaI GTAC 2 cut(s) 1086, 1104
RsaNI GTAC 2 cut(s) 1085, 1103
RseI CAYNNNNRTG 1 cut(s) 675
SacI GAGCTC 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 2 cut(s) 465, 495
SatI GCNGC 2 cut(s) 1079, 1476
Sau3AI GATC 7 cut(s) 28, 281, 559, 602, 683, 1164, 1296
Sau96I GGNCC 6 cut(s) 237, 293, 372, 843, 929, 947
SchI GAGTC 3 cut(s) 68, 572, 887
ScrFI CCNGG 2 cut(s) 876, 933
SduI GDGCHC 1 cut(s) 407
SexAI ACCWGGT 1 cut(s) 874
SfaNI GCATC 4 cut(s) 367, 374, 523, 960
SfiI GGCCNNNNNGGCC 2 cut(s) 937, 946
SfuI TTCGAA 2 cut(s) 202, 1052
SinI GGWCC 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 2 cut(s) 170, 1502
SmoI CTYRAG 2 cut(s) 170, 1502
Sse9I AATT 6 cut(s) 274, 324, 462, 1018, 1328, 1407
SseBI AGGCCT 1 cut(s) 1237
SsiI CCGC 3 cut(s) 4, 536, 806
SspMI CTAG 5 cut(s) 369, 504, 897, 944, 1437
SstI GAGCTC 1 cut(s) 407
StuI AGGCCT 1 cut(s) 1237
StyD4I CCNGG 2 cut(s) 874, 931
StyI CCWWGG 2 cut(s) 150, 661
TaaI ACNGT 1 cut(s) 1140
TaiI ACGT 3 cut(s) 1204, 1350, 1471
TaqI TCGA 5 cut(s) 27, 31, 202, 571, 1052
TasI AATT 6 cut(s) 274, 324, 462, 1018, 1328, 1407
TatI WGTACW 1 cut(s) 1084
TfiI GAWTC 2 cut(s) 24, 1274
Tru1I TTAA 2 cut(s) 465, 495
Tru9I TTAA 2 cut(s) 465, 495
TseFI GTSAC 3 cut(s) 575, 1209, 1352
TseI GCWGC 2 cut(s) 1078, 1475
Tsp45I GTSAC 3 cut(s) 575, 1209, 1352
TspDTI ATGAA 6 cut(s) 120, 126, 227, 680, 810, 1440
Van91I CCANNNNNTGG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 843
VspI ATTAAT 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 750
XapI RAATTY 2 cut(s) 1018, 1328
XbaI TCTAGA 1 cut(s) 896
XceI RCATGY 1 cut(s) 1309
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 2 cut(s) 413, 652
XmnI GAANNNNTTC 2 cut(s) 198, 1377
XspI CTAG 5 cut(s) 369, 504, 897, 944, 1437
Zsp2I ATGCAT 2 cut(s) 831, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.