transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0000395.1_g000018 Rmu_sc0000920.1_g000016 |
| rosa_samantha | Rh2BG339000 Rh3AG309300 Rh3BG345400 Rh3BG345500 Rh3CG342600 Rh4AG082000 Rh4AG111200 Rh4CG089500 Rh6AG167200 |
| rosa_wichuraiana | Rw4G006840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 258 |
| AflIII | ACRYGT | 1 cut(s) | 181 |
| AgsI | TTSAA | 5 cut(s) | 271, 280, 316, 359, 446 |
| AluBI | AGCT | 2 cut(s) | 246, 253 |
| AluI | AGCT | 2 cut(s) | 246, 253 |
| Alw26I | GTCTC | 1 cut(s) | 192 |
| AoxI | GGCC | 1 cut(s) | 362 |
| AspS9I | GGNCC | 1 cut(s) | 362 |
| AsuHPI | GGTGA | 1 cut(s) | 403 |
| BbsI | GAAGAC | 1 cut(s) | 24 |
| BccI | CCATC | 1 cut(s) | 278 |
| BcoDI | GTCTC | 1 cut(s) | 192 |
| BfaI | CTAG | 2 cut(s) | 42, 122 |
| BglII | AGATCT | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 362 |
| BmsI | GCATC | 1 cut(s) | 248 |
| BpiI | GAAGAC | 1 cut(s) | 24 |
| BpuEI | CTTGAG | 1 cut(s) | 76 |
| BshFI | GGCC | 1 cut(s) | 364 |
| BslFI | GGGAC | 1 cut(s) | 158 |
| BsmAI | GTCTC | 1 cut(s) | 192 |
| BsmFI | GGGAC | 1 cut(s) | 158 |
| BsnI | GGCC | 1 cut(s) | 364 |
| Bsp1407I | TGTACA | 1 cut(s) | 256 |
| Bsp143I | GATC | 1 cut(s) | 131 |
| BspANI | GGCC | 1 cut(s) | 364 |
| BspHI | TCATGA | 1 cut(s) | 262 |
| BsrGI | TGTACA | 1 cut(s) | 256 |
| BssMI | GATC | 1 cut(s) | 131 |
| BstAUI | TGTACA | 1 cut(s) | 256 |
| BstC8I | GCNNGC | 2 cut(s) | 167, 326 |
| BstDEI | CTNAG | 1 cut(s) | 191 |
| BstKTI | GATC | 1 cut(s) | 134 |
| BstMAI | GTCTC | 1 cut(s) | 192 |
| BstMBI | GATC | 1 cut(s) | 131 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 316, 325 |
| BstNSI | RCATGY | 1 cut(s) | 185 |
| BstV2I | GAAGAC | 1 cut(s) | 24 |
| BstX2I | RGATCY | 1 cut(s) | 131 |
| BstYI | RGATCY | 1 cut(s) | 131 |
| BsuRI | GGCC | 1 cut(s) | 364 |
| Cac8I | GCNNGC | 2 cut(s) | 167, 326 |
| CciI | TCATGA | 1 cut(s) | 262 |
| Cfr13I | GGNCC | 1 cut(s) | 362 |
| Csp6I | GTAC | 1 cut(s) | 257 |
| CviAII | CATG | 5 cut(s) | 79, 182, 263, 398, 419 |
| CviJI | RGCY | 8 cut(s) | 12, 69, 125, 154, 169, 246, 253, 364 |
| CviKI_1 | RGCY | 8 cut(s) | 12, 69, 125, 154, 169, 246, 253, 364 |
| CviQI | GTAC | 1 cut(s) | 257 |
| DdeI | CTNAG | 1 cut(s) | 191 |
| DpnI | GATC | 1 cut(s) | 133 |
| DpnII | GATC | 1 cut(s) | 131 |
| FaeI | CATG | 5 cut(s) | 82, 185, 266, 401, 422 |
| FaiI | YATR | 9 cut(s) | 80, 86, 183, 228, 264, 308, 373, 399, 420 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 273, 305 |
| FaqI | GGGAC | 1 cut(s) | 158 |
| FatI | CATG | 5 cut(s) | 78, 181, 262, 397, 418 |
| FspBI | CTAG | 2 cut(s) | 42, 122 |
| HaeIII | GGCC | 1 cut(s) | 364 |
| Hin1II | CATG | 5 cut(s) | 82, 185, 266, 401, 422 |
| HindIII | AAGCTT | 1 cut(s) | 244 |
| HinfI | GANTC | 1 cut(s) | 202 |
| HphI | GGTGA | 1 cut(s) | 403 |
| Hpy166II | GTNNAC | 2 cut(s) | 394, 416 |
| Hpy188I | TCNGA | 1 cut(s) | 37 |
| Hpy188III | TCNNGA | 3 cut(s) | 93, 263, 271 |
| Hpy8I | GTNNAC | 2 cut(s) | 394, 416 |
| HpyAV | CCTTC | 3 cut(s) | 39, 43, 180 |
| HpyCH4V | TGCA | 1 cut(s) | 62 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 316, 325 |
| HpyF3I | CTNAG | 1 cut(s) | 191 |
| Hsp92II | CATG | 5 cut(s) | 82, 185, 266, 401, 422 |
| Kzo9I | GATC | 1 cut(s) | 131 |
| LmnI | GCTCC | 1 cut(s) | 250 |
| LpnPI | CCDG | 1 cut(s) | 280 |
| LweI | GCATC | 1 cut(s) | 248 |
| MaeI | CTAG | 2 cut(s) | 42, 122 |
| MalI | GATC | 1 cut(s) | 133 |
| MboI | GATC | 1 cut(s) | 131 |
| MboII | GAAGA | 1 cut(s) | 24 |
| MfeI | CAATTG | 1 cut(s) | 137 |
| MflI | RGATCY | 1 cut(s) | 131 |
| MluCI | AATT | 1 cut(s) | 137 |
| MlyI | GAGTC | 1 cut(s) | 196 |
| MnlI | CCTC | 5 cut(s) | 100, 187, 267, 346, 379 |
| MseI | TTAA | 1 cut(s) | 291 |
| MslI | CAYNNNNRTG | 2 cut(s) | 83, 370 |
| MunI | CAATTG | 1 cut(s) | 137 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 316, 325 |
| NdeII | GATC | 1 cut(s) | 131 |
| NlaIII | CATG | 5 cut(s) | 82, 185, 266, 401, 422 |
| NmeAIII | GCCGAG | 1 cut(s) | 151 |
| NspI | RCATGY | 1 cut(s) | 185 |
| PagI | TCATGA | 1 cut(s) | 262 |
| PciI | ACATGT | 1 cut(s) | 181 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| PscI | ACATGT | 1 cut(s) | 181 |
| PspPI | GGNCC | 1 cut(s) | 362 |
| PsuI | RGATCY | 1 cut(s) | 131 |
| RsaI | GTAC | 1 cut(s) | 258 |
| RsaNI | GTAC | 1 cut(s) | 257 |
| RseI | CAYNNNNRTG | 2 cut(s) | 83, 370 |
| SaqAI | TTAA | 1 cut(s) | 291 |
| Sau3AI | GATC | 1 cut(s) | 131 |
| Sau96I | GGNCC | 1 cut(s) | 362 |
| SchI | GAGTC | 1 cut(s) | 196 |
| SetI | ASST | 7 cut(s) | 54, 92, 163, 248, 255, 278, 357 |
| SfaNI | GCATC | 1 cut(s) | 248 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 83, 370 |
| SmlI | CTYRAG | 1 cut(s) | 91 |
| SmoI | CTYRAG | 1 cut(s) | 91 |
| Sse9I | AATT | 1 cut(s) | 137 |
| SspMI | CTAG | 2 cut(s) | 42, 122 |
| TasI | AATT | 1 cut(s) | 137 |
| TatI | WGTACW | 1 cut(s) | 256 |
| Tru1I | TTAA | 1 cut(s) | 291 |
| Tru9I | TTAA | 1 cut(s) | 291 |
| TspDTI | ATGAA | 2 cut(s) | 67, 243 |
| XceI | RCATGY | 1 cut(s) | 185 |
| XspI | CTAG | 2 cut(s) | 42, 122 |