Rmu_sc0001585.1_g000013

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001585.1
OG0017854
Physical Location & Seq
Forward (+)
48160 .. 48645
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001585.1_g000013.1.cds

Sequence Viewer

Length: 486 bp
atggttgcagaaagatcaagaagaagccgtcgacgagccttgatgatgtcttccgctgccttgcaaatccaaactctggaagttgaggattcacaatggggtggttcttcagaatgtcgtacctataaggccagggatcgagagttgatggatattctactcaaagctcaatacttcacggatccatgcaggtatgaaccaaacatatttcgtaggcgatatagaatgcaacattgggtctttgacaggatgatgcgcgacgtggccaactacgacccatattttgttcaaacaagagatgcttgtgggagactaagcttatccactgaacaaaagctgacatgcgccatgagaatgctcgcgtatggcatcacagctgatttctgcgatgattacctagatattgcgaagaccactaccattgagatttttgagcacttcacaaaagcaatctggaatgtgtaccatgagacttacctccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

161

Amino Acids

19.32

Weight (kDa)

8.61

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 76
AccI GTMKAC 1 cut(s) 31
AccII CGCG 2 cut(s) 258, 362
AciI CCGC 2 cut(s) 54, 481
AclWI GGATC 3 cut(s) 144, 176, 189
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 121, 464
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 290
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 131
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
AluBI AGCT 4 cut(s) 167, 318, 337, 377
AluI AGCT 4 cut(s) 167, 318, 337, 377
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 2 cut(s) 304, 464
AlwI GGATC 3 cut(s) 144, 176, 189
AoxI GGCC 2 cut(s) 129, 264
ApeKI GCWGC 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspLEI GCGC 2 cut(s) 258, 347
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 181
BbsI GAAGAC 2 cut(s) 42, 416
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 304, 464
BfaI CTAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 3 cut(s) 243, 289, 378
BpiI GAAGAC 2 cut(s) 42, 416
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 2 cut(s) 258, 362
BshFI GGCC 2 cut(s) 131, 266
BsiHKAI GWGCWC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 304, 464
BsmI GAATGC 2 cut(s) 231, 360
BsnI GGCC 2 cut(s) 131, 266
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 3 cut(s) 14, 136, 181
BspACI CCGC 2 cut(s) 54, 481
BspANI GGCC 2 cut(s) 131, 266
BspFNI CGCG 2 cut(s) 258, 362
BspLI GGNNCC 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 3 cut(s) 144, 176, 189
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 14, 136, 181
Bst2UI CCWGG 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 258, 362
BstHHI GCGC 2 cut(s) 258, 347
BstKTI GATC 3 cut(s) 17, 139, 184
BstMAI GTCTC 2 cut(s) 304, 464
BstMBI GATC 3 cut(s) 14, 136, 181
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 131
BstUI CGCG 2 cut(s) 258, 362
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 42, 416
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 2 cut(s) 131, 266
BtgZI GCGATG 1 cut(s) 402
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 2 cut(s) 258, 347
Csp6I GTAC 2 cut(s) 120, 463
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 4 cut(s) 186, 342, 349, 467
CviJI RGCY 8 cut(s) 27, 38, 131, 167, 266, 318, 337, 377
CviKI_1 RGCY 8 cut(s) 27, 38, 131, 167, 266, 318, 337, 377
CviQI GTAC 2 cut(s) 120, 463
DdeI CTNAG 1 cut(s) 314
DpnI GATC 3 cut(s) 16, 138, 183
DpnII GATC 3 cut(s) 14, 136, 181
EaeI YGGCCR 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 131
FaeI CATG 4 cut(s) 189, 345, 352, 470
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FatI CATG 4 cut(s) 185, 341, 348, 466
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 398
GlaI GCGC 2 cut(s) 257, 346
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 2 cut(s) 131, 266
HhaI GCGC 2 cut(s) 258, 347
Hin1II CATG 4 cut(s) 189, 345, 352, 470
Hin6I GCGC 2 cut(s) 256, 345
HinP1I GCGC 2 cut(s) 256, 345
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 32, 463
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 4 cut(s) 18, 77, 140, 454
Hpy8I GTNNAC 2 cut(s) 32, 463
Hpy99I CGWCG 3 cut(s) 33, 36, 263
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 4 cut(s) 8, 64, 189, 229
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 189, 345, 352, 470
HspAI GCGC 2 cut(s) 256, 345
Kzo9I GATC 3 cut(s) 14, 136, 181
LpnPI CCDG 6 cut(s) 62, 118, 145, 175, 232, 439
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 3 cut(s) 243, 289, 378
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 261
MalI GATC 3 cut(s) 16, 138, 183
MboI GATC 3 cut(s) 14, 136, 181
MboII GAAGA 4 cut(s) 33, 42, 99, 421
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 438
MlsI TGGCCA 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 266
MnlI CCTC 1 cut(s) 79
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 3 cut(s) 56, 377, 483
MspR9I CCNGG 1 cut(s) 133
Mva1269I GAATGC 2 cut(s) 231, 360
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 2 cut(s) 258, 362
NdeII GATC 3 cut(s) 14, 136, 181
NlaIII CATG 4 cut(s) 189, 345, 352, 470
NlaIV GGNNCC 1 cut(s) 183
NspI RCATGY 1 cut(s) 345
PctI GAATGC 2 cut(s) 231, 360
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 2 cut(s) 121, 464
RsaNI GTAC 2 cut(s) 120, 463
RseI CAYNNNNRTG 1 cut(s) 353
SalI GTCGAC 1 cut(s) 30
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 3 cut(s) 14, 136, 181
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 438
SetI ASST 9 cut(s) 125, 169, 194, 264, 320, 339, 379, 399, 480
SfaNI GCATC 3 cut(s) 243, 289, 378
SgrDI CGTCGACG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 353
SsiI CCGC 2 cut(s) 54, 481
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 131
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 31, 139
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 1 cut(s) 331
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 76
XceI RCATGY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.