Rw4G006840

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
14298982 .. 14300318
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006840.1

Sequence Viewer

Length: 285 bp
ATGTCAAGTTCTTGTTTTCTTCTCCGCATTTCGTTCTTTCTTCCAGCTTTGCTTTCCCCTTTCTCATTTTCAGACCCAATTCATGGACTCTTGGCAGTCTTCATCTCATGTTCTGCTACTTGCTTCAAGGCATTTACAATAGGAGTTAGACAGCAGATAATACAACTTCCAGAGTTCTGTACAGAACACGATAGACCGTTGATAAACCACACACCATTAAAACTGGACTGGGAGGATGACAATGAAGACCTGCCAGAATGTAAAGTCGTAACTCTTTTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.63

Weight (kDa)

4.87

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 1 cut(s) 25
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 91, 252
BfuAI ACCTGC 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 2 cut(s) 91, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 228, 233
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 228, 233
BslI CCNNNNNNNGG 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 179
BspACI CCGC 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 179
BsrI ACTGG 2 cut(s) 228, 233
Bst4CI ACNGT 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 179
BstF5I GGATG 1 cut(s) 241
BstV2I GAAGAC 2 cut(s) 91, 252
BtsCI GGATG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 180
CviAII CATG 2 cut(s) 83, 108
CviJI RGCY 1 cut(s) 47
CviKI_1 RGCY 1 cut(s) 47
CviQI GTAC 1 cut(s) 180
FaeI CATG 2 cut(s) 86, 111
FaiI YATR 2 cut(s) 84, 109
FatI CATG 2 cut(s) 82, 107
FokI GGATG 1 cut(s) 248
Hin1II CATG 2 cut(s) 86, 111
HinfI GANTC 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 86, 111
LpnPI CCDG 6 cut(s) 57, 183, 209, 214, 263, 267
MaeIII GTNAC 1 cut(s) 268
MboII GAAGA 4 cut(s) 11, 32, 91, 257
MluCI AATT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 1 cut(s) 226
MseI TTAA 1 cut(s) 218
NlaIII CATG 2 cut(s) 86, 111
PflMI CCANNNNNTGG 1 cut(s) 83
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 218
SchI GAGTC 1 cut(s) 81
SetI ASST 2 cut(s) 49, 252
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 25
TaaI ACNGT 1 cut(s) 198
TasI AATT 1 cut(s) 78
TatI WGTACW 1 cut(s) 179
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 71, 91, 258
Van91I CCANNNNNTGG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.