Rmu_ssc0000110.1_g000006

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000110.1
OG0017854
Physical Location & Seq
Forward (+)
15707 .. 16192
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000110.1_g000006.1.cds

Sequence Viewer

Length: 360 bp
atggttgcagaaagatcaagaagaagccatcgacaagccttgatgatgtcttccgctgccttgcaaatccaaactctggaagttgaggattcacaatggggtggttcttcagaaggtcgtacctataaggccagggatcgagatctgatggatcttcgactcaaagctcaatacttcactgatctgtgtagcttatccactgaacaaaaacttacatgcgccatgagaatgctcgcgtatggcatcacagctgatttctgcgatgattacctagatattgcgaagaccactaccattgagatttttgagcacttcacaaaagcaatctggaatgtgtaccatgagacttacctccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

119

Amino Acids

13.86

Weight (kDa)

5.89

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 236
AciI CCGC 2 cut(s) 54, 355
AclWI GGATC 2 cut(s) 144, 159
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 121, 338
AfiI CCNNNNNNNGG 1 cut(s) 76
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 3 cut(s) 167, 192, 251
AluI AGCT 3 cut(s) 167, 192, 251
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 144, 159
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 42, 290
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 36, 142
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 142
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 42, 290
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 5 cut(s) 14, 136, 142, 151, 181
BspACI CCGC 2 cut(s) 54, 355
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 236
BspPI GGATC 2 cut(s) 144, 159
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 5 cut(s) 14, 136, 142, 151, 181
Bst2UI CCWGG 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 234
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 5 cut(s) 17, 139, 145, 154, 184
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 5 cut(s) 14, 136, 142, 151, 181
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 131
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 42, 290
BstX2I RGATCY 2 cut(s) 142, 151
BstYI RGATCY 2 cut(s) 142, 151
BsuRI GGCC 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 177, 198
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 120, 337
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 3 cut(s) 216, 223, 341
CviJI RGCY 6 cut(s) 27, 38, 131, 167, 192, 251
CviKI_1 RGCY 6 cut(s) 27, 38, 131, 167, 192, 251
CviQI GTAC 2 cut(s) 120, 337
DpnI GATC 5 cut(s) 16, 138, 144, 153, 183
DpnII GATC 5 cut(s) 14, 136, 142, 151, 181
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 131
FaeI CATG 3 cut(s) 219, 226, 344
FaiI YATR 5 cut(s) 126, 217, 224, 240, 342
FatI CATG 3 cut(s) 215, 222, 340
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 221
Hin1II CATG 3 cut(s) 219, 226, 344
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 2 cut(s) 89, 159
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 112, 147
Hpy188III TCNNGA 4 cut(s) 18, 77, 140, 328
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 8, 64
Hsp92II CATG 3 cut(s) 219, 226, 344
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 5 cut(s) 14, 136, 142, 151, 181
LpnPI CCDG 4 cut(s) 62, 118, 145, 313
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 272
MalI GATC 5 cut(s) 16, 138, 144, 153, 183
MboI GATC 5 cut(s) 14, 136, 142, 151, 181
MboII GAAGA 5 cut(s) 33, 42, 99, 146, 295
MflI RGATCY 2 cut(s) 142, 151
MhlI GDGCHC 1 cut(s) 312
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 3 cut(s) 56, 251, 357
MspR9I CCNGG 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 236
NdeII GATC 5 cut(s) 14, 136, 142, 151, 181
NlaIII CATG 3 cut(s) 219, 226, 344
NspI RCATGY 1 cut(s) 219
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PsuI RGATCY 2 cut(s) 142, 151
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 121, 338
RsaNI GTAC 2 cut(s) 120, 337
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 5 cut(s) 14, 136, 142, 151, 181
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 118, 125, 169, 194, 253, 273, 354
SfaNI GCATC 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 227
SsiI CCGC 2 cut(s) 54, 355
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 131
TaqI TCGA 3 cut(s) 31, 139, 157
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 2 cut(s) 184, 205
TseI GCWGC 1 cut(s) 56
TspRI CASTG 2 cut(s) 184, 205
Van91I CCANNNNNTGG 1 cut(s) 76
XceI RCATGY 1 cut(s) 219
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.