Rmu_sc0007840.1_g000006

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007840.1
OG0017854
Physical Location & Seq
Forward (+)
36450 .. 36893
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007840.1_g000006.1.cds

Sequence Viewer

Length: 318 bp
atgatatttgctgctgccttgcaaatccaaactctggaagatgaggattcacaatggggtggttcttcagaaggtcgtacctataaggccagggatcaagagctgatggatcttcgacccaaagctcaatacttcactgatccgtgcagcttatccactgaacaaaagctgacatgcgccatgagaatgctcgcgtatggcatcacagctgatttttgtgatgattacctagatattgtgaagaccactgccattgagatttttgagcacttcacaaaagcaatatggaatgtgtaccatgagacttacctccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

105

Amino Acids

12.18

Weight (kDa)

4.64

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 313
AclWI GGATC 3 cut(s) 102, 117, 134
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 2 cut(s) 79, 296
AfiI CCNNNNNNNGG 1 cut(s) 34
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 5 cut(s) 103, 125, 150, 169, 209
AluI AGCT 5 cut(s) 103, 125, 150, 169, 209
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 3 cut(s) 102, 117, 134
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 3 cut(s) 11, 14, 147
AspLEI GCGC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 159
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 230
BisI GCNGC 3 cut(s) 12, 15, 148
BlsI GCNGC 3 cut(s) 13, 16, 149
Bme1390I CCNGG 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 94, 109, 139
BspACI CCGC 1 cut(s) 313
BspANI GGCC 1 cut(s) 89
BspFNI CGCG 1 cut(s) 194
BspPI GGATC 3 cut(s) 102, 117, 134
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 94, 109, 139
Bst2UI CCWGG 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 192
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 3 cut(s) 97, 112, 142
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 94, 109, 139
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 89
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 3 cut(s) 135, 156, 246
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 78, 295
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 3 cut(s) 174, 181, 299
CviJI RGCY 6 cut(s) 89, 103, 125, 150, 169, 209
CviKI_1 RGCY 6 cut(s) 89, 103, 125, 150, 169, 209
CviQI GTAC 2 cut(s) 78, 295
DpnI GATC 3 cut(s) 96, 111, 141
DpnII GATC 3 cut(s) 94, 109, 139
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 3 cut(s) 177, 184, 302
FaiI YATR 6 cut(s) 84, 175, 182, 198, 286, 300
FatI CATG 3 cut(s) 173, 180, 298
Fnu4HI GCNGC 3 cut(s) 12, 15, 148
Fsp4HI GCNGC 3 cut(s) 12, 15, 148
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 178
GluI GCNGC 3 cut(s) 12, 15, 148
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 1 cut(s) 179
Hin1II CATG 3 cut(s) 177, 184, 302
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 35, 98
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 22, 147
Hsp92II CATG 3 cut(s) 177, 184, 302
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 3 cut(s) 94, 109, 139
LpnPI CCDG 3 cut(s) 20, 76, 103
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 230
MalI GATC 3 cut(s) 96, 111, 141
MboI GATC 3 cut(s) 94, 109, 139
MboII GAAGA 4 cut(s) 50, 57, 104, 253
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 270
MnlI CCTC 1 cut(s) 37
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 2 cut(s) 209, 315
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 194
NdeII GATC 3 cut(s) 94, 109, 139
NlaIII CATG 3 cut(s) 177, 184, 302
NspI RCATGY 1 cut(s) 177
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 3 cut(s) 13, 16, 149
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 79, 296
RsaNI GTAC 2 cut(s) 78, 295
RseI CAYNNNNRTG 1 cut(s) 185
SatI GCNGC 3 cut(s) 12, 15, 148
Sau3AI GATC 3 cut(s) 94, 109, 139
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 270
SetI ASST 9 cut(s) 76, 83, 105, 127, 152, 171, 211, 231, 312
SfaNI GCATC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 185
SsiI CCGC 1 cut(s) 313
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 89
TaqI TCGA 1 cut(s) 115
TfiI GAWTC 1 cut(s) 47
TscAI CASTG 3 cut(s) 142, 163, 253
TseI GCWGC 3 cut(s) 11, 14, 147
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 3 cut(s) 142, 163, 253
Van91I CCANNNNNTGG 1 cut(s) 34
XceI RCATGY 1 cut(s) 177
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.