Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017855

Physical Location & Seq

Genomic Coordinates Reverse (-)

26726084 .. 26741273

Gene Structure 15190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG167200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTATGAAATCAAAGCATCAAGCTTGGATGTACATCATGAGTTCAAGAGGTTGGAAGATAGTCTTAATAAGAAGTTTGATATACTTTTGAAGCAAGGCAAGCAAGGGGTCCGTGAGCAAGTCAATGAGGTTCAAGGGTCACAAGAACCTTTGTTGACTCCCAAAGTGCCAAGAGTACCTCCCGGGTTTGATAAGAAGTCCAAAGGCGTGAAGGATGATTTGGGGGATGATGGAGTGATTTTGGGAACCATTGCGTGCACCGAGACACAACTCTGGGCTGGTCAGGAGGGTGGAGTCAGGGTCTGGAATCTTAAGGATGTATTTGAACCTGGGTGCGGTCTCGGAGGTAGGGTCCTGAGGGGTGATGAGGGTGCAGCGCCTTACTATGAATCTGCAAGCACCTCTCCTGCCATGTTTTTGATGGTTGATGTTGGGAATAAGTTGATTTGGAGCGGGCATAAGGATGGCAAGATTAGGTCTTGGAAGATGGATCAGCCTTTGGATGCTTCTACTCCTTTGGATGCTTCTACTCCTTTTAAGGAGTTCTTGCCATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

186

Amino Acids

20.56

Weight (kDa)

5.67

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IP5PC_F	PF23754	78 - 185	8.7e-44	IP5P C-F beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017855)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000395.1_g000018 Rmu_sc0000920.1_g000016
rosa_samantha	Rh2BG339000 Rh3AG309300 Rh3BG345400 Rh3BG345500 Rh3CG342600 Rh4AG082000 Rh4AG111200 Rh4CG089500 Rh6AG167200
rosa_wichuraiana	Rw4G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	453
AciI	CCGC	2 cut(s)	336, 453
AclWI	GGATC	1 cut(s)	498
AfaI	GTAC	2 cut(s)	33, 177
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	46, 91, 134, 326
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	257, 344
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	498
AlwNI	CAGNNNCTG	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	109, 352
AsuC2I	CCSGG	2 cut(s)	183, 184
AsuHPI	GGTGA	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	109, 352
AxyI	CCTNAGG	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	4 cut(s)	224, 415, 458, 481
BciT130I	CCWGG	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	183, 184
BcoDI	GTCTC	2 cut(s)	257, 344
BfoI	RGCGCY	1 cut(s)	380
BfrI	CTTAAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	183, 184, 330
Bme18I	GGWCC	2 cut(s)	109, 352
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	109, 352
BmiI	GGNNCC	3 cut(s)	110, 247, 353
BmrFI	CCNGG	3 cut(s)	183, 184, 330
BmsI	GCATC	3 cut(s)	26, 493, 511
BpuMI	CCSGG	2 cut(s)	183, 184
BsaBI	GATNNNNATC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	182, 329, 551
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse21I	CCTNAGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	182, 329, 551
BseGI	GGATG	7 cut(s)	34, 220, 232, 322, 469, 508, 526
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	257, 344
Bso31I	GGTCTC	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	490
Bsp19I	CCATGG	1 cut(s)	551
BspACI	CCGC	2 cut(s)	336, 453
BspCNI	CTCAG	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	110, 247, 353
BspPI	GGATC	1 cut(s)	498
BspTI	CTTAAG	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	182, 329, 551
BssMI	GATC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	330
BstAFI	CTTAAG	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	31
BstC8I	GCNNGC	4 cut(s)	101, 256, 397, 455
BstDEI	CTNAG	1 cut(s)	356
BstDSI	CCRYGG	1 cut(s)	551
BstF5I	GGATG	7 cut(s)	34, 220, 232, 322, 469, 508, 526
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	2 cut(s)	257, 344
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	3 cut(s)	181, 182, 328
BstSLI	GKGCMC	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	386
Bsu36I	CCTNAGG	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	551
BtsCI	GGATG	7 cut(s)	34, 220, 232, 322, 469, 508, 526
Cac8I	GCNNGC	4 cut(s)	101, 256, 397, 455
CaiI	CAGNNNCTG	1 cut(s)	303
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	109, 352
Cfr9I	CCCGGG	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	32, 176
CviAII	CATG	3 cut(s)	38, 412, 552
CviJI	RGCY	3 cut(s)	24, 278, 496
CviKI_1	RGCY	3 cut(s)	24, 278, 496
CviQI	GTAC	2 cut(s)	32, 176
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	551
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	2 cut(s)	109, 352
Eco81I	CCTNAGG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	3 cut(s)	41, 415, 555
FaiI	YATR	8 cut(s)	6, 39, 83, 387, 413, 459, 553, 559
FalI	AAGNNNNNCTT	3 cut(s)	48, 80, 530
FatI	CATG	3 cut(s)	37, 411, 551
FauI	CCCGC	1 cut(s)	446
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	7 cut(s)	41, 227, 239, 329, 476, 515, 533
Fsp4HI	GCNGC	1 cut(s)	375
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	380
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	41, 415, 555
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	4 cut(s)	157, 294, 307, 389
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	156, 258
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	5 cut(s)	38, 46, 284, 304, 355
Hpy8I	GTNNAC	2 cut(s)	156, 258
HpyAV	CCTTC	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	258, 374, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	41, 415, 555
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	1 cut(s)	450
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	3 cut(s)	26, 493, 511
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	1 cut(s)	492
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	1 cut(s)	490
MboII	GAAGA	2 cut(s)	68, 496
MhlI	GDGCHC	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	151, 303
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	8 cut(s)	42, 121, 189, 280, 338, 351, 361, 412
MseI	TTAA	3 cut(s)	66, 312, 537
MslI	CAYNNNNRTG	2 cut(s)	462, 556
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	3 cut(s)	183, 184, 330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	100
NciI	CCSGG	2 cut(s)	183, 184
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	3 cut(s)	41, 415, 555
NlaIV	GGNNCC	3 cut(s)	110, 247, 353
NmuCI	GTSAC	1 cut(s)	138
PagI	TCATGA	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	307, 389
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	151, 302
PpsI	GAGTC	2 cut(s)	151, 302
PpuMI	RGGWCCY	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	110, 247, 353
PspPI	GGNCC	2 cut(s)	109, 352
PspPPI	RGGWCCY	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	303
RsaI	GTAC	2 cut(s)	33, 177
RsaNI	GTAC	2 cut(s)	32, 176
RseI	CAYNNNNRTG	2 cut(s)	462, 556
SaqAI	TTAA	3 cut(s)	66, 312, 537
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	2 cut(s)	109, 352
SchI	GAGTC	2 cut(s)	151, 303
ScrFI	CCNGG	3 cut(s)	183, 184, 330
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	9 cut(s)	26, 53, 132, 151, 181, 331, 349, 404, 479
SfaNI	GCATC	3 cut(s)	26, 493, 511
SinI	GGWCC	2 cut(s)	109, 352
SmaI	CCCGGG	1 cut(s)	184
SmiMI	CAYNNNNRTG	2 cut(s)	462, 556
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SsiI	CCGC	2 cut(s)	336, 453
StyD4I	CCNGG	3 cut(s)	181, 182, 328
StyI	CCWWGG	1 cut(s)	551
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	307, 389
Tru1I	TTAA	3 cut(s)	66, 312, 537
Tru9I	TTAA	3 cut(s)	66, 312, 537
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	21, 402
TspGWI	ACGGA	1 cut(s)	101
TspMI	CCCGGG	1 cut(s)	182
Vha464I	CTTAAG	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	109, 352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmaI	CCCGGG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.