Rh2BG339000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017855
Physical Location & Seq
Reverse (-)
45016163 .. 45017341
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG339000.1

Sequence Viewer

Length: 429 bp
ATGGATGCCCCAAAGGAACCTTTGTTGACTCCCAAAGTGCCAAGAGTACCTCCCGGGTTTGATAAGAAGTCCAAAGGCGTGAAGGATGATTTGGGGGATGATGGAGTGATTTTGGGGTATAATGATGAATATTTGAAGAGCAAAGACAAGACCAAGACCGTGAATAATGATGTGGGAGCAAGGGATAACATTGAAGACTTAGTGGAACACACTTTTCGTGAGACTTCATCGAGTGATGCCTTAGAAGCGGCATTAACACACTTTGGGATGGATTTTTGTGAAGAAGGTACTATGGAGGCCATTGAGCACCTTGATTCTTATCTTTCTATGGGTAGACCGACACTTGAGGAGGATTATTACACAAGGCATGAGGCTAATGAGGTTCATACCTCTAACACTCATCTTTCCATTGATTCCTCTCCTCCGGTT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.93

Weight (kDa)

4.61

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 334
AciI CCGC 1 cut(s) 248
AfaI GTAC 2 cut(s) 48, 289
AgsI TTSAA 2 cut(s) 136, 194
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 1 cut(s) 297
AsuC2I CCSGG 2 cut(s) 54, 55
AvaI CYCGRG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 309
BccI CCATC 2 cut(s) 95, 262
BcnI CCSGG 2 cut(s) 54, 55
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 54, 55
BmeT110I CYCGRG 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 54, 55
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 2 cut(s) 54, 55
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 4 cut(s) 10, 91, 103, 273
BseJI GATNNNNATC 1 cut(s) 318
BseRI GAGGAG 2 cut(s) 362, 411
BshFI GGCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 2 cut(s) 54, 425
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 309
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 199, 241
BstF5I GGATG 4 cut(s) 10, 91, 103, 273
BstMAI GTCTC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 52, 53
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 4 cut(s) 10, 91, 103, 273
Cfr9I CCCGGG 1 cut(s) 53
Csp6I GTAC 2 cut(s) 47, 288
CviAII CATG 1 cut(s) 368
CviJI RGCY 2 cut(s) 299, 374
CviKI_1 RGCY 2 cut(s) 299, 374
CviQI GTAC 2 cut(s) 47, 288
DdeI CTNAG 2 cut(s) 199, 241
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 53
FaeI CATG 1 cut(s) 371
FaiI YATR 5 cut(s) 120, 293, 329, 369, 387
FatI CATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 4 cut(s) 17, 98, 110, 280
Fsp4HI GCNGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 299
HapII CCGG 2 cut(s) 54, 425
Hin1II CATG 1 cut(s) 371
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 3 cut(s) 28, 314, 413
HpaII CCGG 2 cut(s) 54, 425
Hpy166II GTNNAC 2 cut(s) 27, 335
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 27, 335
HpyAV CCTTC 2 cut(s) 76, 278
HpyCH4III ACNGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 199, 241
Hsp92II CATG 1 cut(s) 371
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 1 cut(s) 67
LweI GCATC 1 cut(s) 226
MboII GAAGA 3 cut(s) 148, 206, 293
MhlI GDGCHC 1 cut(s) 309
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 8 cut(s) 60, 289, 340, 343, 364, 373, 400, 427
MseI TTAA 1 cut(s) 254
MspI CCGG 2 cut(s) 54, 425
MspR9I CCNGG 2 cut(s) 54, 55
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 2 cut(s) 54, 55
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 314, 413
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 18
RsaI GTAC 2 cut(s) 48, 289
RsaNI GTAC 2 cut(s) 47, 288
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 249
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 54, 55
SduI GDGCHC 1 cut(s) 309
SetI ASST 6 cut(s) 22, 52, 289, 312, 384, 392
SfaNI GCATC 1 cut(s) 226
SmaI CCCGGG 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SsiI CCGC 1 cut(s) 248
SspI AATATT 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 52, 53
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 230
TaqII GACCGA 1 cut(s) 352
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 2 cut(s) 314, 413
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TspDTI ATGAA 3 cut(s) 141, 216, 374
TspMI CCCGGG 1 cut(s) 53
XmaI CCCGGG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.