Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000920.1

Orthogroup ID

OG0017855

Physical Location & Seq

Genomic Coordinates Forward (+)

79691 .. 80397

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000920.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgggagcggagaaagcagaggcatcgttggatttgctgatggccaggttcaacagtcagatctcagagttccaagagctcgttattgcgaaatacagcatcaccgatttgtcggccaccgacgccgccatgaaggacatggagcttcaggtccaggccatcaaagactgggagggtagagtcagggtctggaatcttaaggatgtatttgaacctgggtgcggtctcgaaggcaggggcctgaggggtgatgaggatgcagctccttactatgaatctacaagcacctctcctaccatgtttttgatggttgatgttgggaataagttgatttggagcgggcataaggatggcaagattaggtcttggaagatggatcagcctttggatgcttctactccttttaaggaagggctttcctcagggtcggccctgagggctgcagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

149

Amino Acids

16.4

Weight (kDa)

4.82

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017855)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000395.1_g000018 Rmu_sc0000920.1_g000016
rosa_samantha	Rh2BG339000 Rh3AG309300 Rh3BG345400 Rh3BG345500 Rh3CG342600 Rh4AG082000 Rh4AG111200 Rh4CG089500 Rh6AG167200
rosa_wichuraiana	Rw4G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	8, 339
AciI	CCGC	4 cut(s)	8, 126, 222, 339
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	2 cut(s)	42, 114
AcuI	CTGAAG	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	52, 212
AjnI	CCWGG	3 cut(s)	44, 153, 214
AluBI	AGCT	3 cut(s)	79, 145, 263
AluI	AGCT	3 cut(s)	79, 145, 263
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	189
AoxI	GGCC	5 cut(s)	42, 114, 156, 238, 429
ApeKI	GCWGC	3 cut(s)	260, 440, 443
AspS9I	GGNCC	3 cut(s)	151, 238, 430
AsuHPI	GGTGA	2 cut(s)	94, 260
AvaII	GGWCC	1 cut(s)	151
AxyI	CCTNAGG	3 cut(s)	242, 421, 434
BalI	TGGCCA	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	272, 427
BccI	CCATC	5 cut(s)	34, 167, 301, 344, 367
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	3 cut(s)	46, 155, 216
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	437
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	4 cut(s)	126, 261, 441, 444
BlsI	GCNGC	4 cut(s)	127, 262, 442, 445
Bme1390I	CCNGG	3 cut(s)	46, 155, 216
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	151, 238, 430
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	3 cut(s)	46, 155, 216
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	4 cut(s)	32, 108, 247, 379
BmuI	ACTGGG	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	173
Bse21I	CCTNAGG	3 cut(s)	242, 421, 434
BseBI	CCWGG	3 cut(s)	46, 155, 216
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	4 cut(s)	208, 262, 355, 394
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	4 cut(s)	78, 233, 425, 435
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	272, 427
BshFI	GGCC	5 cut(s)	44, 116, 158, 240, 431
BsiHKAI	GWGCWC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	5 cut(s)	44, 116, 158, 240, 431
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	60, 376
BspACI	CCGC	4 cut(s)	8, 126, 222, 339
BspANI	GGCC	5 cut(s)	44, 116, 158, 240, 431
BspCNI	CTCAG	4 cut(s)	77, 234, 426, 434
BspLI	GGNNCC	1 cut(s)	239
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	230
BsrBI	CCGCTC	2 cut(s)	8, 339
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	60, 376
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	46, 155, 216
Bst4CI	ACNGT	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	123
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	4 cut(s)	64, 242, 421, 434
BstF5I	GGATG	4 cut(s)	208, 262, 355, 394
BstKTI	GATC	2 cut(s)	63, 379
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	60, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 122, 437
BstNI	CCWGG	3 cut(s)	46, 155, 216
BstSCI	CCNGG	3 cut(s)	44, 153, 214
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	272, 427
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
Bsu36I	CCTNAGG	3 cut(s)	242, 421, 434
BsuRI	GGCC	5 cut(s)	44, 116, 158, 240, 431
BtsCI	GGATG	4 cut(s)	208, 262, 355, 394
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	151, 238, 430
CseI	GACGC	1 cut(s)	131
CviAII	CATG	3 cut(s)	130, 139, 298
DdeI	CTNAG	4 cut(s)	64, 242, 421, 434
DpnI	GATC	2 cut(s)	62, 378
DpnII	GATC	2 cut(s)	60, 376
EaeI	YGGCCR	2 cut(s)	42, 114
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	131
Eco81I	CCTNAGG	3 cut(s)	242, 421, 434
EcoICRI	GAGCTC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	3 cut(s)	44, 153, 214
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	3 cut(s)	133, 142, 301
FaiI	YATR	5 cut(s)	131, 140, 273, 299, 345
FatI	CATG	3 cut(s)	129, 138, 297
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	4 cut(s)	126, 261, 441, 444
FokI	GGATG	4 cut(s)	215, 269, 362, 401
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	126, 261, 441, 444
GluI	GCNGC	4 cut(s)	126, 261, 441, 444
HaeIII	GGCC	5 cut(s)	44, 116, 158, 240, 431
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	133, 142, 301
HinfI	GANTC	3 cut(s)	180, 193, 275
HphI	GGTGA	2 cut(s)	94, 260
Hpy188I	TCNGA	2 cut(s)	60, 67
Hpy188III	TCNNGA	2 cut(s)	190, 227
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	127, 224, 404
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	260, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 122, 437
HpyF3I	CTNAG	4 cut(s)	64, 242, 421, 434
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	133, 142, 301
Kzo9I	GATC	2 cut(s)	60, 376
LmnI	GCTCC	4 cut(s)	5, 142, 268, 336
Lsp1109I	GCAGC	2 cut(s)	272, 427
LweI	GCATC	4 cut(s)	32, 108, 247, 379
MalI	GATC	2 cut(s)	62, 378
MbiI	CCGCTC	2 cut(s)	8, 339
MboI	GATC	2 cut(s)	60, 376
MboII	GAAGA	1 cut(s)	382
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	7 cut(s)	13, 166, 237, 247, 298, 429, 430
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	2 cut(s)	198, 405
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	46, 155, 216
MvaI	CCWGG	3 cut(s)	46, 155, 216
MwoI	GCNNNNNNNGC	3 cut(s)	14, 122, 437
NdeII	GATC	2 cut(s)	60, 376
NlaIII	CATG	3 cut(s)	133, 142, 301
NlaIV	GGNNCC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	193, 275
PkrI	GCNGC	4 cut(s)	127, 262, 442, 445
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	3 cut(s)	44, 153, 214
PspGI	CCWGG	3 cut(s)	44, 153, 214
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	3 cut(s)	151, 238, 430
PstI	CTGCAG	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	198, 405
SatI	GCNGC	4 cut(s)	126, 261, 441, 444
Sau3AI	GATC	2 cut(s)	60, 376
Sau96I	GGNCC	3 cut(s)	151, 238, 430
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	3 cut(s)	46, 155, 216
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	8 cut(s)	50, 81, 147, 153, 217, 265, 290, 365
SfaNI	GCATC	4 cut(s)	32, 108, 247, 379
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	4 cut(s)	8, 126, 222, 339
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	44, 153, 214
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	228
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	193, 275
Tru1I	TTAA	2 cut(s)	198, 405
Tru9I	TTAA	2 cut(s)	198, 405
TseI	GCWGC	3 cut(s)	260, 440, 443
TspDTI	ATGAA	2 cut(s)	146, 288
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	2 cut(s)	136, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.