Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000405.1

Orthogroup ID

OG0011688

Physical Location & Seq

Genomic Coordinates Forward (+)

31859 .. 33810

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggaatattcagagcataatggagtaggcatagcgaatatactgaggacagatcccgttctgatcggacacagagggaatggaatgaacgctttacagtcgtctgatcggagaatgagagccattaaggaaaactccatcatgtcgttcaacactgctgccaaataccctcttgattttgtggaatttgacgttcaggtaaccaaagatggctgccccgtcattttccacgacgacttcatcctcaccgaagatcagggtactgtgtttgagaagagaatacctgaactgtgtttgacggagttcctaaattatggtccacaaagagaggcagcaaaggatggaaagcctttgttaaggaaaaacaaagacggtcaaattgtaagatgggaggttgaaaaagatgattccctctgtaccctccaagaagtttttgagaaggtcgaaccttctgttggcttcaacattgagatcaaattcgacgactacattgtttaccaggaggactatctcgtccgtgtccttcaatccatcttgaaagttgtgtttgagtacgccaaagataggcctattgtattctcgtcattccaaccagatgcagcggtccttgttaagaagttgcagaacacctaccctgtctttttcttgacaaatggtgggaatgagatttactgtgatgtgagaaggaattctttggatgaagcaataaaggtgtgcttagagggtggtttggaaggcattgtatcggaggtgaaaggtgttttccgaaatcctggggcggtaaccaagattaaggagtccaagctttcacttctaacctatggcaaactaaataacgttgccgaagcagtgtacatgcaacacctaatgggaattgagggagtgattgtggattttgtgcaagagatcacagaagcagtgtgtgatatgataaagccatcggcggccacagaagaagacggggatgatttgttggaaggggacgggaagatgcaattgaaatcaaagccggagttctcgcagagggagctttcctttctgttgaagctcattccagaattgatacaactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009536 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0046872 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

357

Amino Acids

40.34

Weight (kDa)

4.83

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	24 - 301	2.8e-46	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02040
fragaria_vesca	FvH4_6g53990 FvH4_6g53990
malus_domestica	MD09G1006500.v1.1 MD17G1010400.v1.1
prunus_persica	Prupe.3G310500_v2.0.a1 Prupe.3G310500_v2.0.a1
pyrus_communis	pycom111g00480 pycom17g00500
rosa_chinensis	RchiOBHm_Chr2g0176161
rosa_laevigata	RLG00000022386
rosa_multiflora	Rmu_sc0000405.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076720
rosa_rugosa	Rorug02G0591200
rosa_samantha	Rh2AG669800 Rh2BG681400 Rh2CG644300 Rh2DG695100
rosa_wichuraiana	Rw2G054950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AciI	CCGC	3 cut(s)	602, 779, 944
AclI	AACGTT	1 cut(s)	837
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	3 cut(s)	185, 476, 688
AfaI	GTAC	4 cut(s)	262, 418, 554, 854
AfiI	CCNNNNNNNGG	2 cut(s)	455, 564
AgsI	TTSAA	7 cut(s)	151, 398, 463, 527, 538, 1000, 1045
AjnI	CCWGG	2 cut(s)	498, 772
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AluBI	AGCT	3 cut(s)	805, 1030, 1048
AluI	AGCT	3 cut(s)	805, 1030, 1048
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	566, 945
ApeKI	GCWGC	4 cut(s)	158, 213, 332, 599
ApoI	RAATTY	3 cut(s)	185, 476, 688
Asp700I	GAANNNNTTC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	317, 604
AsuHPI	GGTGA	2 cut(s)	238, 763
AvaII	GGWCC	2 cut(s)	317, 604
BbsI	GAAGAC	1 cut(s)	963
BbvI	GCAGC	4 cut(s)	145, 200, 344, 611
BccI	CCATC	6 cut(s)	146, 203, 335, 381, 539, 946
BciT130I	CCWGG	2 cut(s)	500, 774
BisI	GCNGC	5 cut(s)	159, 214, 333, 600, 945
BlsI	GCNGC	5 cut(s)	160, 215, 334, 601, 946
Bme1390I	CCNGG	2 cut(s)	500, 774
Bme18I	GGWCC	2 cut(s)	317, 604
BmgT120I	GGNCC	2 cut(s)	317, 604
BmrFI	CCNGG	2 cut(s)	500, 774
BmsI	GCATC	2 cut(s)	586, 981
BpiI	GAAGAC	1 cut(s)	963
BsaJI	CCNNGG	1 cut(s)	773
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 564
BseBI	CCWGG	2 cut(s)	500, 774
BseDI	CCNNGG	1 cut(s)	773
BseGI	GGATG	4 cut(s)	240, 346, 703, 970
BseLI	CCNNNNNNNGG	2 cut(s)	455, 564
BseMII	CTCAG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	145, 200, 344, 611
BshFI	GGCC	2 cut(s)	568, 947
BsiSI	CCGG	1 cut(s)	1010
BslFI	GGGAC	1 cut(s)	995
BslI	CCNNNNNNNGG	2 cut(s)	455, 564
BsmFI	GGGAC	1 cut(s)	995
BsnI	GGCC	2 cut(s)	568, 947
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	6 cut(s)	52, 63, 106, 253, 471, 906
BspACI	CCGC	3 cut(s)	602, 779, 944
BspANI	GGCC	2 cut(s)	568, 947
BspCNI	CTCAG	1 cut(s)	36
BspPI	GGATC	1 cut(s)	47
BsrGI	TGTACA	1 cut(s)	852
BssECI	CCNNGG	1 cut(s)	773
BssMI	GATC	6 cut(s)	52, 63, 106, 253, 471, 906
Bst2UI	CCWGG	2 cut(s)	500, 774
Bst4CI	ACNGT	5 cut(s)	99, 265, 291, 374, 674
Bst6I	CTCTTC	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	852
BstDEI	CTNAG	2 cut(s)	44, 718
BstEII	GGTNACC	2 cut(s)	199, 781
BstF5I	GGATG	4 cut(s)	240, 346, 703, 970
BstKTI	GATC	6 cut(s)	55, 66, 109, 256, 474, 909
BstMBI	GATC	6 cut(s)	52, 63, 106, 253, 471, 906
BstMWI	GCNNNNNNNGC	1 cut(s)	1027
BstNI	CCWGG	2 cut(s)	500, 774
BstNSI	RCATGY	1 cut(s)	859
BstPI	GGTNACC	2 cut(s)	199, 781
BstSCI	CCNGG	2 cut(s)	498, 772
BstV1I	GCAGC	4 cut(s)	145, 200, 344, 611
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	568, 947
BtsCI	GGATG	4 cut(s)	240, 346, 703, 970
BtsI	GCAGTG	3 cut(s)	153, 855, 924
BtsIMutI	CAGTG	3 cut(s)	153, 855, 924
Cfr13I	GGNCC	2 cut(s)	317, 604
Csp6I	GTAC	4 cut(s)	261, 417, 553, 853
CviAII	CATG	2 cut(s)	142, 856
CviQI	GTAC	4 cut(s)	261, 417, 553, 853
DdeI	CTNAG	2 cut(s)	44, 718
DpnI	GATC	6 cut(s)	54, 65, 108, 255, 473, 908
DpnII	GATC	6 cut(s)	52, 63, 106, 253, 471, 906
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	1 cut(s)	945
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	317, 604
Eco91I	GGTNACC	2 cut(s)	199, 781
EcoO65I	GGTNACC	2 cut(s)	199, 781
EcoRI	GAATTC	1 cut(s)	688
EcoRII	CCWGG	2 cut(s)	498, 772
FaeI	CATG	2 cut(s)	145, 859
FaiI	YATR	8 cut(s)	18, 32, 41, 143, 315, 822, 857, 929
FalI	AAGNNNNNCTT	4 cut(s)	676, 708, 701, 733
FaqI	GGGAC	1 cut(s)	995
FatI	CATG	2 cut(s)	141, 855
Fnu4HI	GCNGC	5 cut(s)	159, 214, 333, 600, 945
FokI	GGATG	4 cut(s)	227, 353, 710, 977
Fsp4HI	GCNGC	5 cut(s)	159, 214, 333, 600, 945
GluI	GCNGC	5 cut(s)	159, 214, 333, 600, 945
HaeIII	GGCC	2 cut(s)	568, 947
HapII	CCGG	1 cut(s)	1010
Hin1II	CATG	2 cut(s)	145, 859
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	2 cut(s)	407, 797
HpaII	CCGG	1 cut(s)	1010
HphI	GGTGA	2 cut(s)	238, 763
Hpy166II	GTNNAC	3 cut(s)	320, 496, 853
Hpy188I	TCNGA	8 cut(s)	13, 63, 68, 106, 111, 748, 767, 1073
Hpy188III	TCNNGA	4 cut(s)	173, 535, 646, 1055
Hpy8I	GTNNAC	3 cut(s)	320, 496, 853
Hpy99I	CGWCG	2 cut(s)	236, 485
HpyAV	CCTTC	6 cut(s)	433, 459, 533, 678, 728, 971
HpyCH4III	ACNGT	5 cut(s)	99, 265, 291, 374, 674
HpyCH4IV	ACGT	2 cut(s)	192, 837
HpyCH4V	TGCA	5 cut(s)	599, 622, 859, 901, 994
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1027
HpyF3I	CTNAG	2 cut(s)	44, 718
HpySE526I	ACGT	2 cut(s)	192, 837
Hsp92II	CATG	2 cut(s)	145, 859
Kzo9I	GATC	6 cut(s)	52, 63, 106, 253, 471, 906
LmnI	GCTCC	1 cut(s)	1027
Lsp1109I	GCAGC	4 cut(s)	145, 200, 344, 611
LweI	GCATC	2 cut(s)	586, 981
MaeII	ACGT	2 cut(s)	192, 837
MaeIII	GTNAC	2 cut(s)	199, 781
MalI	GATC	6 cut(s)	54, 65, 108, 255, 473, 908
MboI	GATC	6 cut(s)	52, 63, 106, 253, 471, 906
MboII	GAAGA	5 cut(s)	263, 286, 965, 968, 1000
MfeI	CAATTG	1 cut(s)	995
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	8 cut(s)	185, 310, 378, 476, 688, 873, 995, 1058
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	2 cut(s)	613, 954
MroXI	GAANNNNTTC	1 cut(s)	688
MseI	TTAA	4 cut(s)	126, 356, 612, 792
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	1010
MspR9I	CCNGG	2 cut(s)	500, 774
MunI	CAATTG	1 cut(s)	995
MvaI	CCWGG	2 cut(s)	500, 774
MwoI	GCNNNNNNNGC	1 cut(s)	1027
NdeII	GATC	6 cut(s)	52, 63, 106, 253, 471, 906
NlaIII	CATG	2 cut(s)	145, 859
NspI	RCATGY	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	160, 215, 334, 601, 946
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
Psp1406I	AACGTT	1 cut(s)	837
Psp6I	CCWGG	2 cut(s)	498, 772
PspEI	GGTNACC	2 cut(s)	199, 781
PspGI	CCWGG	2 cut(s)	498, 772
PspPI	GGNCC	2 cut(s)	317, 604
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	4 cut(s)	262, 418, 554, 854
RsaNI	GTAC	4 cut(s)	261, 417, 553, 853
SaqAI	TTAA	4 cut(s)	126, 356, 612, 792
SatI	GCNGC	5 cut(s)	159, 214, 333, 600, 945
Sau3AI	GATC	6 cut(s)	52, 63, 106, 253, 471, 906
Sau96I	GGNCC	2 cut(s)	317, 604
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	500, 774
SfaNI	GCATC	2 cut(s)	586, 981
SinI	GGWCC	2 cut(s)	317, 604
Sse9I	AATT	8 cut(s)	185, 310, 378, 476, 688, 873, 995, 1058
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	3 cut(s)	602, 779, 944
SspI	AATATT	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	2 cut(s)	498, 772
TaaI	ACNGT	5 cut(s)	99, 265, 291, 374, 674
TaiI	ACGT	2 cut(s)	195, 840
TaqI	TCGA	2 cut(s)	444, 480
TasI	AATT	8 cut(s)	185, 310, 378, 476, 688, 873, 995, 1058
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	4 cut(s)	126, 356, 612, 792
Tru9I	TTAA	4 cut(s)	126, 356, 612, 792
TscAI	CASTG	3 cut(s)	160, 855, 924
TseI	GCWGC	4 cut(s)	158, 213, 332, 599
TspDTI	ATGAA	3 cut(s)	101, 229, 714
TspGWI	ACGGA	2 cut(s)	314, 506
TspRI	CASTG	3 cut(s)	160, 855, 924
VpaK11BI	GGWCC	2 cut(s)	317, 604
XapI	RAATTY	3 cut(s)	185, 476, 688
XceI	RCATGY	1 cut(s)	859
XmnI	GAANNNNTTC	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.