Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000395.1

Orthogroup ID

OG0017855

Physical Location & Seq

Genomic Coordinates Reverse (-)

70204 .. 70806

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgtatgagattaaaacttctaatgtggatgcacaacaagagcttagaagaatggaagagggcatgaataagaagtttgagatgttattgaagcaacaagctatgggaggtcgtgagcatgtcaatgaggtaaatcaagggccacttgtgtgtttgatatgtgaaggagtcaaccatgataccctttcttgtccacatagggattgtttcccgaagattattgaagagtgcaagcaaatggggtaccaaaggcccaagaatgatccctactccaacacatataatcccggttggaggaaccaccctaacttttcatggggtggcaatcaaggtggaaatcaaggaggtgcacaaggagtcggttatggtgggggtaattatggaggggctagtggaagccaagggtttcaaggcaataagggtgtagttggtggtaatgcttatcctaagccaccttatcaagcaagaccccccttccaagatcctaatcctcaagctcaagcacctattcctctacctcaaggggaagcatcaaagtctaacttagaggagatgcttgccaaggtgctagcaaatcaaaatgagatcattcaaagtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve

Protein Analysis

200

Amino Acids

21.88

Weight (kDa)

6.42

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017855)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000395.1_g000018 Rmu_sc0000920.1_g000016
rosa_samantha	Rh2BG339000 Rh3AG309300 Rh3BG345400 Rh3BG345500 Rh3CG342600 Rh4AG082000 Rh4AG111200 Rh4CG089500 Rh6AG167200
rosa_wichuraiana	Rw4G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	257, 476
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	91, 224, 410, 593
AleI	CACNNNNGTG	1 cut(s)	148
AluBI	AGCT	3 cut(s)	43, 101, 497
AluI	AGCT	3 cut(s)	43, 101, 497
Alw21I	GWGCWC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	257, 476
AoxI	GGCC	2 cut(s)	140, 251
ApaLI	GTGCAC	1 cut(s)	348
Asp718I	GGTACC	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	140, 252
AsuC2I	CCSGG	1 cut(s)	288
AsuNHI	GCTAGC	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	288
BfaI	CTAG	2 cut(s)	390, 569
Bme1390I	CCNGG	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	140, 252
BmiI	GGNNCC	2 cut(s)	245, 299
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	19, 539, 543
BmtI	GCTAGC	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	3 cut(s)	477, 483, 504
BpuMI	CCSGG	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	400, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	400, 561
BseGI	GGATG	1 cut(s)	34
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	563
BseSI	GKGCMC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	142, 253
BshNI	GGYRCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	294
BsnI	GGCC	2 cut(s)	142, 253
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	3 cut(s)	262, 481, 585
BspANI	GGCC	2 cut(s)	142, 253
BspLI	GGNNCC	2 cut(s)	245, 299
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	2 cut(s)	257, 476
BspT107I	GGYRCC	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	400, 561
BssMI	GATC	3 cut(s)	262, 481, 585
BssT1I	CCWWGG	2 cut(s)	400, 561
Bst6I	CTCTTC	2 cut(s)	51, 219
BstC8I	GCNNGC	3 cut(s)	233, 558, 570
BstDEI	CTNAG	3 cut(s)	44, 447, 544
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	265, 484, 588
BstMBI	GATC	3 cut(s)	262, 481, 585
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	2 cut(s)	142, 253
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	3 cut(s)	233, 558, 570
Cfr13I	GGNCC	2 cut(s)	140, 252
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	4 cut(s)	64, 119, 176, 315
CviJI	RGCY	8 cut(s)	43, 101, 142, 253, 389, 399, 451, 497
CviKI_1	RGCY	8 cut(s)	43, 101, 142, 253, 389, 399, 451, 497
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	3 cut(s)	44, 447, 544
DpnI	GATC	3 cut(s)	264, 483, 587
DpnII	GATC	3 cut(s)	262, 481, 585
Eam1104I	CTCTTC	2 cut(s)	51, 219
EarI	CTCTTC	2 cut(s)	51, 219
Eco130I	CCWWGG	2 cut(s)	400, 561
EcoT14I	CCWWGG	2 cut(s)	400, 561
ErhI	CCWWGG	2 cut(s)	400, 561
FaeI	CATG	4 cut(s)	67, 122, 179, 318
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 527, 559
FatI	CATG	4 cut(s)	63, 118, 175, 314
FokI	GGATG	1 cut(s)	41
FspBI	CTAG	2 cut(s)	390, 569
HaeIII	GGCC	2 cut(s)	142, 253
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	4 cut(s)	67, 122, 179, 318
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	168, 357
HpaII	CCGG	1 cut(s)	288
Hpy166II	GTNNAC	3 cut(s)	172, 194, 350
Hpy188III	TCNNGA	2 cut(s)	113, 211
Hpy8I	GTNNAC	3 cut(s)	172, 194, 350
HpyAV	CCTTC	2 cut(s)	158, 484
HpyCH4V	TGCA	3 cut(s)	32, 231, 350
HpyF3I	CTNAG	3 cut(s)	44, 447, 544
Hsp92II	CATG	4 cut(s)	67, 122, 179, 318
KpnI	GGTACC	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	262, 481, 585
LpnPI	CCDG	1 cut(s)	301
LweI	GCATC	3 cut(s)	19, 539, 543
MaeI	CTAG	2 cut(s)	390, 569
MalI	GATC	3 cut(s)	264, 483, 587
MboI	GATC	3 cut(s)	262, 481, 585
MboII	GAAGA	4 cut(s)	60, 68, 226, 236
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	1 cut(s)	376
MlyI	GAGTC	2 cut(s)	177, 366
MmeI	TCCRAC	2 cut(s)	272, 297
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	2 cut(s)	123, 148
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	288
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	262, 481, 585
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	4 cut(s)	67, 122, 179, 318
NlaIV	GGNNCC	2 cut(s)	245, 299
NspI	RCATGY	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	148
PleI	GAGTC	2 cut(s)	176, 365
PpsI	GAGTC	2 cut(s)	176, 365
PspN4I	GGNNCC	2 cut(s)	245, 299
PspPI	GGNCC	2 cut(s)	140, 252
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	2 cut(s)	123, 148
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	262, 481, 585
Sau96I	GGNCC	2 cut(s)	140, 252
SchI	GAGTC	2 cut(s)	177, 366
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	3 cut(s)	19, 539, 543
SmiMI	CAYNNNNRTG	2 cut(s)	123, 148
SmlI	CTYRAG	3 cut(s)	492, 498, 519
SmoI	CTYRAG	3 cut(s)	492, 498, 519
Sse9I	AATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	390, 569
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	400, 561
TasI	AATT	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	80, 303
VneI	GTGCAC	1 cut(s)	348
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	2 cut(s)	390, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.