Rh5CG279200

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017854
Physical Location & Seq
Forward (+)
30431280 .. 30435819
4540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG279200.1

Sequence Viewer

Length: 492 bp
ATGTTCAACCATCTTCCATCTTCAACTTCACTTTCAATACTTATTATTTCTTTCTTTAGCCATGACTCATTTTTACATGATATGATGATGAAAGACGAATCCTCTGATGACGAGGATGAAGCAATTATGCTTGCTCTTGTTGAACAATCAATGAAGGAAGACTACCCTCGCCGCAGACGCGGTTATGCTGAAGGTCACAGTACTATCGCGCGTGGTAGAATCGATGGCCATAATAGACTTAATGCAGATTACTTTGTTGATCAGCCTATCTTTAAGAGTCATATATTTAGACGAAGATTTGATATGAAACGACCTCTTTTTTTTTTGCGAATTCATGCCGTAGTGGAAAATCATGATTCCTATTTTGTTCAAAAAAGGAATGCCGTTGGAGTTCTAGGTTTGTCATCCCTCCAAAAGATGACAGCTGCACTAAGAATGCTTGCTTATGGCGTGTCGGCAGATCAAGTTGATGAATACCTACGAATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

163

Amino Acids

18.91

Weight (kDa)

6.71

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 180, 209, 211
AciI CCGC 2 cut(s) 172, 180
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 5 cut(s) 7, 24, 36, 143, 371
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 330
AspLEI GCGC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 412
BccI CCATC 3 cut(s) 18, 25, 218
BceAI ACGGC 2 cut(s) 323, 368
BclI TGATCA 1 cut(s) 259
BfaI CTAG 1 cut(s) 395
BisI GCNGC 2 cut(s) 172, 426
BlsI GCNGC 2 cut(s) 173, 427
BmcAI AGTACT 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 222
BseGI GGATG 2 cut(s) 121, 404
BseXI GCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 3 cut(s) 180, 209, 211
BshFI GGCC 1 cut(s) 228
BshVI ATCGAT 1 cut(s) 222
BsmI GAATGC 2 cut(s) 385, 441
BsnI GGCC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 259, 460
BspACI CCGC 2 cut(s) 172, 180
BspANI GGCC 1 cut(s) 228
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 3 cut(s) 180, 209, 211
BspHI TCATGA 1 cut(s) 352
BssMI GATC 2 cut(s) 259, 460
Bst4CI ACNGT 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 132, 441
BstDEI CTNAG 1 cut(s) 431
BstF5I GGATG 2 cut(s) 121, 404
BstFNI CGCG 3 cut(s) 180, 209, 211
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 262, 463
BstMBI GATC 2 cut(s) 259, 460
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstUI CGCG 3 cut(s) 180, 209, 211
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 1 cut(s) 228
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 2 cut(s) 121, 404
Cac8I GCNNGC 2 cut(s) 132, 441
CciI TCATGA 1 cut(s) 352
CfoI GCGC 1 cut(s) 211
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 201
CviAII CATG 4 cut(s) 62, 77, 335, 353
CviJI RGCY 5 cut(s) 60, 228, 265, 425, 489
CviKI_1 RGCY 5 cut(s) 60, 228, 265, 425, 489
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 431
DpnI GATC 2 cut(s) 261, 462
DpnII GATC 2 cut(s) 259, 460
EaeI YGGCCR 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 330
FaeI CATG 4 cut(s) 65, 80, 338, 356
FatI CATG 4 cut(s) 61, 76, 334, 352
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 172, 426
FokI GGATG 2 cut(s) 128, 391
Fsp4HI GCNGC 2 cut(s) 172, 426
FspBI CTAG 1 cut(s) 395
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 172, 426
HaeIII GGCC 1 cut(s) 228
HgaI GACGC 1 cut(s) 186
HhaI GCGC 1 cut(s) 211
Hin1II CATG 4 cut(s) 65, 80, 338, 356
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 5 cut(s) 65, 98, 219, 277, 356
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 353
HpyAV CCTTC 2 cut(s) 148, 185
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 245, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 431
Hsp92II CATG 4 cut(s) 65, 80, 338, 356
HspAI GCGC 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 460
Lsp1109I GCAGC 1 cut(s) 412
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 261, 462
MboI GATC 2 cut(s) 259, 460
MboII GAAGA 4 cut(s) 5, 12, 170, 306
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 3 cut(s) 123, 330, 483
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 2 cut(s) 59, 286
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 5 cut(s) 106, 112, 177, 324, 419
Mox20I TGGCCA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 228
MseI TTAA 2 cut(s) 240, 273
Msp20I TGGCCA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 425
Mva1269I GAATGC 2 cut(s) 385, 441
MvnI CGCG 3 cut(s) 180, 209, 211
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 2 cut(s) 259, 460
NlaIII CATG 4 cut(s) 65, 80, 338, 356
NmuCI GTSAC 1 cut(s) 194
PagI TCATGA 1 cut(s) 352
PctI GAATGC 2 cut(s) 385, 441
PfeI GAWTC 3 cut(s) 98, 219, 356
PkrI GCNGC 2 cut(s) 173, 427
PleI GAGTC 2 cut(s) 59, 285
PpsI GAGTC 2 cut(s) 59, 285
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 240, 273
SatI GCNGC 2 cut(s) 172, 426
Sau3AI GATC 2 cut(s) 259, 460
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 2 cut(s) 59, 286
SetI ASST 5 cut(s) 196, 316, 400, 427, 480
Sse9I AATT 3 cut(s) 123, 330, 483
SsiI CCGC 2 cut(s) 172, 180
SspMI CTAG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 222
TasI AATT 3 cut(s) 123, 330, 483
TatI WGTACW 1 cut(s) 200
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 3 cut(s) 98, 219, 356
Tru1I TTAA 2 cut(s) 240, 273
Tru9I TTAA 2 cut(s) 240, 273
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 6 cut(s) 104, 132, 167, 320, 323, 486
XapI RAATTY 1 cut(s) 330
XspI CTAG 1 cut(s) 395
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.