Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017854

Physical Location & Seq

Genomic Coordinates Reverse (-)

62374061 .. 62374504

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATGTTTGCTGCTGCCTTGCAAATCCAAACTCTGGAAGATGAGGATTCACAATGGGGTGGTTCTTCAGAAGGTCGTACCTATAAGGCCAGGGATCGAGAGCTGATGGATCTTCGACTCAAAGCTCAATACTTCACTGATCCGTGCAGGTATGAACCAAACATATTTCGTAGGCGATATAGAATGCAACCTTGGGTCTTTGACAAGATGATGCGTGACGTGGCCAATTACGACCCATATTTTGTTCAAACAAGAGATGCTTGTGGGAGACTCAGCTTATCCACTGACCAAAAGCTGACATGCCCCATGAGAATGCTCGCGTATGGCATCACAGCTGATTTTTGTGATGATTACCTAGATATTGCGAAGACCACTGCCATTGAGATTTTTGAGCACTTCACAAAAGCAATATGGAATGTGTACCATGAGACTTACCTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

147

Amino Acids

17.57

Weight (kDa)

5.7

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017854)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000382.1_g000025 Rmu_sc0001585.1_g000013 Rmu_sc0007840.1_g000006 Rmu_sc0014846.1_g000005 Rmu_ssc0000110.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154160
rosa_samantha	Rh4CG257400 Rh5AG247700 Rh5CG279200
rosa_wichuraiana	Rw5G042490 Rw6G014320 Rw7G040230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccII	CGCG	1 cut(s)	320
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	3 cut(s)	102, 117, 134
AcoI	YGGCCR	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	79, 422
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	89
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	5 cut(s)	103, 125, 276, 295, 335
AluI	AGCT	5 cut(s)	103, 125, 276, 295, 335
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	262, 422
AlwI	GGATC	3 cut(s)	102, 117, 134
AoxI	GGCC	2 cut(s)	87, 222
ApeKI	GCWGC	2 cut(s)	11, 14
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
BalI	TGGCCA	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	262, 422
BfaI	CTAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	12, 15
BlsI	GCNGC	2 cut(s)	13, 16
Bme1390I	CCNGG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	201, 247, 336
BpiI	GAAGAC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	90, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	90, 191
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	89, 224
BsiHKAI	GWGCWC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	262, 422
BsmI	GAATGC	2 cut(s)	189, 318
BsnI	GGCC	2 cut(s)	89, 224
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	94, 109, 139
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	89, 224
BspCNI	CTCAG	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	320
BspMI	ACCTGC	1 cut(s)	138
BspPI	GGATC	3 cut(s)	102, 117, 134
BssECI	CCNNGG	2 cut(s)	90, 191
BssMI	GATC	3 cut(s)	94, 109, 139
BssT1I	CCWWGG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	320
BstKTI	GATC	3 cut(s)	97, 112, 142
BstMAI	GTCTC	2 cut(s)	262, 422
BstMBI	GATC	3 cut(s)	94, 109, 139
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	89, 224
BtrI	CACGTC	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	3 cut(s)	135, 282, 372
BveI	ACCTGC	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	78, 421
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	3 cut(s)	300, 307, 425
CviJI	RGCY	7 cut(s)	89, 103, 125, 224, 276, 295, 335
CviKI_1	RGCY	7 cut(s)	89, 103, 125, 224, 276, 295, 335
CviQI	GTAC	2 cut(s)	78, 421
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	3 cut(s)	96, 111, 141
DpnII	GATC	3 cut(s)	94, 109, 139
EaeI	YGGCCR	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	3 cut(s)	303, 310, 428
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FatI	CATG	3 cut(s)	299, 306, 424
Fnu4HI	GCNGC	2 cut(s)	12, 15
Fsp4HI	GCNGC	2 cut(s)	12, 15
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	2 cut(s)	12, 15
HaeIII	GGCC	2 cut(s)	89, 224
Hin1II	CATG	3 cut(s)	303, 310, 428
HinfI	GANTC	3 cut(s)	47, 117, 270
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	35, 98
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	22, 147, 187
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	303, 310, 428
Kzo9I	GATC	3 cut(s)	94, 109, 139
LpnPI	CCDG	4 cut(s)	20, 76, 103, 133
LweI	GCATC	3 cut(s)	201, 247, 336
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	3 cut(s)	96, 111, 141
MboI	GATC	3 cut(s)	94, 109, 139
MboII	GAAGA	4 cut(s)	50, 57, 104, 379
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	1 cut(s)	226
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	111, 264
MnlI	CCTC	1 cut(s)	37
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	224
MspA1I	CMGCKG	2 cut(s)	335, 441
MspR9I	CCNGG	1 cut(s)	91
Mva1269I	GAATGC	2 cut(s)	189, 318
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	320
NdeII	GATC	3 cut(s)	94, 109, 139
NlaIII	CATG	3 cut(s)	303, 310, 428
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	303
PctI	GAATGC	2 cut(s)	189, 318
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	13, 16
PleI	GAGTC	2 cut(s)	111, 264
PpsI	GAGTC	2 cut(s)	111, 264
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	79, 422
RsaNI	GTAC	2 cut(s)	78, 421
RseI	CAYNNNNRTG	1 cut(s)	311
SatI	GCNGC	2 cut(s)	12, 15
Sau3AI	GATC	3 cut(s)	94, 109, 139
SchI	GAGTC	2 cut(s)	111, 264
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	201, 247, 336
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	191
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	97, 115
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	3 cut(s)	142, 289, 379
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	11, 14
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	3 cut(s)	142, 289, 379
Van91I	CCANNNNNTGG	1 cut(s)	34
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.