Rw6G014320

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017854
Physical Location & Seq
Forward (+)
26474090 .. 26474551
462 bp
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UTR
Exon/CDS
Intron
Rw6G014320.1

Sequence Viewer

Length: 462 bp
ATGATGTCTGCCGCTGCCTTGCAAATCCAAACTCTGGAAGATGAGGATTCACAATGGGGTGGTTCTTCAGAAGGTCGTGCCTATAAGGCCAAGGATCGAGAGTTGATGGATCTTCGACTCAAAGCTCAATACTTCACGGATCCATGCAGGTATGAACCAAACATATTTCGTAGGCGATATAGAATGCAACCTTGGGTCTTTGACATGATGATGCGCGACGTGGCCAACTACGACCCATATTTTGTTCAAACAAGAGATGTTTGTGGGAGACTAAGCTTATCCACTGAACAAAAGCTGACATGCCCCATGAGAATGCTCGCGTATGGCATCACAACTGATTTCTGCGATGATTACCTAGATATTGCGAAGACCACTGCCATTGAGATTTTTGAGCACTTCACAAAAGCAATCTGGAATATGTACCATGAGACTTACCTCCGCCGACCAACACCAACAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

153

Amino Acids

18.22

Weight (kDa)

5.45

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 2 cut(s) 216, 320
AciI CCGC 2 cut(s) 12, 439
AclWI GGATC 4 cut(s) 102, 117, 134, 147
AcoI YGGCCR 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 248
AjiI CACGTC 1 cut(s) 220
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 3 cut(s) 125, 276, 295
AluI AGCT 3 cut(s) 125, 276, 295
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 2 cut(s) 262, 422
AlwI GGATC 4 cut(s) 102, 117, 134, 147
AoxI GGCC 2 cut(s) 87, 222
ApeKI GCWGC 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 224
BamHI GGATCC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 396
BccI CCATC 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 262, 422
BfaI CTAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 138
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 12, 15
BlsI GCNGC 2 cut(s) 13, 16
BmgBI CACGTC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 2 cut(s) 201, 336
BpiI GAAGAC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 90, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 90, 191
BseLI CCNNNNNNNGG 1 cut(s) 34
Bsh1236I CGCG 2 cut(s) 216, 320
BshFI GGCC 2 cut(s) 89, 224
BsiHKAI GWGCWC 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 262, 422
BsmI GAATGC 2 cut(s) 189, 318
BsnI GGCC 2 cut(s) 89, 224
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 94, 109, 139
BspACI CCGC 2 cut(s) 12, 439
BspANI GGCC 2 cut(s) 89, 224
BspFNI CGCG 2 cut(s) 216, 320
BspLI GGNNCC 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 138
BspPI GGATC 4 cut(s) 102, 117, 134, 147
BssECI CCNNGG 2 cut(s) 90, 191
BssMI GATC 3 cut(s) 94, 109, 139
BssT1I CCWWGG 2 cut(s) 90, 191
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 272
BstFNI CGCG 2 cut(s) 216, 320
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 3 cut(s) 97, 112, 142
BstMAI GTCTC 2 cut(s) 262, 422
BstMBI GATC 3 cut(s) 94, 109, 139
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 303
BstUI CGCG 2 cut(s) 216, 320
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 109, 139
BstYI RGATCY 2 cut(s) 109, 139
BsuRI GGCC 2 cut(s) 89, 224
BtgZI GCGATG 1 cut(s) 360
BtrI CACGTC 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 282, 372
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 5 cut(s) 144, 205, 300, 307, 425
CviJI RGCY 5 cut(s) 89, 125, 224, 276, 295
CviKI_1 RGCY 5 cut(s) 89, 125, 224, 276, 295
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 1 cut(s) 272
DpnI GATC 3 cut(s) 96, 111, 141
DpnII GATC 3 cut(s) 94, 109, 139
EaeI YGGCCR 1 cut(s) 222
EciI GGCGGA 1 cut(s) 428
Eco130I CCWWGG 2 cut(s) 90, 191
Eco57I CTGAAG 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 90, 191
ErhI CCWWGG 2 cut(s) 90, 191
FaeI CATG 5 cut(s) 147, 208, 303, 310, 428
FatI CATG 5 cut(s) 143, 204, 299, 306, 424
Fnu4HI GCNGC 2 cut(s) 12, 15
Fsp4HI GCNGC 2 cut(s) 12, 15
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 215
GluI GCNGC 2 cut(s) 12, 15
HaeIII GGCC 2 cut(s) 89, 224
HhaI GCGC 1 cut(s) 216
Hin1II CATG 5 cut(s) 147, 208, 303, 310, 428
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 2 cut(s) 47, 117
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 3 cut(s) 35, 98, 412
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 3 cut(s) 22, 147, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 5 cut(s) 147, 208, 303, 310, 428
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 3 cut(s) 94, 109, 139
LpnPI CCDG 3 cut(s) 20, 133, 397
LweI GCATC 2 cut(s) 201, 336
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 219
MalI GATC 3 cut(s) 96, 111, 141
MboI GATC 3 cut(s) 94, 109, 139
MboII GAAGA 4 cut(s) 50, 57, 104, 379
MflI RGATCY 2 cut(s) 109, 139
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 224
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 2 cut(s) 37, 446
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MslI CAYNNNNRTG 2 cut(s) 209, 311
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 14
Mva1269I GAATGC 2 cut(s) 189, 318
MvnI CGCG 2 cut(s) 216, 320
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 3 cut(s) 94, 109, 139
NlaIII CATG 5 cut(s) 147, 208, 303, 310, 428
NlaIV GGNNCC 1 cut(s) 141
NspI RCATGY 1 cut(s) 303
PctI GAATGC 2 cut(s) 189, 318
PfeI GAWTC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 2 cut(s) 13, 16
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 141
PsuI RGATCY 2 cut(s) 109, 139
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 2 cut(s) 209, 311
SatI GCNGC 2 cut(s) 12, 15
Sau3AI GATC 3 cut(s) 94, 109, 139
SchI GAGTC 1 cut(s) 111
SduI GDGCHC 1 cut(s) 396
SetI ASST 9 cut(s) 76, 127, 152, 193, 222, 278, 297, 357, 438
SfaNI GCATC 2 cut(s) 201, 336
SmiMI CAYNNNNRTG 2 cut(s) 209, 311
SsiI CCGC 2 cut(s) 12, 439
SspMI CTAG 1 cut(s) 356
StyI CCWWGG 2 cut(s) 90, 191
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 97, 115
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 47
TscAI CASTG 2 cut(s) 289, 379
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 289, 379
Van91I CCANNNNNTGG 1 cut(s) 34
XceI RCATGY 1 cut(s) 303
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.