Rmu_sc0014846.1_g000005

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014846.1
OG0017854
Physical Location & Seq
Forward (+)
18164 .. 20136
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014846.1_g000005.1.cds

Sequence Viewer

Length: 678 bp
atgaattctcttcaaatcaagaattataccaggagaaaccatagtataggggttgctctctcgtctctctctcaagaagcagcatccactctttttcgtgctccgtctgacggcgagtctccaaggcgaagttgtcggacgggtcttcctagtctcaacaacaatctgctatccctgcagggtggaaggtggaggaggtggtttcgcggggagtggctgggccatcgtggtcctcatgaatctaattcgctgaatctattcggttggctagaggagggcagctgctcgccggtcgtctggtggttatctgaattggatcgcgcgcgggaaagatcaagaagaagccgtcgacgagccttgatgatgtcttccgctgccttgcaaatccaaactctggaagttgaggattcacaatggggtggttcttcagaaggtcgtacctataaggccagggatcgagagctgatggatcttcgactcaaagctcaatacttcactgatccgtgtagcttatccactgaacaaaaacttacatgcgccatgagaatgctcgcgtatggcatcacagctgatttctgcgatgattacctagatattgcgaagaccactaccattgagatttttgagcacttcacaaaagcaatctggaatgtgtaccatgagacttacctccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

225

Amino Acids

25.99

Weight (kDa)

9.06

Isoelectric Point (pI)

69.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AccI GTMKAC 1 cut(s) 349
AccII CGCG 5 cut(s) 207, 321, 323, 325, 554
AciI CCGC 4 cut(s) 207, 325, 372, 673
AclWI GGATC 4 cut(s) 324, 462, 477, 494
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 2 cut(s) 439, 656
AfiI CCNNNNNNNGG 2 cut(s) 110, 394
AgsI TTSAA 1 cut(s) 14
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 2 cut(s) 29, 449
AluBI AGCT 5 cut(s) 282, 463, 485, 510, 569
AluI AGCT 5 cut(s) 282, 463, 485, 510, 569
Alw21I GWGCWC 2 cut(s) 103, 630
Alw26I GTCTC 4 cut(s) 69, 123, 158, 656
AlwI GGATC 4 cut(s) 324, 462, 477, 494
AoxI GGCC 2 cut(s) 220, 447
ApeKI GCWGC 4 cut(s) 80, 279, 282, 374
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 3 cut(s) 323, 325, 539
AspS9I GGNCC 2 cut(s) 220, 230
AvaII GGWCC 1 cut(s) 230
BbsI GAAGAC 3 cut(s) 137, 360, 608
Bbv12I GWGCWC 2 cut(s) 103, 630
BbvI GCAGC 4 cut(s) 92, 269, 291, 361
BccI CCATC 2 cut(s) 231, 460
BceAI ACGGC 2 cut(s) 127, 330
BciT130I CCWGG 2 cut(s) 31, 451
BcoDI GTCTC 4 cut(s) 69, 123, 158, 656
BfaI CTAG 3 cut(s) 150, 269, 590
BfmI CTRYAG 1 cut(s) 176
BisI GCNGC 4 cut(s) 81, 280, 283, 375
BlsI GCNGC 4 cut(s) 82, 281, 284, 376
Bme1390I CCNGG 2 cut(s) 31, 451
Bme18I GGWCC 1 cut(s) 230
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 220, 230
BmrFI CCNGG 2 cut(s) 31, 451
BmsI GCATC 2 cut(s) 92, 570
BpiI GAAGAC 3 cut(s) 137, 360, 608
BpuEI CTTGAG 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 122, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 394
Bse118I RCCGGY 1 cut(s) 289
BseBI CCWGG 2 cut(s) 31, 451
BseDI CCNNGG 2 cut(s) 122, 450
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 110, 394
BsePI GCGCGC 1 cut(s) 321
BseRI GAGGAG 2 cut(s) 208, 287
BseXI GCAGC 4 cut(s) 92, 269, 291, 361
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 5 cut(s) 207, 321, 323, 325, 554
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 222, 449
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 103, 630
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 2 cut(s) 110, 394
BsmAI GTCTC 4 cut(s) 69, 123, 158, 656
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 2 cut(s) 222, 449
Bsp1286I GDGCHC 2 cut(s) 103, 630
Bsp143I GATC 5 cut(s) 316, 332, 454, 469, 499
BspACI CCGC 4 cut(s) 207, 325, 372, 673
BspANI GGCC 2 cut(s) 222, 449
BspFNI CGCG 5 cut(s) 207, 321, 323, 325, 554
BspHI TCATGA 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 180
BspPI GGATC 4 cut(s) 324, 462, 477, 494
BsrFI RCCGGY 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 122, 450
BssHII GCGCGC 1 cut(s) 321
BssMI GATC 5 cut(s) 316, 332, 454, 469, 499
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 31, 451
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 287, 323, 552
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 5 cut(s) 207, 321, 323, 325, 554
BstHHI GCGC 3 cut(s) 323, 325, 539
BstKTI GATC 5 cut(s) 319, 335, 457, 472, 502
BstMAI GTCTC 4 cut(s) 69, 123, 158, 656
BstMBI GATC 5 cut(s) 316, 332, 454, 469, 499
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 2 cut(s) 31, 451
BstNSI RCATGY 1 cut(s) 537
BstSCI CCNGG 2 cut(s) 29, 449
BstSFI CTRYAG 1 cut(s) 176
BstUI CGCG 5 cut(s) 207, 321, 323, 325, 554
BstV1I GCAGC 4 cut(s) 92, 269, 291, 361
BstV2I GAAGAC 3 cut(s) 137, 360, 608
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 2 cut(s) 222, 449
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 495, 516
Cac8I GCNNGC 3 cut(s) 287, 323, 552
CciI TCATGA 1 cut(s) 235
CfoI GCGC 3 cut(s) 323, 325, 539
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 220, 230
Csp6I GTAC 2 cut(s) 438, 655
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 4 cut(s) 236, 534, 541, 659
CviQI GTAC 2 cut(s) 438, 655
DpnI GATC 5 cut(s) 318, 334, 456, 471, 501
DpnII GATC 5 cut(s) 316, 332, 454, 469, 499
DriI GACNNNNNGTC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 29, 449
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 239, 537, 544, 662
FaiI YATR 9 cut(s) 27, 42, 47, 237, 444, 535, 542, 558, 660
FatI CATG 4 cut(s) 235, 533, 540, 658
FauI CCCGC 2 cut(s) 200, 318
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 4 cut(s) 81, 280, 283, 375
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 4 cut(s) 81, 280, 283, 375
FspBI CTAG 3 cut(s) 150, 269, 590
GlaI GCGC 3 cut(s) 322, 324, 538
GluI GCNGC 4 cut(s) 81, 280, 283, 375
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 2 cut(s) 222, 449
HapII CCGG 1 cut(s) 290
HhaI GCGC 3 cut(s) 323, 325, 539
Hin1II CATG 4 cut(s) 239, 537, 544, 662
Hin6I GCGC 3 cut(s) 321, 323, 537
HinP1I GCGC 3 cut(s) 321, 323, 537
HincII GTYRAC 1 cut(s) 350
HindII GTYRAC 1 cut(s) 350
HinfI GANTC 5 cut(s) 116, 239, 253, 407, 477
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 350, 655
Hpy188I TCNGA 4 cut(s) 109, 138, 310, 430
Hpy188III TCNNGA 7 cut(s) 19, 74, 236, 336, 395, 458, 646
Hpy8I GTNNAC 2 cut(s) 350, 655
Hpy99I CGWCG 2 cut(s) 351, 354
HpyAV CCTTC 2 cut(s) 180, 425
HpyCH4V TGCA 2 cut(s) 178, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
Hsp92II CATG 4 cut(s) 239, 537, 544, 662
HspAI GCGC 3 cut(s) 321, 323, 537
Kzo9I GATC 5 cut(s) 316, 332, 454, 469, 499
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 4 cut(s) 92, 269, 291, 361
LweI GCATC 2 cut(s) 92, 570
MaeI CTAG 3 cut(s) 150, 269, 590
MalI GATC 5 cut(s) 318, 334, 456, 471, 501
MauBI CGCGCGCG 1 cut(s) 321
MboI GATC 5 cut(s) 316, 332, 454, 469, 499
MboII GAAGA 6 cut(s) 137, 351, 360, 417, 464, 613
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 103, 630
MluCI AATT 4 cut(s) 4, 22, 244, 311
MlyI GAGTC 2 cut(s) 125, 471
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 6 cut(s) 186, 189, 243, 265, 268, 397
MroXI GAANNNNTTC 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 4 cut(s) 282, 374, 569, 675
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 31, 451
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 2 cut(s) 31, 451
MvnI CGCG 5 cut(s) 207, 321, 323, 325, 554
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 5 cut(s) 316, 332, 454, 469, 499
NlaIII CATG 4 cut(s) 239, 537, 544, 662
NspI RCATGY 1 cut(s) 537
PagI TCATGA 1 cut(s) 235
PauI GCGCGC 1 cut(s) 321
PctI GAATGC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 239, 253, 407
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 4 cut(s) 82, 281, 284, 376
PleI GAGTC 2 cut(s) 124, 471
PpsI GAGTC 2 cut(s) 124, 471
Psp6I CCWGG 2 cut(s) 29, 449
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 2 cut(s) 29, 449
PspPI GGNCC 2 cut(s) 220, 230
PstI CTGCAG 1 cut(s) 180
PsuI RGATCY 1 cut(s) 469
PteI GCGCGC 1 cut(s) 321
PvuII CAGCTG 2 cut(s) 282, 569
RsaI GTAC 2 cut(s) 439, 656
RsaNI GTAC 2 cut(s) 438, 655
RseI CAYNNNNRTG 1 cut(s) 545
SalI GTCGAC 1 cut(s) 348
SatI GCNGC 4 cut(s) 81, 280, 283, 375
Sau3AI GATC 5 cut(s) 316, 332, 454, 469, 499
Sau96I GGNCC 2 cut(s) 220, 230
SbfI CCTGCAGG 1 cut(s) 180
SchI GAGTC 2 cut(s) 125, 471
ScrFI CCNGG 2 cut(s) 31, 451
SdaI CCTGCAGG 1 cut(s) 180
SduI GDGCHC 2 cut(s) 103, 630
SfaNI GCATC 2 cut(s) 92, 570
SfcI CTRYAG 1 cut(s) 176
SgrDI CGTCGACG 1 cut(s) 348
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse8387I CCTGCAGG 1 cut(s) 180
Sse9I AATT 4 cut(s) 4, 22, 244, 311
SsiI CCGC 4 cut(s) 207, 325, 372, 673
SspMI CTAG 3 cut(s) 150, 269, 590
StyD4I CCNGG 2 cut(s) 29, 449
StyI CCWWGG 1 cut(s) 122
TaqI TCGA 3 cut(s) 349, 457, 475
TasI AATT 4 cut(s) 4, 22, 244, 311
TfiI GAWTC 3 cut(s) 239, 253, 407
TscAI CASTG 2 cut(s) 502, 523
TseI GCWGC 4 cut(s) 80, 279, 282, 374
TspDTI ATGAA 2 cut(s) 17, 252
TspGWI ACGGA 2 cut(s) 93, 492
TspRI CASTG 2 cut(s) 502, 523
Van91I CCANNNNNTGG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 3 cut(s) 150, 269, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.