Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017854

Physical Location & Seq

Genomic Coordinates Reverse (-)

74377089 .. 74377553

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G042490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCTGTTGCTGCCTTGCAAATCCAAACTCTGGAAGATGAGGATTCACAATGGGGTGGTTCTTCAGAAGGTCGTACCTATAAGGCCAGGGATCGAGAGCTGATGGATCTTCGACTCAAAGCTCAATACTTCACGGATCCGTGCAGGTATGAACCAAACATATTTCGCAGGCGATATAGAATGCAACCTTGGGTCTTTGACAAGATGATGCGCGATGTGGCCAACTACGACCCATATTTTGTTCAAACAAGAGATGCTTGTGGGAGACTCAGCTTATTCACTGAACAAAAGCTGACATGCGCCATGAGAATGCTCGCGTATGGCATCACAGCTGATTTCTGTGATGATTACCTAGATATTGCGAAGACCACTGCCATTGAGATTTTTGAGCACTTCACAAAAGCAATCTGGAATGTGTACCATGAGACTTACCTCCGCCGACCAACACTGGAATGTGTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

154

Amino Acids

18.35

Weight (kDa)

5.73

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017854)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000382.1_g000025 Rmu_sc0001585.1_g000013 Rmu_sc0007840.1_g000006 Rmu_sc0014846.1_g000005 Rmu_ssc0000110.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154160
rosa_samantha	Rh4CG257400 Rh5AG247700 Rh5CG279200
rosa_wichuraiana	Rw5G042490 Rw6G014320 Rw7G040230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	2 cut(s)	213, 317
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	4 cut(s)	99, 114, 131, 144
AcoI	YGGCCR	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	3 cut(s)	76, 419, 459
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	5 cut(s)	100, 122, 273, 292, 332
AluI	AGCT	5 cut(s)	100, 122, 273, 292, 332
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	259, 419
AlwI	GGATC	4 cut(s)	99, 114, 131, 144
AoxI	GGCC	2 cut(s)	84, 219
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	2 cut(s)	213, 302
BalI	TGGCCA	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	393
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	259, 419
BfaI	CTAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	3 cut(s)	198, 244, 333
BpiI	GAAGAC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	87, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	87, 188
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	163
Bsh1236I	CGCG	2 cut(s)	213, 317
BshFI	GGCC	2 cut(s)	86, 221
BsiHKAI	GWGCWC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	259, 419
BsmI	GAATGC	2 cut(s)	186, 315
BsnI	GGCC	2 cut(s)	86, 221
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	91, 106, 136
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	2 cut(s)	86, 221
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	2 cut(s)	213, 317
BspLI	GGNNCC	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	4 cut(s)	99, 114, 131, 144
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	2 cut(s)	87, 188
BssMI	GATC	3 cut(s)	91, 106, 136
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	170, 315
BstDEI	CTNAG	1 cut(s)	269
BstFNI	CGCG	2 cut(s)	213, 317
BstHHI	GCGC	2 cut(s)	213, 302
BstKTI	GATC	3 cut(s)	94, 109, 139
BstMAI	GTCTC	2 cut(s)	259, 419
BstMBI	GATC	3 cut(s)	91, 106, 136
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	2 cut(s)	213, 317
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	2 cut(s)	106, 136
BstYI	RGATCY	2 cut(s)	106, 136
BsuRI	GGCC	2 cut(s)	86, 221
BtgZI	GCGATG	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	279, 369, 446
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	170, 315
CfoI	GCGC	2 cut(s)	213, 302
Csp6I	GTAC	3 cut(s)	75, 418, 458
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	4 cut(s)	297, 304, 422, 462
CviJI	RGCY	7 cut(s)	86, 100, 122, 221, 273, 292, 332
CviKI_1	RGCY	7 cut(s)	86, 100, 122, 221, 273, 292, 332
CviQI	GTAC	3 cut(s)	75, 418, 458
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	3 cut(s)	93, 108, 138
DpnII	GATC	3 cut(s)	91, 106, 136
EaeI	YGGCCR	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	4 cut(s)	300, 307, 425, 465
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FatI	CATG	4 cut(s)	296, 303, 421, 461
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	2 cut(s)	212, 301
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	86, 221
HhaI	GCGC	2 cut(s)	213, 302
Hin1II	CATG	4 cut(s)	300, 307, 425, 465
Hin6I	GCGC	2 cut(s)	211, 300
HinP1I	GCGC	2 cut(s)	211, 300
HinfI	GANTC	3 cut(s)	44, 114, 267
Hpy166II	GTNNAC	2 cut(s)	418, 458
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	32, 95, 409
Hpy8I	GTNNAC	2 cut(s)	418, 458
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	19, 144, 184
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	300, 307, 425, 465
HspAI	GCGC	2 cut(s)	211, 300
Kzo9I	GATC	3 cut(s)	91, 106, 136
LpnPI	CCDG	7 cut(s)	17, 73, 100, 130, 154, 394, 434
LweI	GCATC	3 cut(s)	198, 244, 333
MaeI	CTAG	1 cut(s)	353
MalI	GATC	3 cut(s)	93, 108, 138
MboI	GATC	3 cut(s)	91, 106, 136
MboII	GAAGA	4 cut(s)	47, 54, 101, 376
MflI	RGATCY	2 cut(s)	106, 136
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	108, 261
MnlI	CCTC	2 cut(s)	34, 443
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
MslI	CAYNNNNRTG	2 cut(s)	308, 451
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	2 cut(s)	186, 315
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	2 cut(s)	213, 317
NdeII	GATC	3 cut(s)	91, 106, 136
NlaIII	CATG	4 cut(s)	300, 307, 425, 465
NlaIV	GGNNCC	1 cut(s)	138
NspI	RCATGY	1 cut(s)	300
PctI	GAATGC	2 cut(s)	186, 315
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	108, 261
PpsI	GAGTC	2 cut(s)	108, 261
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	106, 136
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	76, 419, 459
RsaNI	GTAC	3 cut(s)	75, 418, 458
RseI	CAYNNNNRTG	2 cut(s)	308, 451
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	91, 106, 136
SchI	GAGTC	2 cut(s)	108, 261
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	3 cut(s)	198, 244, 333
SmiMI	CAYNNNNRTG	2 cut(s)	308, 451
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	188
TaqI	TCGA	2 cut(s)	94, 112
TfiI	GAWTC	1 cut(s)	44
TscAI	CASTG	3 cut(s)	286, 376, 453
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	2 cut(s)	129, 149
TspRI	CASTG	3 cut(s)	286, 376, 453
Van91I	CCANNNNNTGG	1 cut(s)	31
XceI	RCATGY	1 cut(s)	300
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.