Rmu_sc0000452.1_g000003

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000452.1
OG0005060
Physical Location & Seq
Forward (+)
13511 .. 15145
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 759 bp
atgatggcgaacttgaattcgaaattagggttgttccgattagggacacggtggctgagcagtactgggagtgggccagggaagagggtcgcggcggtttggggcaatggagactacgggaggctcggattagggagcttggactctcactggagccctacccctctgctctgctctgcatttcaggaccaaagccttgaagccgttgcttgcggcggagctcacactctgttcttgacccaagctggccgggttttcgccaccggcctaaatgatttcggacagcttggggcctcgactgatgtgccttatgctactgagccggtggaggtatcgggaatcaacaagccagttgtgcaaatttccgctggatattatcattcttgtgctgttacagaagatggagagttatacatgtgggggaagaactcatatgggcagcttggccttggaaagagaggagcaaaaacagttcctgcaccagcaaaagttgaatgcttggctggaatcaccattaggatggtagctttgggatcagagcactcagtggctgttactgatggaggtgagtccttaagttggggaggaggttctggaagacttggtcatggccctgaatcaggcattttaggaattttcaaaagtaccgggtgggttttcttttcctcttattccaatatttcactgtatgaatatacaccatctatctatcttccttttactatgtttgtgaagaagttcccacttcctgcaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

252

Amino Acids

26.56

Weight (kDa)

7.68

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 32 - 202 5.1e-46 RCC1-like domain
RCC1 PF00415 34 - 79 2.4e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 68 - 95 4.9e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 83 - 131 1.5e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 118 - 147 2.4e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 134 - 185 1.1e-13 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 92
AciI CCGC 5 cut(s) 92, 95, 213, 216, 366
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 3 cut(s) 16, 360, 633
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 2 cut(s) 64, 646
AfiI CCNNNNNNNGG 2 cut(s) 579, 620
AflII CTTAAG 1 cut(s) 574
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 4 cut(s) 16, 200, 494, 640
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 6 cut(s) 138, 221, 245, 286, 442, 527
AluI AGCT 6 cut(s) 138, 221, 245, 286, 442, 527
Alw21I GWGCWC 2 cut(s) 223, 543
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 2 cut(s) 476, 551
AoxI GGCC 6 cut(s) 74, 247, 265, 291, 445, 610
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 3 cut(s) 16, 360, 633
Asp700I GAANNNNTTC 1 cut(s) 737
AspS9I GGNCC 4 cut(s) 74, 187, 291, 611
AsuC2I CCSGG 2 cut(s) 251, 649
AsuHPI GGTGA 2 cut(s) 502, 578
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 187
BanII GRGCYC 2 cut(s) 158, 223
BbsI GAAGAC 1 cut(s) 604
Bbv12I GWGCWC 2 cut(s) 223, 543
BbvI GCAGC 1 cut(s) 451
BccI CCATC 4 cut(s) 395, 514, 554, 709
BceAI ACGGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 2 cut(s) 251, 649
BcoDI GTCTC 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 574
BisI GCNGC 3 cut(s) 93, 214, 440
BlpI GCTNAGC 1 cut(s) 56
BlsI GCNGC 3 cut(s) 94, 215, 441
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 3 cut(s) 78, 251, 649
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 4 cut(s) 74, 187, 291, 611
BmiI GGNNCC 2 cut(s) 155, 292
BmrFI CCNGG 3 cut(s) 78, 251, 649
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 604
BpmI CTGGAG 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 20
BpuMI CCSGG 2 cut(s) 251, 649
BsaJI CCNNGG 2 cut(s) 77, 448
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 620
Bse118I RCCGGY 2 cut(s) 263, 322
Bse1I ACTGG 3 cut(s) 70, 155, 350
Bse3DI GCAATG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 77, 448
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 579, 620
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 3 cut(s) 47, 309, 558
BseNI ACTGG 3 cut(s) 70, 155, 350
BseRI GAGGAG 2 cut(s) 474, 600
BseXI GCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 6 cut(s) 76, 249, 267, 293, 447, 612
BsiHKAI GWGCWC 2 cut(s) 223, 543
BsiSI CCGG 4 cut(s) 250, 264, 323, 648
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 579, 620
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 6 cut(s) 76, 249, 267, 293, 447, 612
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 3 cut(s) 158, 223, 543
Bsp143I GATC 1 cut(s) 533
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 5 cut(s) 92, 95, 213, 216, 366
BspANI GGCC 6 cut(s) 76, 249, 267, 293, 447, 612
BspCNI CTCAG 3 cut(s) 48, 310, 557
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 155, 292
BspPI GGATC 1 cut(s) 541
BspT104I TTCGAA 1 cut(s) 20
BspTI CTTAAG 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 2 cut(s) 263, 322
BsrI ACTGG 3 cut(s) 70, 155, 350
BssAI RCCGGY 2 cut(s) 263, 322
BssECI CCNNGG 2 cut(s) 77, 448
BssMI GATC 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 3 cut(s) 51, 472, 687
Bst6I CTCTTC 1 cut(s) 77
BstAFI CTTAAG 1 cut(s) 574
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 211, 247
BstDEI CTNAG 3 cut(s) 56, 318, 544
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 1 cut(s) 525
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 1 cut(s) 536
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 533
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 3 cut(s) 76, 249, 647
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 604
BstXI CCANNNNNNTGG 1 cut(s) 520
BsuRI GGCC 6 cut(s) 76, 249, 267, 293, 447, 612
BtsCI GGATG 1 cut(s) 525
BtsIMutI CAGTG 3 cut(s) 148, 552, 683
Cac8I GCNNGC 2 cut(s) 211, 247
CaiI CAGNNNCTG 2 cut(s) 476, 551
Cfr10I RCCGGY 2 cut(s) 263, 322
Cfr13I GGNCC 4 cut(s) 74, 187, 291, 611
Csp6I GTAC 2 cut(s) 63, 645
CviAII CATG 2 cut(s) 415, 608
CviQI GTAC 2 cut(s) 63, 645
DdeI CTNAG 3 cut(s) 56, 318, 544
DpnI GATC 1 cut(s) 535
DpnII GATC 1 cut(s) 533
DraIII CACNNNGTG 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 448
Eco24I GRGCYC 2 cut(s) 158, 223
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoO109I RGGNCCY 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 448
EcoT38I GRGCYC 2 cut(s) 158, 223
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 2 cut(s) 418, 611
FaiI YATR 9 cut(s) 312, 412, 416, 433, 435, 609, 690, 696, 725
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 414, 607
FauNDI CATATG 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 93, 214, 440
FokI GGATG 1 cut(s) 532
FriOI GRGCYC 2 cut(s) 158, 223
Fsp4HI GCNGC 3 cut(s) 93, 214, 440
GluI GCNGC 3 cut(s) 93, 214, 440
GsuI CTGGAG 1 cut(s) 172
HaeIII GGCC 6 cut(s) 76, 249, 267, 293, 447, 612
HapII CCGG 4 cut(s) 250, 264, 323, 648
Hin1II CATG 2 cut(s) 418, 611
HinfI GANTC 5 cut(s) 143, 339, 507, 569, 617
HpaII CCGG 4 cut(s) 250, 264, 323, 648
HphI GGTGA 2 cut(s) 502, 578
Hpy188I TCNGA 5 cut(s) 38, 128, 281, 538, 758
Hpy188III TCNNGA 4 cut(s) 185, 235, 336, 594
HpyCH4III ACNGT 3 cut(s) 51, 472, 687
HpyCH4V TGCA 4 cut(s) 179, 358, 479, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
HpyF3I CTNAG 3 cut(s) 56, 318, 544
Hsp92II CATG 2 cut(s) 418, 611
Kzo9I GATC 1 cut(s) 533
LmnI GCTCC 4 cut(s) 135, 153, 218, 461
Lsp1109I GCAGC 1 cut(s) 451
MaeIII GTNAC 2 cut(s) 391, 553
MalI GATC 1 cut(s) 535
MboI GATC 1 cut(s) 533
MboII GAAGA 6 cut(s) 94, 410, 436, 609, 704, 745
MhlI GDGCHC 3 cut(s) 158, 223, 543
MluCI AATT 4 cut(s) 16, 23, 360, 633
MlyI GAGTC 2 cut(s) 137, 578
MroXI GAANNNNTTC 1 cut(s) 737
MseI TTAA 1 cut(s) 575
MslI CAYNNNNRTG 2 cut(s) 384, 518
MspA1I CMGCKG 1 cut(s) 368
MspCI CTTAAG 1 cut(s) 574
MspI CCGG 4 cut(s) 250, 264, 323, 648
MspR9I CCNGG 3 cut(s) 78, 251, 649
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 355
NciI CCSGG 2 cut(s) 251, 649
NdeI CATATG 1 cut(s) 433
NdeII GATC 1 cut(s) 533
NlaIII CATG 2 cut(s) 418, 611
NlaIV GGNNCC 2 cut(s) 155, 292
NspI RCATGY 1 cut(s) 418
NspV TTCGAA 1 cut(s) 20
PciI ACATGT 1 cut(s) 414
PctI GAATGC 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 3 cut(s) 339, 507, 617
PflFI GACNNNGTC 1 cut(s) 603
PkrI GCNGC 3 cut(s) 94, 215, 441
PleI GAGTC 2 cut(s) 137, 577
PpsI GAGTC 2 cut(s) 137, 577
PscI ACATGT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 155, 292
PspPI GGNCC 4 cut(s) 74, 187, 291, 611
PstNI CAGNNNCTG 2 cut(s) 476, 551
PsyI GACNNNGTC 1 cut(s) 603
RsaI GTAC 2 cut(s) 64, 646
RsaNI GTAC 2 cut(s) 63, 645
RseI CAYNNNNRTG 2 cut(s) 384, 518
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 575
SatI GCNGC 3 cut(s) 93, 214, 440
Sau3AI GATC 1 cut(s) 533
Sau96I GGNCC 4 cut(s) 74, 187, 291, 611
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 2 cut(s) 137, 578
ScrFI CCNGG 3 cut(s) 78, 251, 649
SduI GDGCHC 3 cut(s) 158, 223, 543
SetI ASST 9 cut(s) 140, 223, 247, 288, 333, 444, 529, 568, 592
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 2 cut(s) 384, 518
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
Sse9I AATT 4 cut(s) 16, 23, 360, 633
SsiI CCGC 5 cut(s) 92, 95, 213, 216, 366
SspI AATATT 1 cut(s) 679
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 3 cut(s) 76, 249, 647
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 51, 472, 687
TaqI TCGA 2 cut(s) 20, 296
TasI AATT 4 cut(s) 16, 23, 360, 633
TatI WGTACW 1 cut(s) 62
TauI GCSGC 2 cut(s) 95, 216
TfiI GAWTC 3 cut(s) 339, 507, 617
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TscAI CASTG 3 cut(s) 155, 552, 690
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 1 cut(s) 705
TspRI CASTG 3 cut(s) 155, 552, 690
Tth111I GACNNNGTC 1 cut(s) 603
Vha464I CTTAAG 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 3 cut(s) 16, 360, 633
XceI RCATGY 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 737
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.