Rh4AG111200

Pleiotropic drug resistance protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017855
Physical Location & Seq
Reverse (-)
24101200 .. 24103563
2364 bp
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UTR
Exon/CDS
Intron
Rh4AG111200.1

Sequence Viewer

Length: 576 bp
ATGAGACTCCAAAAAGTCTATTCTATTGAAGTAGAGGACAAGATTGATGACTTGGTGGAGCACACTTTTCATGAGACTTCATCAAGTGATGCCTTAGAAGCGGCATTAGCACACTTTGGGATGGATTTTTATGAAGAAAGTACTATAAAAGCGGTGGAGCAACTTGATTCTTATCTTTTTATAGGTAGACCAATACTTGAGGATGGTTATTACACAAGGCATGAGGCCAATGAGGTGCATACCTCTAACGCTTATCTTTCCATTGATTCCACTCCTCCGATTTGCAATGCCATCAGGTTTTTCACCACAATACTCATCGGCGTACTTTTTGGTGTCATCTTCTGGAAGAAAGGAAACGTGTTAGGGAAACAACAAGATATTGTTAACCTTCTGGGAGCTACCTATTCTGTTGTTGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGGGTTTGATGTCATCTTCAAAATCTAGTGAAGATGGAGGAAATGAAGTGTTCTGA

Protein Analysis

191

Amino Acids

21.21

Weight (kDa)

4.73

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 95 - 177 1.4e-13 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 187
AciI CCGC 3 cut(s) 101, 152, 416
AfaI GTAC 2 cut(s) 142, 324
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 2 cut(s) 29, 540
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 68
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 482
Asp700I GAANNNNTTC 2 cut(s) 424, 493
AsuHPI GGTGA 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 494
BccI CCATC 4 cut(s) 115, 197, 299, 548
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 546
BisI GCNGC 2 cut(s) 102, 483
BlsI GCNGC 2 cut(s) 103, 484
BmcAI AGTACT 1 cut(s) 142
BmsI GCATC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 171
BseGI GGATG 2 cut(s) 126, 208
BseJI GATNNNNATC 1 cut(s) 171
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 494
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 68
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 63
BspACI CCGC 3 cut(s) 101, 152, 416
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 532
BspHI TCATGA 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 94, 519
BstF5I GGATG 2 cut(s) 126, 208
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 3 cut(s) 98, 107, 422
BstV1I GCAGC 1 cut(s) 494
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 126, 208
CciI TCATGA 1 cut(s) 70
Csp6I GTAC 2 cut(s) 141, 323
CviAII CATG 2 cut(s) 71, 221
CviJI RGCY 2 cut(s) 227, 398
CviKI_1 RGCY 2 cut(s) 227, 398
CviQI GTAC 2 cut(s) 141, 323
DdeI CTNAG 2 cut(s) 94, 519
EcoT22I ATGCAT 1 cut(s) 514
FaeI CATG 2 cut(s) 74, 224
FaiI YATR 7 cut(s) 72, 132, 146, 182, 222, 240, 510
FatI CATG 2 cut(s) 70, 220
FauI CCCGC 1 cut(s) 409
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 102, 483
FokI GGATG 2 cut(s) 133, 215
Fsp4HI GCNGC 2 cut(s) 102, 483
FspBI CTAG 1 cut(s) 546
GluI GCNGC 2 cut(s) 102, 483
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 2 cut(s) 74, 224
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 3 cut(s) 6, 167, 266
HpaI GTTAAC 1 cut(s) 385
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 188, 385
Hpy188I TCNGA 3 cut(s) 279, 499, 575
Hpy188III TCNNGA 2 cut(s) 71, 343
Hpy8I GTNNAC 2 cut(s) 188, 385
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 4 cut(s) 238, 285, 436, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 107, 422
HpyF3I CTNAG 2 cut(s) 94, 519
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 2 cut(s) 74, 224
KspAI GTTAAC 1 cut(s) 385
LmnI GCTCC 3 cut(s) 58, 157, 395
LpnPI CCDG 5 cut(s) 280, 328, 377, 471, 506
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 546
MaeII ACGT 1 cut(s) 357
MboII GAAGA 5 cut(s) 146, 331, 358, 528, 563
MhlI GDGCHC 1 cut(s) 63
MnlI CCTC 7 cut(s) 28, 193, 217, 226, 253, 285, 551
Mph1103I ATGCAT 1 cut(s) 514
MroXI GAANNNNTTC 2 cut(s) 424, 493
MseI TTAA 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 98, 107, 422
NlaIII CATG 2 cut(s) 74, 224
NsiI ATGCAT 1 cut(s) 514
PagI TCATGA 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 424, 493
PfeI GAWTC 2 cut(s) 167, 266
PkrI GCNGC 2 cut(s) 103, 484
RsaI GTAC 2 cut(s) 142, 324
RsaNI GTAC 2 cut(s) 141, 323
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 102, 483
ScaI AGTACT 1 cut(s) 142
SduI GDGCHC 1 cut(s) 63
SetI ASST 8 cut(s) 187, 237, 245, 299, 360, 390, 400, 404
SfaNI GCATC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SsiI CCGC 3 cut(s) 101, 152, 416
SspMI CTAG 1 cut(s) 546
TaaI ACNGT 1 cut(s) 463
TaiI ACGT 1 cut(s) 360
TatI WGTACW 1 cut(s) 140
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 167, 266
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseI GCWGC 1 cut(s) 482
TspDTI ATGAA 3 cut(s) 59, 69, 147
XmiI GTMKAC 1 cut(s) 187
XmnI GAANNNNTTC 2 cut(s) 424, 493
XspI CTAG 1 cut(s) 546
ZrmI AGTACT 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.