Rmu_sc0000382.1_g000025

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000382.1
OG0017854
Physical Location & Seq
Forward (+)
133550 .. 135980
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000382.1_g000025.1.cds

Sequence Viewer

Length: 456 bp
atggtggtgttccatgtggtgtgtctcaggacaacgcgggtcggcagcatggcggcgtgccccgggacgacgcaggttagcaacatggcagagtgggtcggacgaactcggccgggggtgacgtatggcgagggagacgagaagatggtggactgggcccaaatccagctgctgggcctggagtgctccccttggatgatgcacgacgtggccaacgacgacccatattttgttcagacaagagatgctactgggagagtcagcttatccactgaacaaaagcttacatgtgccatgaggatgctcgtgtatggcatcaatactgacttctgcgatgattacctagatattgtgaagtccactaccattgagattttagagcacttcacgaaagcaatttggaatgtgtaccatgagacttacctccgccaaccaacactggcagatttgcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

151

Amino Acids

17.19

Weight (kDa)

5.08

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 172
AccII CGCG 1 cut(s) 37
AciI CCGC 3 cut(s) 37, 53, 427
AcoI YGGCCR 2 cut(s) 110, 210
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 287
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 3 cut(s) 169, 264, 283
AluI AGCT 3 cut(s) 169, 264, 283
Alw21I GWGCWC 2 cut(s) 188, 384
Alw26I GTCTC 3 cut(s) 29, 129, 410
AlwNI CAGNNNCTG 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 4 cut(s) 110, 156, 175, 210
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 45, 169
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspS9I GGNCC 3 cut(s) 156, 157, 175
AsuC2I CCSGG 3 cut(s) 63, 64, 114
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 62
BaeGI GKGCMC 2 cut(s) 62, 160
BalI TGGCCA 1 cut(s) 212
BanII GRGCYC 1 cut(s) 160
BauI CACGAG 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 188, 384
BbvI GCAGC 2 cut(s) 57, 156
BccI CCATC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 3 cut(s) 63, 64, 114
BcoDI GTCTC 3 cut(s) 29, 129, 410
BfaI CTAG 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 3 cut(s) 46, 54, 170
BlsI GCNGC 3 cut(s) 47, 55, 171
Bme1390I CCNGG 4 cut(s) 63, 64, 114, 179
BmeT110I CYCGRG 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 3 cut(s) 156, 157, 175
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 4 cut(s) 63, 64, 114, 179
BmrI ACTGGG 2 cut(s) 163, 261
BmsI GCATC 4 cut(s) 189, 235, 291, 324
BmuI ACTGGG 2 cut(s) 163, 261
BpmI CTGGAG 1 cut(s) 200
BpuMI CCSGG 3 cut(s) 63, 64, 114
BsaJI CCNNGG 4 cut(s) 61, 62, 113, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 3 cut(s) 158, 256, 444
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 4 cut(s) 61, 62, 113, 191
BseGI GGATG 2 cut(s) 201, 306
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 3 cut(s) 158, 256, 444
BseSI GKGCMC 2 cut(s) 62, 160
BseX3I CGGCCG 1 cut(s) 110
BseXI GCAGC 2 cut(s) 57, 156
BseYI CCCAGC 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 112, 158, 177, 212
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 188, 384
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 63, 113
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 3 cut(s) 29, 129, 410
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 4 cut(s) 112, 158, 177, 212
BsoBI CYCGRG 1 cut(s) 62
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 4 cut(s) 62, 160, 188, 384
BspACI CCGC 3 cut(s) 37, 53, 427
BspANI GGCC 4 cut(s) 112, 158, 177, 212
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 64
BsrI ACTGG 3 cut(s) 158, 256, 444
BssECI CCNNGG 4 cut(s) 61, 62, 113, 191
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 201, 306
BstFNI CGCG 1 cut(s) 37
BstMAI GTCTC 3 cut(s) 29, 129, 410
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 4 cut(s) 61, 62, 112, 177
BstSLI GKGCMC 2 cut(s) 62, 160
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 57, 156
BstZI CGGCCG 1 cut(s) 110
BsuRI GGCC 4 cut(s) 112, 158, 177, 212
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 201, 306
BtsIMutI CAGTG 2 cut(s) 270, 437
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 156, 157, 175
Cfr9I CCCGGG 1 cut(s) 62
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 409
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 6 cut(s) 14, 49, 85, 288, 295, 413
CviJI RGCY 7 cut(s) 112, 158, 169, 177, 212, 264, 283
CviKI_1 RGCY 7 cut(s) 112, 158, 169, 177, 212, 264, 283
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 1 cut(s) 26
DraIII CACNNNGTG 1 cut(s) 208
EaeI YGGCCR 2 cut(s) 110, 210
EagI CGGCCG 1 cut(s) 110
EciI GGCGGA 1 cut(s) 416
EclXI CGGCCG 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 191
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 6 cut(s) 17, 52, 88, 291, 298, 416
FaiI YATR 9 cut(s) 15, 50, 86, 126, 226, 289, 296, 312, 414
FaqI GGGAC 1 cut(s) 79
FatI CATG 6 cut(s) 13, 48, 84, 287, 294, 412
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 46, 54, 170
FokI GGATG 2 cut(s) 208, 313
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 46, 54, 170
FspBI CTAG 1 cut(s) 344
GluI GCNGC 3 cut(s) 46, 54, 170
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 4 cut(s) 112, 158, 177, 212
HapII CCGG 2 cut(s) 63, 113
HgaI GACGC 1 cut(s) 79
Hin1II CATG 6 cut(s) 17, 52, 88, 291, 298, 416
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 1 cut(s) 258
HpaII CCGG 2 cut(s) 63, 113
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 3 cut(s) 151, 360, 409
Hpy188I TCNGA 2 cut(s) 101, 237
Hpy188III TCNNGA 2 cut(s) 28, 388
Hpy8I GTNNAC 3 cut(s) 151, 360, 409
Hpy99I CGWCG 3 cut(s) 73, 209, 221
HpyCH4IV ACGT 2 cut(s) 122, 207
HpyCH4V TGCA 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 2 cut(s) 122, 207
Hsp92II CATG 6 cut(s) 17, 52, 88, 291, 298, 416
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 2 cut(s) 57, 156
LweI GCATC 4 cut(s) 189, 235, 291, 324
MaeI CTAG 1 cut(s) 344
MaeII ACGT 2 cut(s) 122, 207
MaeIII GTNAC 1 cut(s) 118
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 4 cut(s) 62, 160, 188, 384
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 1 cut(s) 396
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 3 cut(s) 124, 291, 434
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 2 cut(s) 63, 113
MspR9I CCNGG 4 cut(s) 63, 64, 114, 179
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 183
NciI CCSGG 3 cut(s) 63, 64, 114
NlaIII CATG 6 cut(s) 17, 52, 88, 291, 298, 416
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 291
PciI ACATGT 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 3 cut(s) 47, 55, 171
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PscI ACATGT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 158
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 3 cut(s) 156, 157, 175
PstNI CAGNNNCTG 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 299
SatI GCNGC 3 cut(s) 46, 54, 170
Sau96I GGNCC 3 cut(s) 156, 157, 175
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 4 cut(s) 63, 64, 114, 179
SduI GDGCHC 4 cut(s) 62, 160, 188, 384
SetI ASST 8 cut(s) 78, 125, 171, 210, 266, 285, 345, 426
SfaNI GCATC 4 cut(s) 189, 235, 291, 324
SmaI CCCGGG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 1 cut(s) 396
SsiI CCGC 3 cut(s) 37, 53, 427
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 4 cut(s) 61, 62, 112, 177
StyI CCWWGG 1 cut(s) 191
TaiI ACGT 2 cut(s) 125, 210
TasI AATT 1 cut(s) 396
TauI GCSGC 1 cut(s) 56
TscAI CASTG 2 cut(s) 277, 444
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 45, 169
Tsp45I GTSAC 1 cut(s) 118
TspMI CCCGGG 1 cut(s) 62
TspRI CASTG 2 cut(s) 277, 444
Van91I CCANNNNNTGG 1 cut(s) 172
XceI RCATGY 1 cut(s) 291
XmaI CCCGGG 1 cut(s) 62
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.