Rmu_sc0000350.1_g000014

Amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000350.1
OG0011681
Physical Location & Seq
Forward (+)
41101 .. 44404
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1611 bp
atgagcagttggacgaagctggatgaggatcttggaccggagcgcggggacgatgattttttaacagatgatgaagagaaccaagcacacagaaacaactatgagccttccgaagccgaaactgaatctgaagtaggcagacctgagggcattgccattagtgcacctaacaataatgcatggcctcagagctactggcagtccatcgatatgtacaccaatgtcatgactcctccttcccttccttcccttacttttatgcgatcaagagggcccagtttcagctccttgtcttcgtttgttaaggggcaacaagcacctgatgataattcttcacagctcagtagcaaattacttgcttccgaagcaagtttagaaaaagaagggcttgcagcatcatctcccccaactctctccgcaaaaaattctgtctgtgaattgccaccgccaaaggaacatagttgttcattttcacaagctgtactcaatggaatcaatgtcttgtgtgggatgggacttattacaacaccatatgcaataaaagaaggagggtggttgagcctcattttacttgcattgtttggtgtgatatgttgctatactggaattttattaatgcgatgtttagaaagttgtcccggactccgaacctatccagatattggccaggctgcttttggctctactggccgtttaattctatctggtgcttgtgtggagtttttgacgatgatgggcgataacttagcggcaatattcccaaacacccacatagcatttgcaggaatccatcttcaaagtcatgaaatttttgccatcacagcgactcttgtagttcttcccactgtatggcttcaaaatcttagtttgctctcttacctctcagttggaggagtaggtgcatcgattctggtggcctttttattgctgtgggttggggctgtgaaccaagttggctttcatcacagtggatccgccttaaacctttccggtttgtctgtcacaattggtatatatggtttcggctacgctggtcattcagtgttcccaaatatctacacatctatgagaaaaccatctcaatttccagcagttctactaacctgtggtgccttttgcttcttcatgtatactggggtagcaatatgtggctatctaatgtttggagactcggtgaggtctcagttcactctaaacatgcccgaagaatttgttgcttcaaaaattgcagtctggacaacaattgtgaacccgatgacaaagtatgccctcacaataacgcccgttgctctgagtttagaggaactctttcctgtagcttggatgggatcacatttggcttcaatccttacaagaacagttctagttctatcaactttggtcgtagcgttgagctttccattctttggtgcggtgatggcattgatgggatccttacttgcaatgttagtggctattatcttcccaggggtctgttatctcatcctacttaaaggtagattaactaagtcgcagattacaacttgcgttttcgttataatgctgggggtgttgtgctctattattggcacatattcatcaattacaaaaatagctgaacaaatggactaa

Protein Analysis

536

Amino Acids

57.63

Weight (kDa)

5.15

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 155 - 528 3e-61 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09330 AT3G09340 AT5G02170 AT5G02170 AT5G02180 AT5G02180
fragaria_vesca FvH4_6g13370 FvH4_6g13370
malus_domestica MD12G1144700.v1.1
prunus_persica Prupe.6G258200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0466251
rosa_laevigata RLG00000024593
rosa_multiflora Rmu_sc0000350.1_g000014 Rmu_sc0022084.1_g000006
rosa_roxburghii Rroxscaffold_6G00414690
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG148000 Rh3DG148700
rosa_wichuraiana Rw3G011960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1538
AccB1I GGYRCC 1 cut(s) 1109
AccB7I CCANNNNNTGG 3 cut(s) 662, 849, 1406
AccI GTMKAC 1 cut(s) 1130
AccII CGCG 1 cut(s) 45
AciI CCGC 6 cut(s) 45, 417, 446, 749, 975, 1412
AclWI GGATC 6 cut(s) 36, 966, 979, 1336, 1425, 1438
AcoI YGGCCR 2 cut(s) 664, 688
AcsI RAATTY 4 cut(s) 424, 606, 807, 1208
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 2 cut(s) 215, 483
AfiI CCNNNNNNNGG 4 cut(s) 44, 662, 849, 1406
AgsI TTSAA 4 cut(s) 797, 857, 1221, 1344
AjnI CCWGG 2 cut(s) 666, 1465
AjuI GAANNNNNNNTTGG 2 cut(s) 942, 974
AluBI AGCT 8 cut(s) 19, 192, 285, 340, 479, 1319, 1395, 1595
AluI AGCT 8 cut(s) 19, 192, 285, 340, 479, 1319, 1395, 1595
Alw21I GWGCWC 2 cut(s) 166, 1559
Alw26I GTCTC 2 cut(s) 1161, 1185
Alw44I GTGCAC 1 cut(s) 162
AlwI GGATC 6 cut(s) 36, 966, 979, 1336, 1425, 1438
AoxI GGCC 5 cut(s) 182, 272, 664, 688, 915
ApaI GGGCCC 1 cut(s) 276
ApaLI GTGCAC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 392, 671
ApoI RAATTY 4 cut(s) 424, 606, 807, 1208
AseI ATTAAT 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 1308
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 3 cut(s) 35, 272, 273
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 2 cut(s) 1186, 1426
AvaII GGWCC 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 144
BaeGI GKGCMC 2 cut(s) 166, 276
BalI TGGCCA 1 cut(s) 666
BamHI GGATCC 2 cut(s) 971, 1430
BanI GGYRCC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 2 cut(s) 166, 1559
BbvI GCAGC 2 cut(s) 404, 658
BccI CCATC 9 cut(s) 212, 505, 727, 798, 824, 1084, 1318, 1411, 1420
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 2 cut(s) 668, 1467
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 2 cut(s) 1161, 1185
BfaI CTAG 1 cut(s) 1364
BfmI CTRYAG 1 cut(s) 1314
BisI GCNGC 3 cut(s) 393, 672, 750
BlsI GCNGC 3 cut(s) 394, 673, 751
Bme1390I CCNGG 3 cut(s) 639, 668, 1467
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 35, 272, 273
BmiI GGNNCC 4 cut(s) 274, 973, 1111, 1432
BmrFI CCNGG 3 cut(s) 639, 668, 1467
BmrI ACTGGG 2 cut(s) 270, 1143
BmsI GCATC 2 cut(s) 404, 911
BmuI ACTGGG 2 cut(s) 270, 1143
BpiI GAAGAC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 639
Bsa29I ATCGAT 2 cut(s) 207, 905
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 1185
BsaJI CCNNGG 2 cut(s) 1465, 1466
BsaWI WCCGGW 2 cut(s) 37, 989
BsaXI ACNNNNNCTCC 2 cut(s) 1158, 1188
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 662, 849, 1406
Bse1I ACTGG 5 cut(s) 200, 276, 607, 691, 1138
Bse21I CCTNAGG 1 cut(s) 144
Bse3DI GCAATG 2 cut(s) 150, 1449
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 2 cut(s) 668, 1467
BseCI ATCGAT 2 cut(s) 207, 905
BseDI CCNNGG 2 cut(s) 1465, 1466
BseGI GGATG 4 cut(s) 28, 516, 1329, 1482
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 4 cut(s) 44, 662, 849, 1406
BseMI GCAATG 2 cut(s) 150, 1449
BseMII CTCAG 6 cut(s) 135, 200, 355, 897, 1196, 1283
BseNI ACTGG 5 cut(s) 200, 276, 607, 691, 1138
BseRI GAGGAG 2 cut(s) 222, 906
BseSI GKGCMC 2 cut(s) 166, 276
BseXI GCAGC 2 cut(s) 404, 658
BseYI CCCAGC 1 cut(s) 1543
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 5 cut(s) 184, 274, 666, 690, 917
BshNI GGYRCC 1 cut(s) 1109
BshVI ATCGAT 2 cut(s) 207, 905
BsiHKAI GWGCWC 2 cut(s) 166, 1559
BsiSI CCGG 3 cut(s) 38, 639, 990
BslFI GGGAC 3 cut(s) 62, 528, 621
BslI CCNNNNNNNGG 4 cut(s) 44, 662, 849, 1406
BsmAI GTCTC 2 cut(s) 1161, 1185
BsmFI GGGAC 3 cut(s) 62, 528, 621
BsnI GGCC 5 cut(s) 184, 274, 666, 690, 917
Bso31I GGTCTC 1 cut(s) 1185
Bsp120I GGGCCC 1 cut(s) 272
Bsp1286I GDGCHC 3 cut(s) 166, 276, 1559
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 5 cut(s) 28, 263, 971, 1328, 1430
BspACI CCGC 6 cut(s) 45, 417, 446, 749, 975, 1412
BspANI GGCC 5 cut(s) 184, 274, 666, 690, 917
BspCNI CTCAG 6 cut(s) 136, 199, 354, 896, 1195, 1284
BspDI ATCGAT 2 cut(s) 207, 905
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 2 cut(s) 225, 802
BspLI GGNNCC 4 cut(s) 274, 973, 1111, 1432
BspPI GGATC 6 cut(s) 36, 966, 979, 1336, 1425, 1438
BspT107I GGYRCC 1 cut(s) 1109
BspTNI GGTCTC 1 cut(s) 1185
BsrDI GCAATG 2 cut(s) 150, 1449
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 5 cut(s) 200, 276, 607, 691, 1138
BssECI CCNNGG 2 cut(s) 1465, 1466
BssMI GATC 5 cut(s) 28, 263, 971, 1328, 1430
BssNAI GTATAC 1 cut(s) 1131
Bst1107I GTATAC 1 cut(s) 1131
Bst2UI CCWGG 2 cut(s) 668, 1467
Bst4CI ACNGT 3 cut(s) 847, 968, 1360
Bst6I CTCTTC 1 cut(s) 69
BstAUI TGTACA 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 9 cut(s) 144, 186, 341, 745, 863, 883, 1182, 1292, 1506
BstF5I GGATG 4 cut(s) 28, 516, 1329, 1482
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 5 cut(s) 31, 266, 974, 1331, 1433
BstMAI GTCTC 2 cut(s) 1161, 1185
BstMBI GATC 5 cut(s) 28, 263, 971, 1328, 1430
BstMWI GCNNNNNNNGC 5 cut(s) 161, 365, 687, 821, 1418
BstNI CCWGG 2 cut(s) 668, 1467
BstNSI RCATGY 1 cut(s) 1201
BstSCI CCNGG 3 cut(s) 637, 666, 1465
BstSFI CTRYAG 1 cut(s) 1314
BstSLI GKGCMC 2 cut(s) 166, 276
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 404, 658
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 3 cut(s) 28, 971, 1430
BstYI RGATCY 3 cut(s) 28, 971, 1430
BstZ17I GTATAC 1 cut(s) 1131
Bsu15I ATCGAT 2 cut(s) 207, 905
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 5 cut(s) 184, 274, 666, 690, 917
BsuTUI ATCGAT 2 cut(s) 207, 905
BtgZI GCGATG 1 cut(s) 634
BtsCI GGATG 4 cut(s) 28, 516, 1329, 1482
BtsIMutI CAGTG 3 cut(s) 843, 973, 1047
Cac8I GCNNGC 1 cut(s) 390
CciI TCATGA 2 cut(s) 225, 802
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 3 cut(s) 35, 272, 273
ClaI ATCGAT 2 cut(s) 207, 905
Csp6I GTAC 2 cut(s) 214, 482
CspCI CAANNNNNGTGG 2 cut(s) 1431, 1466
CviAII CATG 5 cut(s) 180, 226, 803, 1126, 1198
CviQI GTAC 2 cut(s) 214, 482
DdeI CTNAG 9 cut(s) 144, 186, 341, 745, 863, 883, 1182, 1292, 1506
DpnI GATC 5 cut(s) 30, 265, 973, 1330, 1432
DpnII GATC 5 cut(s) 28, 263, 971, 1328, 1430
EaeI YGGCCR 2 cut(s) 664, 688
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 964
Eco24I GRGCYC 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 1185
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 150
Eco81I CCTNAGG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 666, 1465
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 5 cut(s) 183, 229, 806, 1129, 1201
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FaqI GGGAC 3 cut(s) 62, 528, 621
FatI CATG 5 cut(s) 179, 225, 802, 1125, 1197
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 1 cut(s) 532
FblI GTMKAC 1 cut(s) 1130
Fnu4HI GCNGC 3 cut(s) 393, 672, 750
FokI GGATG 4 cut(s) 35, 523, 1336, 1469
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 393, 672, 750
FspBI CTAG 1 cut(s) 1364
GlaI GCGC 1 cut(s) 44
GluI GCNGC 3 cut(s) 393, 672, 750
GsaI CCCAGC 1 cut(s) 1547
HaeIII GGCC 5 cut(s) 184, 274, 666, 690, 917
HapII CCGG 3 cut(s) 38, 639, 990
HhaI GCGC 1 cut(s) 45
Hin1II CATG 5 cut(s) 183, 229, 806, 1129, 1201
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 8 cut(s) 125, 229, 492, 642, 786, 826, 907, 1169
HpaII CCGG 3 cut(s) 38, 639, 990
HphI GGTGA 2 cut(s) 1186, 1426
Hpy166II GTNNAC 6 cut(s) 164, 216, 946, 1131, 1188, 1249
Hpy188I TCNGA 6 cut(s) 112, 130, 189, 364, 647, 1293
Hpy188III TCNNGA 5 cut(s) 226, 267, 656, 803, 1234
Hpy8I GTNNAC 6 cut(s) 164, 216, 946, 1131, 1188, 1249
HpyAV CCTTC 6 cut(s) 117, 246, 251, 255, 377, 539
HpyCH4III ACNGT 3 cut(s) 847, 968, 1360
HpyCH4V TGCA 9 cut(s) 164, 179, 392, 536, 575, 782, 902, 1229, 1442
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 365, 687, 821, 1418
HpyF3I CTNAG 9 cut(s) 144, 186, 341, 745, 863, 883, 1182, 1292, 1506
Hsp92II CATG 5 cut(s) 183, 229, 806, 1129, 1201
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 5 cut(s) 28, 263, 971, 1328, 1430
LmnI GCTCC 2 cut(s) 40, 290
Lsp1109I GCAGC 2 cut(s) 404, 658
LweI GCATC 2 cut(s) 404, 911
MaeI CTAG 1 cut(s) 1364
MaeIII GTNAC 1 cut(s) 1000
MalI GATC 5 cut(s) 30, 265, 973, 1330, 1432
MboI GATC 5 cut(s) 28, 263, 971, 1328, 1430
MboII GAAGA 8 cut(s) 86, 285, 324, 785, 830, 1114, 1217, 1453
MfeI CAATTG 2 cut(s) 1005, 1242
MflI RGATCY 3 cut(s) 28, 971, 1430
MhlI GDGCHC 3 cut(s) 166, 276, 1559
MlsI TGGCCA 1 cut(s) 666
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 4 cut(s) 223, 636, 820, 1163
MmeI TCCRAC 1 cut(s) 868
Mox20I TGGCCA 1 cut(s) 666
Mph1103I ATGCAT 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 1308
MscI TGGCCA 1 cut(s) 666
MseI TTAA 7 cut(s) 62, 303, 614, 695, 980, 1491, 1502
MslI CAYNNNNRTG 3 cut(s) 209, 966, 1064
Msp20I TGGCCA 1 cut(s) 666
MspI CCGG 3 cut(s) 38, 639, 990
MspR9I CCNGG 3 cut(s) 639, 668, 1467
MunI CAATTG 2 cut(s) 1005, 1242
MvaI CCWGG 2 cut(s) 668, 1467
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 5 cut(s) 161, 365, 687, 821, 1418
NciI CCSGG 1 cut(s) 639
NdeI CATATG 1 cut(s) 532
NdeII GATC 5 cut(s) 28, 263, 971, 1328, 1430
NlaIII CATG 5 cut(s) 183, 229, 806, 1129, 1201
NlaIV GGNNCC 4 cut(s) 274, 973, 1111, 1432
NmuCI GTSAC 1 cut(s) 1000
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 1201
PagI TCATGA 2 cut(s) 225, 802
PasI CCCWGGG 1 cut(s) 1466
PdmI GAANNNNTTC 1 cut(s) 1308
PfeI GAWTC 4 cut(s) 125, 492, 786, 907
PflMI CCANNNNNTGG 3 cut(s) 662, 849, 1406
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 3 cut(s) 394, 673, 751
PleI GAGTC 4 cut(s) 223, 636, 820, 1163
PpsI GAGTC 4 cut(s) 223, 636, 820, 1163
PshBI ATTAAT 1 cut(s) 614
PsiI TTATAA 1 cut(s) 1538
Psp6I CCWGG 2 cut(s) 666, 1465
PspFI CCCAGC 1 cut(s) 1543
PspGI CCWGG 2 cut(s) 666, 1465
PspN4I GGNNCC 4 cut(s) 274, 973, 1111, 1432
PspOMI GGGCCC 1 cut(s) 272
PspPI GGNCC 3 cut(s) 35, 272, 273
PsuI RGATCY 3 cut(s) 28, 971, 1430
RsaI GTAC 2 cut(s) 215, 483
RsaNI GTAC 2 cut(s) 214, 482
RseI CAYNNNNRTG 3 cut(s) 209, 966, 1064
SaqAI TTAA 7 cut(s) 62, 303, 614, 695, 980, 1491, 1502
SatI GCNGC 3 cut(s) 393, 672, 750
Sau3AI GATC 5 cut(s) 28, 263, 971, 1328, 1430
Sau96I GGNCC 3 cut(s) 35, 272, 273
SchI GAGTC 4 cut(s) 223, 636, 820, 1163
ScrFI CCNGG 3 cut(s) 639, 668, 1467
SduI GDGCHC 3 cut(s) 166, 276, 1559
SfaNI GCATC 2 cut(s) 404, 911
SfcI CTRYAG 1 cut(s) 1314
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 3 cut(s) 209, 966, 1064
SsiI CCGC 6 cut(s) 45, 417, 446, 749, 975, 1412
SspI AATATT 1 cut(s) 756
SspMI CTAG 1 cut(s) 1364
StyD4I CCNGG 3 cut(s) 637, 666, 1465
TaaI ACNGT 3 cut(s) 847, 968, 1360
TaqI TCGA 2 cut(s) 207, 905
TatI WGTACW 2 cut(s) 213, 481
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 4 cut(s) 125, 492, 786, 907
Tru1I TTAA 7 cut(s) 62, 303, 614, 695, 980, 1491, 1502
Tru9I TTAA 7 cut(s) 62, 303, 614, 695, 980, 1491, 1502
TscAI CASTG 3 cut(s) 850, 973, 1047
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 2 cut(s) 392, 671
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 6 cut(s) 87, 456, 819, 950, 1114, 1566
TspRI CASTG 3 cut(s) 850, 973, 1047
Van91I CCANNNNNTGG 3 cut(s) 662, 849, 1406
VneI GTGCAC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 35
VspI ATTAAT 1 cut(s) 614
XapI RAATTY 4 cut(s) 424, 606, 807, 1208
XceI RCATGY 1 cut(s) 1201
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 1130
XmnI GAANNNNTTC 1 cut(s) 1308
XspI CTAG 1 cut(s) 1364
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.